# List of top-scoring protein chains for t06-100-30-CB_burial_14_7-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # # FSSP representative for each protein chain taken from FSSP: # ------------------Citations (FSSP) ----------------------------------- # L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue FSSP-rep SCOP_domain SCOP_suid 5S 5N 12S 6S 12S 10N 2f8aA 208 1.33e-32 1xzoA 174 9.73e-12 1st9A 143 2.14e-11 c.47.1.10 98987 2f9sA 151 5.31e-11 1jfuA 186 1.49e-08 c.47.1.10 62940 1kngA 156 6.98e-07 c.47.1.10 72777 2cvbA 188 1.23e-06 1z5yE 149 9.70e-06 1xvwA 160 3.51e-05 1lu4A 136 4.73e-05 c.47.1.10 91124 1o8xA 146 5.35e-05 c.47.1.10 86681 2b7kA 200 8.37e-05 1i5gA 144 1.56e-04 1ewxA c.47.1.10 61784 2fy6A 143 1.65e-04 1zzoA 136 2.37e-04 1qmvA 197 4.97e-04 1qq2A c.47.1.10 33066 1t00A 112 7.77e-04 1xccA 220 5.37e-03 1erv 105 5.47e-03 1erv c.47.1.1 32743 1thx 115 8.25e-03 1thx c.47.1.1 32732 2a4vA 159 8.44e-03 1r26A 125 1.71e-02 c.47.1.1 96847 2trxA 108 1.90e-02 1thx c.47.1.1 32719 1bvoA 175 2.70e-02 1a3qA b.2.5.3 22457 1faaA 124 4.77e-02 1erv c.47.1.1 32738 1w4vA 119 6.76e-02 2f51A 118 6.98e-02 1erw 105 9.60e-02 1erv c.47.1.1 32745 1xvqA 175 1.59e-01 1kshA 186 2.31e-01 c.37.1.8 72914 1uptA 171 2.54e-01 c.37.1.8 99767 1vs0A 310 3.75e-01 1z7gA 217 4.59e-01 1v98A 140 5.08e-01 1vhxA 150 6.21e-01 c.55.3.8 100712 1eejA 216 6.97e-01 1eejA c.47.1.9,d.17.3.1 33057,38071 1lj9A 144 7.44e-01 a.4.5.28 78035 1uf5A 303 7.84e-01 d.160.1.2 107808 1gu2A 124 8.40e-01 a.3.1.1 76348 1vpqA 273 8.53e-01 1ek0A 170 1.06e+00 1ctqA c.37.1.8 32076 1x0rA 249 1.27e+00 1rz3A 201 1.35e+00 c.37.1.6 98132 1n8jA 186 1.44e+00 c.47.1.10 85401 2a5dA 175 1.57e+00 2b5eA 504 1.60e+00 1tc5A 194 2.03e+00 c.110.1.1 106752 1f74A 293 2.16e+00 1nal3 c.1.10.1 29079 1zj6A 187 2.67e+00 1nswA 105 2.75e+00 c.47.1.1 92097 2f7fA 494 3.02e+00 1im8A 244 3.09e+00 c.66.1.14 66212 1uc7A 125 3.48e+00 c.47.1.1 99163 1y9zA 441 3.51e+00 1senA 164 3.99e+00 c.47.1.1 105465 1vcdA 126 4.00e+00 1ogiA 303 4.38e+00 b.43.4.2,c.25.1.1 92914,92915 1lh0A 213 4.78e+00 c.61.1.1 73896 1xdnA 277 4.90e+00 1xx6A 191 5.00e+00 1b5qA 472 5.12e+00 1b37B c.3.1.2,d.16.1.5 30404,37968 2fpnA 216 5.52e+00 1o5xA 248 5.54e+00 c.1.1.1 92528 1h2wA 710 5.72e+00 b.69.7.1,c.69.1.4 76596,76597 1tz9A 367 5.79e+00 c.1.15.6 107466 1f6bA 198 6.03e+00 c.37.1.8 64986 8rucI 123 6.65e+00 1rboC d.73.1.1 39629 1wddS 128 6.68e+00 1g3qA 237 6.73e+00 1hyqA c.37.1.10 60237 2cokA 113 6.73e+00 2bw0A 329 6.95e+00 1t71A 281 7.01e+00 1flcA 432 7.02e+00 1flcA b.19.1.3,c.23.10.2 23837,31337 1a8y 367 7.15e+00 1a8y c.47.1.3,c.47.1.3,c.47.1.3 32781,32782,32783 1wpbA 172 7.39e+00 2erxA 172 7.42e+00 1fzqA 181 7.49e+00 1hurA c.37.1.8 32060 1jkmB 361 7.68e+00 1jkmA c.69.1.2 34634 1r8sA 164 7.97e+00 c.37.1.8 97247 1f4pA 147 7.99e+00 5nul c.23.5.1 59651 1oj5A 132 8.00e+00 d.110.3.8 93087 1yzfA 195 8.50e+00 1qf9A 194 8.90e+00 1zin c.37.1.1 31848 1je5A 206 9.28e+00 1je5A b.40.4.7 62909 1tv8A 340 1.01e+01 c.1.28.3 107352 1up7A 417 1.05e+01 1hgxA 183 1.07e+01 1tc1A c.61.1.1 34027 2trcP 217 1.08e+01 1b9yC c.47.1.6 33051 1fh9A 312 1.09e+01 1taxA c.1.8.3 28913 2erbA 125 1.11e+01 1bx1A 314 1.11e+01 1fnc b.43.4.2,c.25.1.1 25629,31519 1oz9A 150 1.15e+01 d.92.1.15 93808 2as0A 396 1.20e+01 1hd2A 161 1.22e+01 c.47.1.10 60962 1ns5A 155 1.24e+01 c.116.1.3 80705 1txuA 273 1.25e+01 a.222.1.1 107439 1y2kA 349 1.26e+01 1px5A 349 1.27e+01 a.160.1.2,d.218.1.6 95277,95278 2f9lA 199 1.28e+01 1xt8A 292 1.29e+01 1q0uA 219 1.32e+01 c.37.1.19 95512 1wh5A 80 1.34e+01 1srrA 124 1.35e+01 1dz3A c.23.1.1 31110 1lm8V 160 1.38e+01 b.3.3.1 74035 1o3yA 166 1.47e+01 c.37.1.8 86618 1gk8I 140 1.48e+01 d.73.1.1 65242 3ygsP 97 1.51e+01 3ygsP a.77.1.3 18435 1nu0A 138 1.52e+01 c.55.3.8 92165 1mb3A 124 1.54e+01 c.23.1.1 78907 1ufoA 238 1.57e+01 c.69.1.27 99344 1fnd 314 1.70e+01 1fnc b.43.4.2,c.25.1.1 25626,31516 1ls1A 295 1.74e+01 a.24.13.1,c.37.1.10 78170,78171 1ln1A 214 1.74e+01 d.129.3.2 74038 1xk4C 113 1.77e+01 1w4rA 195 1.92e+01 1eokA 290 1.95e+01 1eokA c.1.8.5 28991 1lmb3 92 1.97e+01 1lmb3 1ir21 140 2.00e+01 1vdmA 153 2.06e+01 1u7pA 164 2.10e+01 2aw4P 114 2.12e+01 1ve3A 227 2.21e+01 1u7eB 154 2.25e+01 1qusA 322 2.30e+01 1ltm d.2.1.6 36991 1yxyA 234 2.39e+01 1sviA 195 2.49e+01 c.37.1.8 106048 2f2lX 167 2.51e+01 1w0mA 226 2.53e+01 c.1.1.1 109027 2bmeA 186 2.57e+01 2gaeA 346 2.60e+01 1srvA 145 2.62e+01 1derA c.8.5.1 30817 2czrA 226 2.67e+01 1jflA 228 2.69e+01 c.78.2.1,c.78.2.1 71656,71657 1xm7A 195 2.69e+01 1szwA 379 2.77e+01 d.265.1.4 99047 1v7pC 200 2.84e+01 c.62.1.1 108408 1vk9A 151 2.91e+01 c.139.1.1 108640 1vsrA 136 3.05e+01 1vsrA c.52.1.15 33332 2g6bA 180 3.07e+01 1m2dA 110 3.07e+01 c.47.1.11 78476 1w7bA 339 3.12e+01 1dk8A 147 3.15e+01 1agrE a.91.1.1 18548 1enfA 212 3.16e+01 3seb b.40.2.2,d.15.6.1 25198,37787 2fikA 287 3.18e+01 1i3zA 103 3.21e+01 d.93.1.1 83667 1yzqA 170 3.22e+01 1zmaA 118 3.23e+01 1gpjA 404 3.25e+01 a.151.1.1,c.2.1.7,d.58.39.1 65451,65452,65453 1mr3F 181 3.31e+01 c.37.1.8 79422 1gqnA 252 3.36e+01 c.1.10.1 90514 1e4fT 419 3.39e+01 1e4fT c.55.1.1,c.55.1.1 33453,33454 1vjhA 122 3.41e+01 d.129.3.1 100811 1oeyJ 107 3.42e+01 d.15.2.2 92804 1r9jA 673 3.43e+01 2a0mA 316 3.51e+01 1tjyA 316 3.58e+01 c.93.1.1 107062 1adr 76 3.68e+01 1r69 a.35.1.2 17042 1x52A 124 3.70e+01 2b1eA 564 3.70e+01 1yhtA 367 3.72e+01 2basA 431 3.73e+01 1tm9A 137 3.81e+01 a.225.1.1 107150 1oywA 523 3.86e+01 a.4.5.43,c.37.1.19,c.37.1.19 93760,93761,93762 2fexA 188 3.87e+01 1zx0A 236 3.89e+01 1a76 326 3.92e+01 1a76 a.60.7.1,c.120.1.2 18091,33361 1t6cA 315 3.94e+01 c.55.1.8,c.55.1.8 106558,106559 1uayA 242 3.99e+01 c.2.1.2 88390 1uacH 114 4.03e+01 b.1.1.1 99132 1ylmA 144 4.05e+01 1kte 105 4.06e+01 1kte c.47.1.1 32771 1xf1A 926 4.14e+01 1n55A 251 4.16e+01 c.1.1.1 80007 1t5bA 201 4.17e+01 c.23.5.3 106433 1xw8A 252 4.21e+01 1afp 51 4.23e+01 1afp g.26.1.1 44947 1o6dA 163 4.26e+01 c.116.1.3 92567 1m7bA 184 4.34e+01 c.37.1.8 74572 1ra6A 461 4.38e+01 e.8.1.4 104879 2f6uA 234 4.47e+01 1yvoA 172 4.48e+01 1rliA 184 4.55e+01 c.23.5.6 97647 2bnlA 136 4.57e+01 1tk9A 188 4.57e+01 c.80.1.3 107082 1qqp2 218 4.60e+01 1qqp2 1q92A 197 4.66e+01 c.108.1.8 96250 1gdeA 389 4.69e+01 c.67.1.1 60456 1wxxA 382 4.82e+01 2a61A 145 4.83e+01 1kq3A 376 4.92e+01 e.22.1.2 68790 1a8l 226 4.98e+01 1a8l c.47.1.2,c.47.1.2 32777,32778 2plc 274 5.01e+01 2plc c.1.18.2 29614 1oihA 301 5.07e+01 b.82.2.5 93051 1v77A 212 5.08e+01 c.6.3.2 108402 2ae0X 345 5.26e+01 2ptd 298 5.33e+01 2plc c.1.18.2 29605 1ynpA 317 5.39e+01 1yf3A 259 5.45e+01 1uj8A 77 5.48e+01 1r7aA 504 5.49e+01 b.71.1.1,c.1.8.1 97192,97193 1t0yA 122 5.58e+01 d.15.1.1 99066 2atzA 180 5.61e+01 2bmaA 470 5.63e+01 5hpgA 84 5.65e+01 5hpgA g.14.1.1 44642 1ixcA 294 5.74e+01 a.4.5.37,c.94.1.1 83764,83765 1jk0B 345 5.80e+01 a.25.1.2 63143 1ei5A 520 5.91e+01 1ei5A b.61.3.1,b.61.3.1,e.3.1.1 27418,27419,42772 1sqrA 95 5.96e+01 1g8sA 230 6.01e+01 c.66.1.3 90507 1fdr 248 6.03e+01 1fdr b.43.4.2,c.25.1.1 25653,31543 1si6X 282 6.18e+01 1vlmA 219 6.20e+01 c.66.1.41 108836 1wo8A 126 6.22e+01 1tbd 134 6.29e+01 2tbd d.89.1.1 40240 1wm3A 72 6.37e+01 1oneA 436 6.41e+01 4enl c.1.11.1,d.54.1.1 29200,38844 1js1X 324 6.44e+01 c.78.1.1,c.78.1.1 71834,71835 1qsgA 265 6.56e+01 1eny c.2.1.2 29935 1i6aA 219 6.70e+01 c.94.1.1 61827 1mexL 213 6.85e+01 b.1.1.1,b.1.1.2 91259,91260 1tl9A 339 6.86e+01 1wvhA 134 6.94e+01 1wy7A 207 7.02e+01 2eryA 172 7.03e+01 1vicA 262 7.08e+01 c.68.1.13 100756 2bh1A 250 7.09e+01 1u11A 182 7.12e+01 c.23.8.1 107576 1keaA 221 7.13e+01 a.96.1.2 68491 1kk1A 410 7.17e+01 b.43.3.1,b.44.1.1,c.37.1.8 72634,72635,72636 1qy1A 174 7.17e+01 b.60.1.1 96568 1yc7A 124 7.32e+01 2az4A 429 7.38e+01 1i2kA 269 7.40e+01 e.17.1.1 90661 1ois 223 7.40e+01 1a36A e.15.1.1 43267 1ppjE 196 7.50e+01 b.33.1.1,f.23.12.1 104260,104261 1jb9A 316 7.57e+01 1fnc b.43.4.2,c.25.1.1 62840,62841 1xjvA 294 7.59e+01 1fsgA 233 7.67e+01 1qk3A c.61.1.1 34029 1tn3 137 7.69e+01 1htn d.169.1.1 42423 2fomB 185 7.81e+01 1kyfA 247 7.82e+01 b.1.10.1,d.105.1.1 73220,73221 2al2A 436 7.87e+01 1xmpA 170 7.93e+01 1o50A 157 8.05e+01 d.37.1.1,d.37.1.1 92478,92479 1iuqA 367 8.05e+01 c.112.1.1 90703 2rslA 140 8.05e+01 2rslA c.53.1.1 33345 1unlD 208 8.16e+01 2fcjA 119 8.19e+01 1c75A 71 8.28e+01 451c a.3.1.1 15796 2g40A 224 8.33e+01 2irfG 113 8.41e+01 2irfG a.4.5.23 16185 1yksA 440 8.49e+01 1tx4A 198 8.59e+01 1tx4A a.116.1.1 19098 1i1qB 192 8.59e+01 1qdlB c.23.16.1 61544 2axoA 270 8.60e+01 1wdjA 187 8.62e+01 1heiA 451 8.63e+01 1heiA c.37.1.14,c.37.1.14 32463,32464 1zx5A 300 8.70e+01 2c5rA 67 8.73e+01 2a4hA 126 8.81e+01 2gsvA 80 8.84e+01 1zndA 174 8.91e+01 1lba 146 8.95e+01 1lba d.118.1.1 41062 1wcdJ 441 8.95e+01 1ji7A 89 8.97e+01 a.60.1.1 71682 1mzyA 333 8.98e+01 b.6.1.3,b.6.1.3 103848,103849 1y60A 169 8.98e+01