Best Alignments for T0345

To select the top models, SAM generates pairwise alignments of the target sequence and the best-scoring templates. The alignments with the best E-values are presented here.

Warning: E-values smaller than about 0.001 may be overly optimistic.

A2M alignment AL alignment Template E-value Alignment cost FSSP rep SCOP Domain(s)
2f8aA/T0345-2f8aA-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m 2f8aA/T0345-2f8aA-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.al 5.6383e-314.63e-117
1gp1A/T0345-1gp1A-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m 1gp1A/T0345-1gp1A-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.al 1.1732e-304.71e-116 1gp1A c.47.1.10
2gs3A/T0345-2gs3A-t04-global-adpstyle1.a2m 2gs3A/T0345-2gs3A-t04-global-adpstyle1.al 1.9106e-165.41e-63
1xzoA/T0345-1xzoA-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m 1xzoA/T0345-1xzoA-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.al 2.4471e-155.06e-60
2f9sA/T0345-2f9sA-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m 2f9sA/T0345-2f9sA-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.al 3.0287e-111.17e-48
2cvbA/T0345-2cvbA-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m 2cvbA/T0345-2cvbA-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.al 1.4378e-091.80e-39
1xvwA/T0345-1xvwA-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m 1xvwA/T0345-1xvwA-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.al 3.9029e-091.27e-36
2b7kA/T0345-2b7kA-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m 2b7kA/T0345-2b7kA-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.al 5.3464e-082.84e-43
2fy6A/T0345-2fy6A-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m 2fy6A/T0345-2fy6A-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.al 6.3130e-078.63e-30
1zzoA/T0345-1zzoA-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m 1zzoA/T0345-1zzoA-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.al 6.7171e-076.36e-34

Please cite: Karplus, K. and Karchin, R. and Barrett, C. and Tu, S. and Cline, M. and Diekhans, M. and Grate, L. and Casper, J. and Hughey, R. ``What is the value added by human intervention in protein structure prediction?'' Proteins: Structure Function and Genetics 45(S5):86-91,2001