make[1]: Entering directory `/projects/compbio/experiments/protein-predict/casp7/T0344' mkdir -p decoys rm decoys/read-pdb+servers.under cd decoys; shopt -s nullglob ; for x in ../*.ts-submitted* ; do echo ReadConformPDB $x >> read-pdb+servers.under ; done cd decoys; shopt -s nullglob ; for x in *.pdb* ; do echo ReadConformPDB $x >> read-pdb+servers.under ; done cd decoys; shopt -s nullglob ; for x in ../*mer/decoys/*.pdb* ; \ do echo ReadConformPDB $x chain A >> read-pdb+servers.under ; \ y=${x#../} ;\ z=${y/decoys} ;\ a=${z/T0344.} ;\ b=${a%.gz} ;\ c=${b%.pdb} ;\ echo NameConform $c >> read-pdb+servers.under ; \ done cd decoys; shopt -s nullglob ; for x in servers/*.pdb.gz ; do \ echo ReadConformPDB $x >> read-pdb+servers.under ; \ y=${x%.pdb.gz} ; \ z=${y#servers/} ; \ echo NameConform $z >> read-pdb+servers.under ; \ echo SCWRLConform >> read-pdb+servers.under ; \ echo NameConform $z-scwrl >> read-pdb+servers.under ; \ done chgrp protein decoys/read-pdb+servers.under chmod g+w decoys/read-pdb+servers.under rm -f decoys/evaluate.predburial.rdb sed -e s/XXX0000/T0344/ -e s/START_COL/1/ \ -e s/COSTFCN/predburial/ \ -e s/_domain// \ -e s/read-pdb/read-pdb+servers/ \ -e s/REAL_PDB// \ < /projects/compbio/experiments/protein-predict/casp7/starter-directory/evaluate.under \ | nice -2 /cse/grads/jarchie/projects/cvs/karplus/undertaker/undertaker # command:# Seed set to 1173372066 # command:# Prefix for input files set to /projects/compbio/experiments/undertaker/atoms-inputs/ # command:# reading monomeric-50pc.atoms # After reading monomeric-50pc.atoms have 448 chains in training database # Count of chains,residues,atoms: 448,112605,876684 # 109826 residues have no bad marker # 665 residues lack atoms needed to compute omega # 322 residues have cis peptide # number of each bad type: # NON_STANDARD_RESIDUE 6 # HAS_OXT 325 # TOO_MANY_ATOMS 1 # TOO_FEW_ATOMS 523 # HAS_UNKNOWN_ATOMS 2 # HAS_DUPLICATE_ATOMS 0 # CHAIN_BREAK_BEFORE 208 # NON_PLANAR_PEPTIDE 143 # BAD_PEPTIDE 1959 # Note: may sum to more than number of residues, # because one residue may have multiple problems # command:# Reading rotamer library from dunbrack-1332.rot # command:# Prefix for input files set to /projects/compbio/experiments/undertaker/spots/ # command:# ReadAtomType exp-pdb.types Read AtomType exp-pdb with 49 types. # command:# ReadClashTable exp-pdb-2191-2symm.clash # Read ClashTable exp-pdb-2191-2symm checking bonds symmetric at MaxSep 2 # command:# command:CPU_time= 6.20006 sec, elapsed time= 6.2579 sec) # command:# Reading spots from monomeric-50pc-dry-5.spot Read prototypes from /projects/compbio/experiments/undertaker/spots/../normalize_prototypes/prototypes # reading histogram from smoothed-monomeric-50pc-dry-5.hist # created burial cost function dry5 with radius 5 with spots at monomeric-50pc-dry-5.spot # command:# Reading spots from monomeric-50pc-wet-6.5.spot Read prototypes from /projects/compbio/experiments/undertaker/spots/../normalize_prototypes/prototypes # reading histogram from smoothed-monomeric-50pc-wet-6.5.hist # created burial cost function wet6.5 with radius 6.5 with spots at monomeric-50pc-wet-6.5.spot # command:# Reading spots from monomeric-50pc-dry-6.5.spot Read prototypes from /projects/compbio/experiments/undertaker/spots/../normalize_prototypes/prototypes # reading histogram from smoothed-monomeric-50pc-dry-6.5.hist # created burial cost function dry6.5 with radius 6.5 with spots at monomeric-50pc-dry-6.5.spot # command:# Reading spots from monomeric-50pc-generic-6.5.spot Read prototypes from /projects/compbio/experiments/undertaker/spots/../normalize_prototypes/prototypes # reading histogram from smoothed-monomeric-50pc-generic-6.5.hist # created burial cost function gen6.5 with radius 6.5 with spots at monomeric-50pc-generic-6.5.spot # command:# Reading spots from near-backbone-center.spot # reading histogram from smoothed-near-backbone-2spot.hist # Reading spots from near-backbone-count.spot # created burial cost function near_backbone with radius 9.65 with spots at near-backbone-center.spot counting only near-backbone-count.spot # command:# Reading spots from way-back-center.spot # reading histogram from smoothed-way-back-2spot.hist # Reading spots from way-back-count.spot # created burial cost function way_back with radius 8.9 with spots at way-back-center.spot counting only way-back-count.spot # command:# Reading spots from monomeric-50pc-dry-8.spot Read prototypes from /projects/compbio/experiments/undertaker/spots/../normalize_prototypes/prototypes # reading histogram from smoothed-monomeric-50pc-dry-8.hist # created burial cost function dry8 with radius 8 with spots at monomeric-50pc-dry-8.spot # command:# Reading spots from monomeric-50pc-dry-10.spot Read prototypes from /projects/compbio/experiments/undertaker/spots/../normalize_prototypes/prototypes # reading histogram from smoothed-monomeric-50pc-dry-10.hist # created burial cost function dry10 with radius 10 with spots at monomeric-50pc-dry-10.spot # command:# Reading spots from monomeric-50pc-dry-12.spot Read prototypes from /projects/compbio/experiments/undertaker/spots/../normalize_prototypes/prototypes # reading histogram from smoothed-monomeric-50pc-dry-12.hist # created burial cost function dry12 with radius 12 with spots at monomeric-50pc-dry-12.spot # command:# reading histogram from dunbrack-2191-alpha.hist # created alpha cost function alpha with offset 0 and 360 bins # command:# reading histogram from dunbrack-2191-alpha-1.hist # created alpha cost function alpha_prev with offset -1 and 360 bins # command:# Prefix for input files set to /projects/compbio/lib/alphabet/ # command:# Read 3 alphabets from alpha.alphabet # command:CPU_time= 6.27705 sec, elapsed time= 6.35582 sec) # command:# Prefix for input files set to # command:# Making conformation for sequence T0344 numbered 1 through 229 Created new target T0344 from T0344.a2m # command:# command:# No conformations to remove in PopConform # command:# cleared Id set # command:# command:Error: ReadConformPDBidsNo chains found for ID set: # command:# Saving current conformation as real # command:# Prefix for output files set to decoys/ # command:# SetRealCost created real_cost = # ( 50 * real_hbond + 50 * real_hbond_u + 50 * decoy_hbond + 50 * decoy_hbond_u + 10 * real_NO_hbond + 10 * real_NO_hbond_u + 10 * decoy_NO_hbond + 10 * decoy_NO_hbond_u + 10 * knot + 200 * clens + 0 * rmsd + 35 * log_rmsd + 0 * rmsd_ca + 30 * log_rmsd_ca + 1 * GDT + 1 * smooth_GDT + 0.2 * missing_atoms ) # command:# SetCost created cost = # ) # command:# reading script from file predburial.costfcn # Read 5 alphabets from /projects/compbio/lib/alphabet/two-spot-burial.alphabet # created predicted BurialPredCostFcn pred_burial2k # created predicted BurialPredCostFcn pred_burial2k_simple # created predicted BurialPredCostFcn pred_burial04 # created predicted BurialPredCostFcn pred_burial04_simple # created predicted BurialPredCostFcn pred_burial06 # created predicted BurialPredCostFcn pred_burial06_simple # reading predictions from T0344.t2k.alpha.rdb # created predicted alpha cost function pred_alpha2k with 360 bins smoothing outer_iter=2 inner_iter=1 width=7 # reading predictions from T0344.t04.alpha.rdb # created predicted alpha cost function pred_alpha04 with 360 bins smoothing outer_iter=2 inner_iter=1 width=7 # reading predictions from T0344.t06.alpha.rdb # created predicted alpha cost function pred_alpha06 with 360 bins smoothing outer_iter=2 inner_iter=1 width=7 # SetCost created cost = # ( 15 * wet6.5(6.5, /log(length)) + 5 * near_backbone(9.65) + 5 * way_back(8.9) + 15 * dry5(5) + 20 * dry6.5(6.5) + 15 * dry8(8) + 5 * dry12(12) + 5 * pred_burial2k_simple(9.65) + 5 * pred_burial2k(9.65) + 5 * pred_burial04_simple(9.65) + 5 * pred_burial04(9.65) + 5 * pred_burial06_simple(9.65) + 5 * pred_burial06(9.65) + 2 * phobic_fit + 10 * n_ca_c + 20 * bad_peptide + 5 * sidechain + 8 * bystroff + 20 * soft_clashes + 2 * backbone_clashes + 50 * break + 3 * pred_alpha2k + 4 * pred_alpha04 + 5 * pred_alpha06 + 5 * hbond_geom + 10 * hbond_geom_backbone + 50 * hbond_geom_beta + 100 * hbond_geom_beta_pair + 1 * missing_atoms ) # command:CPU_time= 9.08262 sec, elapsed time= 9.70688 sec) # command:# Prefix for input files set to # command:# ReadConformPDB reading from PDB file model1.ts-submitted looking for model 1 # Found a chain break before 223 # copying to AlignedFragments data structure # command:# fraction of real conformation used = 1 # GDT_score = -7.75109 # GDT_score(maxd=8,maxw=2.9)= -6.89057 # GDT_score(maxd=8,maxw=3.2)= -6.53115 # GDT_score(maxd=8,maxw=3.5)= -6.23335 # GDT_score(maxd=10,maxw=3.8)= -7.24516 # GDT_score(maxd=10,maxw=4)= -7.03574 # GDT_score(maxd=10,maxw=4.2)= -6.83761 # GDT_score(maxd=12,maxw=4.3)= -7.92361 # GDT_score(maxd=12,maxw=4.5)= -7.69565 # GDT_score(maxd=12,maxw=4.7)= -7.47966 # GDT_score(maxd=14,maxw=5.2)= -8.00885 # GDT_score(maxd=14,maxw=5.5)= -7.71492 # command:# Prefix for output files set to # command:# command:# Prefix for output files set to decoys/ # command:# request to SCWRL produces command: ulimit -t 207 ; scwrl -i /var/tmp/to_scwrl_377276974.pdb -s /var/tmp/to_scwrl_377276974.seq -o /var/tmp/from_scwrl_377276974.pdb > /var/tmp/scwrl_377276974.log Error: can't open any of /var/tmp/from_scwrl_377276974.pdb or /var/tmp/from_scwrl_377276974_b.pdb or /var/tmp/from_scwrl_377276974_a.pdb Error: no new SCWRL conformation added # command:# naming current conformation model1-scwrl # command:# ReadConformPDB reading from PDB file model2.ts-submitted looking for model 1 # Found a chain break before 213 # copying to AlignedFragments data structure # command:# fraction of real conformation used = 1 # GDT_score = -8.40611 # GDT_score(maxd=8,maxw=2.9)= -7.65187 # GDT_score(maxd=8,maxw=3.2)= -7.36845 # GDT_score(maxd=8,maxw=3.5)= -7.10274 # GDT_score(maxd=10,maxw=3.8)= -7.83785 # GDT_score(maxd=10,maxw=4)= -7.62953 # GDT_score(maxd=10,maxw=4.2)= -7.43258 # GDT_score(maxd=12,maxw=4.3)= -8.27433 # GDT_score(maxd=12,maxw=4.5)= -8.06184 # GDT_score(maxd=12,maxw=4.7)= -7.86744 # GDT_score(maxd=14,maxw=5.2)= -8.31312 # GDT_score(maxd=14,maxw=5.5)= -8.02641 # command:# request to SCWRL produces command: ulimit -t 207 ; scwrl -i /var/tmp/to_scwrl_1716297830.pdb -s /var/tmp/to_scwrl_1716297830.seq -o /var/tmp/from_scwrl_1716297830.pdb > /var/tmp/scwrl_1716297830.log Error: can't open any of /var/tmp/from_scwrl_1716297830.pdb or /var/tmp/from_scwrl_1716297830_b.pdb or /var/tmp/from_scwrl_1716297830_a.pdb Error: no new SCWRL conformation added # command:# naming current conformation model2-scwrl # command:# ReadConformPDB reading from PDB file model3.ts-submitted looking for model 1 # Found a chain break before 223 # copying to AlignedFragments data structure # command:# fraction of real conformation used = 1 # GDT_score = -8.18777 # GDT_score(maxd=8,maxw=2.9)= -7.48416 # GDT_score(maxd=8,maxw=3.2)= -7.18606 # GDT_score(maxd=8,maxw=3.5)= -6.88281 # GDT_score(maxd=10,maxw=3.8)= -7.79655 # GDT_score(maxd=10,maxw=4)= -7.58139 # GDT_score(maxd=10,maxw=4.2)= -7.38673 # GDT_score(maxd=12,maxw=4.3)= -8.41684 # GDT_score(maxd=12,maxw=4.5)= -8.19802 # GDT_score(maxd=12,maxw=4.7)= -7.99783 # GDT_score(maxd=14,maxw=5.2)= -8.50414 # GDT_score(maxd=14,maxw=5.5)= -8.20268 # command:# request to SCWRL produces command: ulimit -t 207 ; scwrl -i /var/tmp/to_scwrl_1442710615.pdb -s /var/tmp/to_scwrl_1442710615.seq -o /var/tmp/from_scwrl_1442710615.pdb > /var/tmp/scwrl_1442710615.log Error: can't open any of /var/tmp/from_scwrl_1442710615.pdb or /var/tmp/from_scwrl_1442710615_b.pdb or /var/tmp/from_scwrl_1442710615_a.pdb Error: no new SCWRL conformation added # command:# naming current conformation model3-scwrl # command:# ReadConformPDB reading from PDB file model4.ts-submitted looking for model 1 # Found a chain break before 169 # copying to AlignedFragments data structure # command:# fraction of real conformation used = 1 # GDT_score = -8.29694 # GDT_score(maxd=8,maxw=2.9)= -7.70477 # GDT_score(maxd=8,maxw=3.2)= -7.41603 # GDT_score(maxd=8,maxw=3.5)= -7.15467 # GDT_score(maxd=10,maxw=3.8)= -7.90217 # GDT_score(maxd=10,maxw=4)= -7.70693 # GDT_score(maxd=10,maxw=4.2)= -7.50629 # GDT_score(maxd=12,maxw=4.3)= -8.42343 # GDT_score(maxd=12,maxw=4.5)= -8.20273 # GDT_score(maxd=12,maxw=4.7)= -7.98375 # GDT_score(maxd=14,maxw=5.2)= -8.4301 # GDT_score(maxd=14,maxw=5.5)= -8.13701 # command:# request to SCWRL produces command: ulimit -t 207 ; scwrl -i /var/tmp/to_scwrl_268846272.pdb -s /var/tmp/to_scwrl_268846272.seq -o /var/tmp/from_scwrl_268846272.pdb > /var/tmp/scwrl_268846272.log Error: can't open any of /var/tmp/from_scwrl_268846272.pdb or /var/tmp/from_scwrl_268846272_b.pdb or /var/tmp/from_scwrl_268846272_a.pdb Error: no new SCWRL conformation added # command:# naming current conformation model4-scwrl # command:# ReadConformPDB reading from PDB file model5.ts-submitted looking for model 1 # Found a chain break before 222 # copying to AlignedFragments data structure # command:# fraction of real conformation used = 1 # GDT_score = -6.44105 # GDT_score(maxd=8,maxw=2.9)= -5.76795 # GDT_score(maxd=8,maxw=3.2)= -5.51378 # GDT_score(maxd=8,maxw=3.5)= -5.27805 # GDT_score(maxd=10,maxw=3.8)= -6.1866 # GDT_score(maxd=10,maxw=4)= -6.00828 # GDT_score(maxd=10,maxw=4.2)= -5.84693 # GDT_score(maxd=12,maxw=4.3)= -6.88884 # GDT_score(maxd=12,maxw=4.5)= -6.69912 # GDT_score(maxd=12,maxw=4.7)= -6.52554 # GDT_score(maxd=14,maxw=5.2)= -7.12259 # GDT_score(maxd=14,maxw=5.5)= -6.877 # command:# request to SCWRL produces command: ulimit -t 207 ; scwrl -i /var/tmp/to_scwrl_1901823457.pdb -s /var/tmp/to_scwrl_1901823457.seq -o /var/tmp/from_scwrl_1901823457.pdb > /var/tmp/scwrl_1901823457.log Error: can't open any of /var/tmp/from_scwrl_1901823457.pdb or /var/tmp/from_scwrl_1901823457_b.pdb or /var/tmp/from_scwrl_1901823457_a.pdb Error: no new SCWRL conformation added # command:# naming current conformation model5-scwrl # command:# Prefix for input files set to decoys/ # command:# ReadConformPDB reading from PDB file T0344.try1-opt2.pdb looking for model 1 # Found a chain break before 227 # copying to AlignedFragments data structure # command:# fraction of real conformation used = 1 # GDT_score = -7.96943 # GDT_score(maxd=8,maxw=2.9)= -6.71043 # GDT_score(maxd=8,maxw=3.2)= -6.45587 # GDT_score(maxd=8,maxw=3.5)= -6.23938 # GDT_score(maxd=10,maxw=3.8)= -7.4958 # GDT_score(maxd=10,maxw=4)= -7.31752 # GDT_score(maxd=10,maxw=4.2)= -7.15622 # GDT_score(maxd=12,maxw=4.3)= -8.63362 # GDT_score(maxd=12,maxw=4.5)= -8.42458 # GDT_score(maxd=12,maxw=4.7)= -8.21827 # GDT_score(maxd=14,maxw=5.2)= -9.17277 # GDT_score(maxd=14,maxw=5.5)= -8.83577 # command:# Prefix for output files set to # command:# command:# Prefix for output files set to decoys/ # command:# Prefix for input files set to # command:# ReadConformPDB reading from PDB file T0344.undertaker-align.pdb looking for model 1 # WARNING: incomplete conformation T0344 can't currently be optimized by undertaker # command:# naming current conformation align1 # command:# fraction of real conformation used = 0.606987 # GDT_score = -7.42358 # GDT_score(maxd=8,maxw=2.9)= -6.52596 # GDT_score(maxd=8,maxw=3.2)= -6.2826 # GDT_score(maxd=8,maxw=3.5)= -6.08096 # GDT_score(maxd=10,maxw=3.8)= -7.00314 # GDT_score(maxd=10,maxw=4)= -6.84949 # GDT_score(maxd=10,maxw=4.2)= -6.71047 # GDT_score(maxd=12,maxw=4.3)= -7.74639 # GDT_score(maxd=12,maxw=4.5)= -7.57678 # GDT_score(maxd=12,maxw=4.7)= -7.41379 # GDT_score(maxd=14,maxw=5.2)= -8.02482 # GDT_score(maxd=14,maxw=5.5)= -7.75383 # command:# ReadConformPDB reading from PDB file T0344.undertaker-align.pdb looking for model 2 # WARNING: incomplete conformation T0344 can't currently be optimized by undertaker # command:# naming current conformation align2 # command:# fraction of real conformation used = 0.366812 # GDT_score = -6.22271 # GDT_score(maxd=8,maxw=2.9)= -5.68354 # GDT_score(maxd=8,maxw=3.2)= -5.47822 # GDT_score(maxd=8,maxw=3.5)= -5.3081 # GDT_score(maxd=10,maxw=3.8)= -5.97671 # GDT_score(maxd=10,maxw=4)= -5.85255 # GDT_score(maxd=10,maxw=4.2)= -5.74021 # GDT_score(maxd=12,maxw=4.3)= -6.517 # GDT_score(maxd=12,maxw=4.5)= -6.38262 # GDT_score(maxd=12,maxw=4.7)= -6.25967 # GDT_score(maxd=14,maxw=5.2)= -6.7203 # GDT_score(maxd=14,maxw=5.5)= -6.54429 # command:# ReadConformPDB reading from PDB file T0344.undertaker-align.pdb looking for model 3 # WARNING: incomplete conformation T0344 can't currently be optimized by undertaker # command:# naming current conformation align3 # command:# ReadConformPDB reading from PDB file T0344.undertaker-align.pdb looking for model 4 # WARNING: incomplete conformation T0344 can't currently be optimized by undertaker # command:# naming current conformation align4 # command:# ReadConformPDB reading from PDB file T0344.undertaker-align.pdb looking for model 5 # WARNING: incomplete conformation T0344 can't currently be optimized by undertaker # command:# naming current conformation align5 # command:# Prefix for input files set to decoys/ # command:# reading script from file read-pdb+servers.under # ReadConformPDB reading from PDB file ../model1.ts-submitted looking for model 1 # Found a chain break before 223 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file ../model2.ts-submitted looking for model 1 # Found a chain break before 213 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file ../model3.ts-submitted looking for model 1 # Found a chain break before 223 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file ../model4.ts-submitted looking for model 1 # Found a chain break before 169 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file ../model5.ts-submitted looking for model 1 # Found a chain break before 222 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0344.chimera.pdb.gz looking for model 1 # Found a chain break before 223 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0344.model1_renum.pdb.gz looking for model 1 # Found a chain break before 222 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0344.model2.pdb.gz looking for model 1 # Found a chain break before 228 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0344.sub-chimera.pdb.gz looking for model 1 # Found a chain break before 228 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0344.try1-opt1-scwrl.pdb.gz looking for model 1 # Found a chain break before 222 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0344.try1-opt1.pdb.gz looking for model 1 # Found a chain break before 222 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0344.try1-opt2.gromacs0.pdb.gz looking for model 1 # Found a chain break before 211 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0344.try1-opt2.gromacs0.repack-nonPC.pdb.gz looking for model 1 # Found a chain break before 211 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0344.try1-opt2.pdb.gz looking for model 1 # Found a chain break before 227 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0344.try1-opt2.repack-nonPC.pdb.gz looking for model 1 # Found a chain break before 227 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0344.try10-opt1-scwrl.pdb.gz looking for model 1 # Found a chain break before 216 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0344.try10-opt1.pdb.gz looking for model 1 # Found a chain break before 216 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0344.try10-opt2.gromacs0.pdb.gz looking for model 1 # Found a chain break before 192 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0344.try10-opt2.gromacs0.repack-nonPC.pdb.gz looking for model 1 # Found a chain break before 192 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0344.try10-opt2.pdb.gz looking for model 1 # Found a chain break before 224 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0344.try10-opt2.repack-nonPC.pdb.gz looking for model 1 # Found a chain break before 224 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0344.try11-opt1-scwrl.pdb.gz looking for model 1 # Found a chain break before 225 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0344.try11-opt1.pdb.gz looking for model 1 # Found a chain break before 225 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0344.try11-opt2.gromacs0.pdb.gz looking for model 1 # Found a chain break before 217 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0344.try11-opt2.gromacs0.repack-nonPC.pdb.gz looking for model 1 # Found a chain break before 217 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0344.try11-opt2.pdb.gz looking for model 1 # Found a chain break before 225 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0344.try11-opt2.repack-nonPC.pdb.gz looking for model 1 # Found a chain break before 225 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0344.try12-opt1-scwrl.pdb.gz looking for model 1 # Found a chain break before 214 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0344.try12-opt1.pdb.gz looking for model 1 # Found a chain break before 214 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0344.try12-opt2.gromacs0.pdb.gz looking for model 1 # Found a chain break before 192 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0344.try12-opt2.gromacs0.repack-nonPC.pdb.gz looking for model 1 # Found a chain break before 192 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0344.try12-opt2.pdb.gz looking for model 1 # Found a chain break before 214 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0344.try12-opt2.repack-nonPC.pdb.gz looking for model 1 # Found a chain break before 214 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0344.try13-opt1-scwrl.pdb.gz looking for model 1 # Found a chain break before 219 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0344.try13-opt1.pdb.gz looking for model 1 # Found a chain break before 219 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0344.try13-opt2.gromacs0.pdb.gz looking for model 1 # Found a chain break before 228 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0344.try13-opt2.gromacs0.repack-nonPC.pdb.gz looking for model 1 # Found a chain break before 228 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0344.try13-opt2.pdb.gz looking for model 1 # Found a chain break before 222 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0344.try13-opt2.repack-nonPC.pdb.gz looking for model 1 # Found a chain break before 222 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0344.try14-opt1-scwrl.pdb.gz looking for model 1 # Found a chain break before 226 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0344.try14-opt1.pdb.gz looking for model 1 # Found a chain break before 226 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0344.try14-opt2.gromacs0.pdb.gz looking for model 1 # Found a chain break before 224 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0344.try14-opt2.gromacs0.repack-nonPC.pdb.gz looking for model 1 # Found a chain break before 224 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0344.try14-opt2.pdb.gz looking for model 1 # Found a chain break before 226 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0344.try14-opt2.repack-nonPC.pdb.gz looking for model 1 # Found a chain break before 226 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0344.try15-opt1-scwrl.pdb.gz looking for model 1 # Found a chain break before 170 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0344.try15-opt1.pdb.gz looking for model 1 # Found a chain break before 170 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0344.try15-opt2.gromacs0.pdb.gz looking for model 1 # Found a chain break before 203 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0344.try15-opt2.gromacs0.repack-nonPC.pdb.gz looking for model 1 # Found a chain break before 203 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0344.try15-opt2.pdb.gz looking for model 1 # Found a chain break before 207 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0344.try15-opt2.repack-nonPC.pdb.gz looking for model 1 # Found a chain break before 207 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0344.try16-opt1-scwrl.pdb.gz looking for model 1 # Found a chain break before 228 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0344.try16-opt1.pdb.gz looking for model 1 # Found a chain break before 228 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0344.try16-opt2.gromacs0.pdb.gz looking for model 1 # Found a chain break before 210 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0344.try16-opt2.gromacs0.repack-nonPC.pdb.gz looking for model 1 # Found a chain break before 210 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0344.try16-opt2.pdb.gz looking for model 1 # Found a chain break before 223 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0344.try16-opt2.repack-nonPC.pdb.gz looking for model 1 # Found a chain break before 223 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0344.try17-opt1-scwrl.pdb.gz looking for model 1 # Found a chain break before 224 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0344.try17-opt1.pdb.gz looking for model 1 # Found a chain break before 224 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0344.try17-opt2.gromacs0.pdb.gz looking for model 1 # Found a chain break before 212 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0344.try17-opt2.gromacs0.repack-nonPC.pdb.gz looking for model 1 # Found a chain break before 212 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0344.try17-opt2.pdb.gz looking for model 1 # Found a chain break before 224 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0344.try17-opt2.repack-nonPC.pdb.gz looking for model 1 # Found a chain break before 224 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0344.try18-opt1-scwrl.pdb.gz looking for model 1 # Found a chain break before 224 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0344.try18-opt1.pdb.gz looking for model 1 # Found a chain break before 224 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0344.try18-opt2.gromacs0.pdb.gz looking for model 1 # Found a chain break before 220 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0344.try18-opt2.gromacs0.repack-nonPC.pdb.gz looking for model 1 # Found a chain break before 220 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0344.try18-opt2.pdb.gz looking for model 1 # Found a chain break before 224 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0344.try18-opt2.repack-nonPC.pdb.gz looking for model 1 # Found a chain break before 224 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0344.try19-opt1-scwrl.pdb.gz looking for model 1 # Found a chain break before 228 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0344.try19-opt1.pdb.gz looking for model 1 # Found a chain break before 228 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0344.try19-opt2.gromacs0.pdb.gz looking for model 1 # Found a chain break before 218 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0344.try19-opt2.gromacs0.repack-nonPC.pdb.gz looking for model 1 # Found a chain break before 218 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0344.try19-opt2.pdb.gz looking for model 1 # Found a chain break before 228 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0344.try19-opt2.repack-nonPC.pdb.gz looking for model 1 # Found a chain break before 228 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0344.try2-opt1-scwrl.pdb.gz looking for model 1 # Found a chain break before 203 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0344.try2-opt1.pdb.gz looking for model 1 # Found a chain break before 203 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0344.try2-opt2.gromacs0.pdb.gz looking for model 1 # Found a chain break before 209 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0344.try2-opt2.gromacs0.repack-nonPC.pdb.gz looking for model 1 # Found a chain break before 209 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0344.try2-opt2.pdb.gz looking for model 1 # Found a chain break before 224 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0344.try2-opt2.repack-nonPC.pdb.gz looking for model 1 # Found a chain break before 224 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0344.try20-opt1-scwrl.pdb.gz looking for model 1 # Found a chain break before 220 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0344.try20-opt1.pdb.gz looking for model 1 # Found a chain break before 220 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0344.try20-opt2.gromacs0.pdb.gz looking for model 1 # Found a chain break before 220 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0344.try20-opt2.gromacs0.repack-nonPC.pdb.gz looking for model 1 # Found a chain break before 220 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0344.try20-opt2.pdb.gz looking for model 1 # Found a chain break before 220 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0344.try20-opt2.repack-nonPC.pdb.gz looking for model 1 # Found a chain break before 220 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0344.try21-opt1-scwrl.pdb.gz looking for model 1 # Found a chain break before 200 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0344.try21-opt1.pdb.gz looking for model 1 # Found a chain break before 200 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0344.try21-opt2.gromacs0.pdb.gz looking for model 1 # Found a chain break before 203 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0344.try21-opt2.gromacs0.repack-nonPC.pdb.gz looking for model 1 # Found a chain break before 203 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0344.try21-opt2.pdb.gz looking for model 1 # Found a chain break before 224 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0344.try21-opt2.repack-nonPC.pdb.gz looking for model 1 # Found a chain break before 224 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0344.try22-opt1-scwrl.pdb.gz looking for model 1 # Found a chain break before 225 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0344.try22-opt1.pdb.gz looking for model 1 # Found a chain break before 225 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0344.try22-opt2.gromacs0.pdb.gz looking for model 1 # Found a chain break before 207 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0344.try22-opt2.gromacs0.repack-nonPC.pdb.gz looking for model 1 # Found a chain break before 207 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0344.try22-opt2.pdb.gz looking for model 1 # Found a chain break before 225 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0344.try22-opt2.repack-nonPC.pdb.gz looking for model 1 # Found a chain break before 225 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0344.try23-opt1-scwrl.pdb.gz looking for model 1 # Found a chain break before 225 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0344.try23-opt1.pdb.gz looking for model 1 # Found a chain break before 225 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0344.try23-opt2.gromacs0.pdb.gz looking for model 1 # Found a chain break before 207 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0344.try23-opt2.gromacs0.repack-nonPC.pdb.gz looking for model 1 # Found a chain break before 207 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0344.try23-opt2.pdb.gz looking for model 1 # Found a chain break before 225 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0344.try23-opt2.repack-nonPC.pdb.gz looking for model 1 # Found a chain break before 225 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0344.try24-opt1-scwrl.pdb.gz looking for model 1 # Found a chain break before 213 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0344.try24-opt1.pdb.gz looking for model 1 # Found a chain break before 213 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0344.try24-opt2.gromacs0.pdb.gz looking for model 1 # Found a chain break before 227 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0344.try24-opt2.gromacs0.repack-nonPC.pdb.gz looking for model 1 # Found a chain break before 227 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0344.try24-opt2.pdb.gz looking for model 1 # Found a chain break before 213 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0344.try24-opt2.repack-nonPC.pdb.gz looking for model 1 # Found a chain break before 213 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0344.try25-opt1-scwrl.pdb.gz looking for model 1 # Found a chain break before 212 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0344.try25-opt1.pdb.gz looking for model 1 # Found a chain break before 212 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0344.try25-opt2.gromacs0.pdb.gz looking for model 1 # Found a chain break before 223 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0344.try25-opt2.gromacs0.repack-nonPC.pdb.gz looking for model 1 # Found a chain break before 223 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0344.try25-opt2.pdb.gz looking for model 1 # Found a chain break before 223 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0344.try25-opt2.repack-nonPC.pdb.gz looking for model 1 # Found a chain break before 223 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0344.try26-opt1-scwrl.pdb.gz looking for model 1 # Found a chain break before 213 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0344.try26-opt1.pdb.gz looking for model 1 # Found a chain break before 213 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0344.try26-opt2.gromacs0.pdb.gz looking for model 1 # Found a chain break before 194 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0344.try26-opt2.gromacs0.repack-nonPC.pdb.gz looking for model 1 # Found a chain break before 194 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0344.try26-opt2.pdb.gz looking for model 1 # Found a chain break before 213 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0344.try26-opt2.repack-nonPC.pdb.gz looking for model 1 # Found a chain break before 213 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0344.try27-opt1-scwrl.pdb.gz looking for model 1 # Found a chain break before 213 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0344.try27-opt1.pdb.gz looking for model 1 # Found a chain break before 213 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0344.try27-opt2.gromacs0.pdb.gz looking for model 1 # Found a chain break before 227 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0344.try27-opt2.gromacs0.repack-nonPC.pdb.gz looking for model 1 # Found a chain break before 227 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0344.try27-opt2.pdb.gz looking for model 1 # Found a chain break before 213 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0344.try27-opt2.repack-nonPC.pdb.gz looking for model 1 # Found a chain break before 213 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0344.try28-opt1-scwrl.pdb.gz looking for model 1 # Found a chain break before 217 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0344.try28-opt1.pdb.gz looking for model 1 # Found a chain break before 217 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0344.try28-opt2.gromacs0.pdb.gz looking for model 1 # Found a chain break before 217 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0344.try28-opt2.gromacs0.repack-nonPC.pdb.gz looking for model 1 # Found a chain break before 217 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0344.try28-opt2.pdb.gz looking for model 1 # Found a chain break before 217 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0344.try28-opt2.repack-nonPC.pdb.gz looking for model 1 # Found a chain break before 217 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0344.try29-opt1-scwrl.pdb.gz looking for model 1 # Found a chain break before 213 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0344.try29-opt1.pdb.gz looking for model 1 # Found a chain break before 213 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0344.try29-opt2.gromacs0.pdb.gz looking for model 1 # Found a chain break before 169 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0344.try29-opt2.gromacs0.repack-nonPC.pdb.gz looking for model 1 # Found a chain break before 169 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0344.try29-opt2.pdb.gz looking for model 1 # Found a chain break before 213 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0344.try29-opt2.repack-nonPC.pdb.gz looking for model 1 # Found a chain break before 213 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0344.try3-opt1-scwrl.pdb.gz looking for model 1 # Found a chain break before 203 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0344.try3-opt1.pdb.gz looking for model 1 # Found a chain break before 203 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0344.try3-opt2.gromacs0.pdb.gz looking for model 1 # Found a chain break before 207 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0344.try3-opt2.gromacs0.repack-nonPC.pdb.gz looking for model 1 # Found a chain break before 207 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0344.try3-opt2.pdb.gz looking for model 1 # Found a chain break before 226 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0344.try3-opt2.repack-nonPC.pdb.gz looking for model 1 # Found a chain break before 226 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0344.try30-opt1-scwrl.pdb.gz looking for model 1 # Found a chain break before 213 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0344.try30-opt1.pdb.gz looking for model 1 # Found a chain break before 213 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0344.try30-opt2.gromacs0.pdb.gz looking for model 1 # Found a chain break before 173 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0344.try30-opt2.gromacs0.repack-nonPC.pdb.gz looking for model 1 # Found a chain break before 173 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0344.try30-opt2.pdb.gz looking for model 1 # Found a chain break before 213 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0344.try30-opt2.repack-nonPC.pdb.gz looking for model 1 # Found a chain break before 213 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0344.try31-opt1-scwrl.pdb.gz looking for model 1 # Found a chain break before 209 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0344.try31-opt1.pdb.gz looking for model 1 # Found a chain break before 209 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0344.try31-opt2.gromacs0.pdb.gz looking for model 1 # Found a chain break before 214 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0344.try31-opt2.gromacs0.repack-nonPC.pdb.gz looking for model 1 # Found a chain break before 214 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0344.try31-opt2.pdb.gz looking for model 1 # Found a chain break before 227 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0344.try31-opt2.repack-nonPC.pdb.gz looking for model 1 # Found a chain break before 227 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0344.try32-opt1-scwrl.pdb.gz looking for model 1 # Found a chain break before 222 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0344.try32-opt1.pdb.gz looking for model 1 # Found a chain break before 222 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0344.try32-opt2.gromacs0.pdb.gz looking for model 1 # Found a chain break before 214 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0344.try32-opt2.gromacs0.repack-nonPC.pdb.gz looking for model 1 # Found a chain break before 214 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0344.try32-opt2.pdb.gz looking for model 1 # Found a chain break before 222 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0344.try32-opt2.repack-nonPC.pdb.gz looking for model 1 # Found a chain break before 222 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0344.try33-opt1-scwrl.pdb.gz looking for model 1 # Found a chain break before 222 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0344.try33-opt1.pdb.gz looking for model 1 # Found a chain break before 222 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0344.try33-opt2.gromacs0.pdb.gz looking for model 1 # Found a chain break before 215 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0344.try33-opt2.gromacs0.repack-nonPC.pdb.gz looking for model 1 # Found a chain break before 215 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0344.try33-opt2.pdb.gz looking for model 1 # Found a chain break before 222 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0344.try33-opt2.repack-nonPC.pdb.gz looking for model 1 # Found a chain break before 222 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0344.try34-opt1-scwrl.pdb.gz looking for model 1 # Found a chain break before 223 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0344.try34-opt1.pdb.gz looking for model 1 # Found a chain break before 223 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0344.try34-opt2.gromacs0.pdb.gz looking for model 1 # Found a chain break before 219 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0344.try34-opt2.gromacs0.repack-nonPC.pdb.gz looking for model 1 # Found a chain break before 219 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0344.try34-opt2.pdb.gz looking for model 1 # Found a chain break before 223 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0344.try34-opt2.repack-nonPC.pdb.gz looking for model 1 # Found a chain break before 223 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0344.try35-opt1-scwrl.pdb.gz looking for model 1 # Found a chain break before 227 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0344.try35-opt1.pdb.gz looking for model 1 # Found a chain break before 227 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0344.try35-opt2.gromacs0.pdb.gz looking for model 1 # Found a chain break before 201 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0344.try35-opt2.gromacs0.repack-nonPC.pdb.gz looking for model 1 # Found a chain break before 201 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0344.try35-opt2.pdb.gz looking for model 1 # Found a chain break before 227 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0344.try35-opt2.repack-nonPC.pdb.gz looking for model 1 # Found a chain break before 227 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0344.try36-opt1-scwrl.pdb.gz looking for model 1 # Found a chain break before 223 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0344.try36-opt1.pdb.gz looking for model 1 # Found a chain break before 223 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0344.try36-opt2.gromacs0.pdb.gz looking for model 1 # Found a chain break before 219 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0344.try36-opt2.gromacs0.repack-nonPC.pdb.gz looking for model 1 # Found a chain break before 219 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0344.try36-opt2.pdb.gz looking for model 1 # Found a chain break before 223 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0344.try36-opt2.repack-nonPC.pdb.gz looking for model 1 # Found a chain break before 223 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0344.try37-opt1-scwrl.pdb.gz looking for model 1 # Found a chain break before 189 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0344.try37-opt1.pdb.gz looking for model 1 # Found a chain break before 189 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0344.try37-opt2.gromacs0.pdb.gz looking for model 1 # Found a chain break before 208 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0344.try37-opt2.gromacs0.repack-nonPC.pdb.gz looking for model 1 # Found a chain break before 208 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0344.try37-opt2.pdb.gz looking for model 1 # Found a chain break before 228 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0344.try37-opt2.repack-nonPC.pdb.gz looking for model 1 # Found a chain break before 228 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0344.try4-opt1-scwrl.pdb.gz looking for model 1 # Found a chain break before 226 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0344.try4-opt1.pdb.gz looking for model 1 # Found a chain break before 226 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0344.try4-opt2.gromacs0.pdb.gz looking for model 1 # Found a chain break before 211 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0344.try4-opt2.gromacs0.repack-nonPC.pdb.gz looking for model 1 # Found a chain break before 211 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0344.try4-opt2.pdb.gz looking for model 1 # Found a chain break before 226 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0344.try4-opt2.repack-nonPC.pdb.gz looking for model 1 # Found a chain break before 226 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0344.try5-opt1-scwrl.pdb.gz looking for model 1 # Found a chain break before 213 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0344.try5-opt1.pdb.gz looking for model 1 # Found a chain break before 213 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0344.try5-opt2.gromacs0.pdb.gz looking for model 1 # Found a chain break before 226 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0344.try5-opt2.gromacs0.repack-nonPC.pdb.gz looking for model 1 # Found a chain break before 226 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0344.try5-opt2.pdb.gz looking for model 1 # Found a chain break before 213 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0344.try5-opt2.repack-nonPC.pdb.gz looking for model 1 # Found a chain break before 213 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0344.try6-opt1-scwrl.pdb.gz looking for model 1 # Found a chain break before 220 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0344.try6-opt1.pdb.gz looking for model 1 # Found a chain break before 220 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0344.try6-opt2.gromacs0.pdb.gz looking for model 1 # Found a chain break before 218 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0344.try6-opt2.gromacs0.repack-nonPC.pdb.gz looking for model 1 # Found a chain break before 218 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0344.try6-opt2.pdb.gz looking for model 1 # Found a chain break before 220 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0344.try6-opt2.repack-nonPC.pdb.gz looking for model 1 # Found a chain break before 220 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0344.try7-opt1-scwrl.pdb.gz looking for model 1 # Found a chain break before 223 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0344.try7-opt1.pdb.gz looking for model 1 # Found a chain break before 223 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0344.try7-opt2.gromacs0.pdb.gz looking for model 1 # Found a chain break before 220 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0344.try7-opt2.gromacs0.repack-nonPC.pdb.gz looking for model 1 # Found a chain break before 220 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0344.try7-opt2.pdb.gz looking for model 1 # Found a chain break before 225 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0344.try7-opt2.repack-nonPC.pdb.gz looking for model 1 # Found a chain break before 225 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0344.try8-opt1-scwrl.pdb.gz looking for model 1 # Found a chain break before 223 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0344.try8-opt1.pdb.gz looking for model 1 # Found a chain break before 223 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0344.try8-opt2.gromacs0.pdb.gz looking for model 1 # Found a chain break before 227 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0344.try8-opt2.gromacs0.repack-nonPC.pdb.gz looking for model 1 # Found a chain break before 227 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0344.try8-opt2.pdb.gz looking for model 1 # Found a chain break before 223 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0344.try8-opt2.repack-nonPC.pdb.gz looking for model 1 # Found a chain break before 223 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0344.try9-opt1-scwrl.pdb.gz looking for model 1 # Found a chain break before 228 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0344.try9-opt1.pdb.gz looking for model 1 # Found a chain break before 228 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0344.try9-opt2.gromacs0.pdb.gz looking for model 1 # Found a chain break before 214 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0344.try9-opt2.gromacs0.repack-nonPC.pdb.gz looking for model 1 # Found a chain break before 214 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0344.try9-opt2.pdb.gz looking for model 1 # Found a chain break before 219 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0344.try9-opt2.repack-nonPC.pdb.gz looking for model 1 # Found a chain break before 219 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file robetta-model1.pdb.gz looking for model 1 # Found a chain break before 205 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file robetta-model10.pdb.gz looking for model 1 # Found a chain break before 215 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file robetta-model2.pdb.gz looking for model 1 # Found a chain break before 214 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file robetta-model3.pdb.gz looking for model 1 # Found a chain break before 140 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file robetta-model4.pdb.gz looking for model 1 # Found a chain break before 214 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file robetta-model5.pdb.gz looking for model 1 # Found a chain break before 223 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file robetta-model6.pdb.gz looking for model 1 # Found a chain break before 147 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file robetta-model7.pdb.gz looking for model 1 # Found a chain break before 202 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file robetta-model8.pdb.gz looking for model 1 # Found a chain break before 214 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file robetta-model9.pdb.gz looking for model 1 # Found a chain break before 195 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file servers/3D-JIGSAW_POPULUS_TS1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0344 can't currently be optimized by undertaker # naming current conformation 3D-JIGSAW_POPULUS_TS1 # request to SCWRL produces command: ulimit -t 207 ; scwrl -i /var/tmp/to_scwrl_1557772654.pdb -s /var/tmp/to_scwrl_1557772654.seq -o /var/tmp/from_scwrl_1557772654.pdb > /var/tmp/scwrl_1557772654.log Error: can't open any of /var/tmp/from_scwrl_1557772654.pdb or /var/tmp/from_scwrl_1557772654_b.pdb or /var/tmp/from_scwrl_1557772654_a.pdb Error: no new SCWRL conformation added # naming current conformation 3D-JIGSAW_POPULUS_TS1-scwrl # ReadConformPDB reading from PDB file servers/3D-JIGSAW_POPULUS_TS2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0344 can't currently be optimized by undertaker # copying to AlignedFragments data structure # naming current conformation 3D-JIGSAW_POPULUS_TS2 # request to SCWRL produces command: ulimit -t 207 ; scwrl -i /var/tmp/to_scwrl_840098853.pdb -s /var/tmp/to_scwrl_840098853.seq -o /var/tmp/from_scwrl_840098853.pdb > /var/tmp/scwrl_840098853.log Error: can't open any of /var/tmp/from_scwrl_840098853.pdb or /var/tmp/from_scwrl_840098853_b.pdb or /var/tmp/from_scwrl_840098853_a.pdb Error: no new SCWRL conformation added # naming current conformation 3D-JIGSAW_POPULUS_TS2-scwrl # ReadConformPDB reading from PDB file servers/3D-JIGSAW_POPULUS_TS3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0344 can't currently be optimized by undertaker # naming current conformation 3D-JIGSAW_POPULUS_TS3 # request to SCWRL produces command: ulimit -t 207 ; scwrl -i /var/tmp/to_scwrl_1657926660.pdb -s /var/tmp/to_scwrl_1657926660.seq -o /var/tmp/from_scwrl_1657926660.pdb > /var/tmp/scwrl_1657926660.log Error: can't open any of /var/tmp/from_scwrl_1657926660.pdb or /var/tmp/from_scwrl_1657926660_b.pdb or /var/tmp/from_scwrl_1657926660_a.pdb Error: no new SCWRL conformation added # naming current conformation 3D-JIGSAW_POPULUS_TS3-scwrl # ReadConformPDB reading from PDB file servers/3D-JIGSAW_POPULUS_TS4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0344 can't currently be optimized by undertaker # naming current conformation 3D-JIGSAW_POPULUS_TS4 # request to SCWRL produces command: ulimit -t 207 ; scwrl -i /var/tmp/to_scwrl_1290517684.pdb -s /var/tmp/to_scwrl_1290517684.seq -o /var/tmp/from_scwrl_1290517684.pdb > /var/tmp/scwrl_1290517684.log Error: can't open any of /var/tmp/from_scwrl_1290517684.pdb or /var/tmp/from_scwrl_1290517684_b.pdb or /var/tmp/from_scwrl_1290517684_a.pdb Error: no new SCWRL conformation added # naming current conformation 3D-JIGSAW_POPULUS_TS4-scwrl # ReadConformPDB reading from PDB file servers/3D-JIGSAW_POPULUS_TS5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0344 can't currently be optimized by undertaker # naming current conformation 3D-JIGSAW_POPULUS_TS5 # request to SCWRL produces command: ulimit -t 207 ; scwrl -i /var/tmp/to_scwrl_1632303399.pdb -s /var/tmp/to_scwrl_1632303399.seq -o /var/tmp/from_scwrl_1632303399.pdb > /var/tmp/scwrl_1632303399.log Error: can't open any of /var/tmp/from_scwrl_1632303399.pdb or /var/tmp/from_scwrl_1632303399_b.pdb or /var/tmp/from_scwrl_1632303399_a.pdb Error: no new SCWRL conformation added # naming current conformation 3D-JIGSAW_POPULUS_TS5-scwrl # ReadConformPDB reading from PDB file servers/3D-JIGSAW_RECOM_TS1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0344 can't currently be optimized by undertaker # naming current conformation 3D-JIGSAW_RECOM_TS1 # request to SCWRL produces command: ulimit -t 207 ; scwrl -i /var/tmp/to_scwrl_1796299161.pdb -s /var/tmp/to_scwrl_1796299161.seq -o /var/tmp/from_scwrl_1796299161.pdb > /var/tmp/scwrl_1796299161.log Error: can't open any of /var/tmp/from_scwrl_1796299161.pdb or /var/tmp/from_scwrl_1796299161_b.pdb or /var/tmp/from_scwrl_1796299161_a.pdb Error: no new SCWRL conformation added # naming current conformation 3D-JIGSAW_RECOM_TS1-scwrl # ReadConformPDB reading from PDB file servers/3D-JIGSAW_RECOM_TS2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0344 can't currently be optimized by undertaker # naming current conformation 3D-JIGSAW_RECOM_TS2 # request to SCWRL produces command: ulimit -t 207 ; scwrl -i /var/tmp/to_scwrl_871862260.pdb -s /var/tmp/to_scwrl_871862260.seq -o /var/tmp/from_scwrl_871862260.pdb > /var/tmp/scwrl_871862260.log Error: can't open any of /var/tmp/from_scwrl_871862260.pdb or /var/tmp/from_scwrl_871862260_b.pdb or /var/tmp/from_scwrl_871862260_a.pdb Error: no new SCWRL conformation added # naming current conformation 3D-JIGSAW_RECOM_TS2-scwrl # ReadConformPDB reading from PDB file servers/3D-JIGSAW_RECOM_TS3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0344 can't currently be optimized by undertaker # naming current conformation 3D-JIGSAW_RECOM_TS3 # request to SCWRL produces command: ulimit -t 207 ; scwrl -i /var/tmp/to_scwrl_1433039871.pdb -s /var/tmp/to_scwrl_1433039871.seq -o /var/tmp/from_scwrl_1433039871.pdb > /var/tmp/scwrl_1433039871.log Error: can't open any of /var/tmp/from_scwrl_1433039871.pdb or /var/tmp/from_scwrl_1433039871_b.pdb or /var/tmp/from_scwrl_1433039871_a.pdb Error: no new SCWRL conformation added # naming current conformation 3D-JIGSAW_RECOM_TS3-scwrl # ReadConformPDB reading from PDB file servers/3D-JIGSAW_RECOM_TS4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0344 can't currently be optimized by undertaker # naming current conformation 3D-JIGSAW_RECOM_TS4 # request to SCWRL produces command: ulimit -t 207 ; scwrl -i /var/tmp/to_scwrl_1970361134.pdb -s /var/tmp/to_scwrl_1970361134.seq -o /var/tmp/from_scwrl_1970361134.pdb > /var/tmp/scwrl_1970361134.log Error: can't open any of /var/tmp/from_scwrl_1970361134.pdb or /var/tmp/from_scwrl_1970361134_b.pdb or /var/tmp/from_scwrl_1970361134_a.pdb Error: no new SCWRL conformation added # naming current conformation 3D-JIGSAW_RECOM_TS4-scwrl # ReadConformPDB reading from PDB file servers/3D-JIGSAW_RECOM_TS5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0344 can't currently be optimized by undertaker # naming current conformation 3D-JIGSAW_RECOM_TS5 # request to SCWRL produces command: ulimit -t 207 ; scwrl -i /var/tmp/to_scwrl_881909239.pdb -s /var/tmp/to_scwrl_881909239.seq -o /var/tmp/from_scwrl_881909239.pdb > /var/tmp/scwrl_881909239.log Error: can't open any of /var/tmp/from_scwrl_881909239.pdb or /var/tmp/from_scwrl_881909239_b.pdb or /var/tmp/from_scwrl_881909239_a.pdb Error: no new SCWRL conformation added # naming current conformation 3D-JIGSAW_RECOM_TS5-scwrl # ReadConformPDB reading from PDB file servers/3D-JIGSAW_TS1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0344 can't currently be optimized by undertaker # copying to AlignedFragments data structure # naming current conformation 3D-JIGSAW_TS1 # request to SCWRL produces command: ulimit -t 207 ; scwrl -i /var/tmp/to_scwrl_1204734534.pdb -s /var/tmp/to_scwrl_1204734534.seq -o /var/tmp/from_scwrl_1204734534.pdb > /var/tmp/scwrl_1204734534.log Error: can't open any of /var/tmp/from_scwrl_1204734534.pdb or /var/tmp/from_scwrl_1204734534_b.pdb or /var/tmp/from_scwrl_1204734534_a.pdb Error: no new SCWRL conformation added # naming current conformation 3D-JIGSAW_TS1-scwrl # ReadConformPDB reading from PDB file servers/3D-JIGSAW_TS2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0344 can't currently be optimized by undertaker # naming current conformation 3D-JIGSAW_TS2 # request to SCWRL produces command: ulimit -t 207 ; scwrl -i /var/tmp/to_scwrl_1657271966.pdb -s /var/tmp/to_scwrl_1657271966.seq -o /var/tmp/from_scwrl_1657271966.pdb > /var/tmp/scwrl_1657271966.log Error: can't open any of /var/tmp/from_scwrl_1657271966.pdb or /var/tmp/from_scwrl_1657271966_b.pdb or /var/tmp/from_scwrl_1657271966_a.pdb Error: no new SCWRL conformation added # naming current conformation 3D-JIGSAW_TS2-scwrl # ReadConformPDB reading from PDB file servers/3D-JIGSAW_TS3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0344 can't currently be optimized by undertaker # naming current conformation 3D-JIGSAW_TS3 # request to SCWRL produces command: ulimit -t 207 ; scwrl -i /var/tmp/to_scwrl_830815389.pdb -s /var/tmp/to_scwrl_830815389.seq -o /var/tmp/from_scwrl_830815389.pdb > /var/tmp/scwrl_830815389.log Error: can't open any of /var/tmp/from_scwrl_830815389.pdb or /var/tmp/from_scwrl_830815389_b.pdb or /var/tmp/from_scwrl_830815389_a.pdb Error: no new SCWRL conformation added # naming current conformation 3D-JIGSAW_TS3-scwrl # ReadConformPDB reading from PDB file servers/3D-JIGSAW_TS4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0344 can't currently be optimized by undertaker # naming current conformation 3D-JIGSAW_TS4 # request to SCWRL produces command: ulimit -t 207 ; scwrl -i /var/tmp/to_scwrl_1865605582.pdb -s /var/tmp/to_scwrl_1865605582.seq -o /var/tmp/from_scwrl_1865605582.pdb > /var/tmp/scwrl_1865605582.log Error: can't open any of /var/tmp/from_scwrl_1865605582.pdb or /var/tmp/from_scwrl_1865605582_b.pdb or /var/tmp/from_scwrl_1865605582_a.pdb Error: no new SCWRL conformation added # naming current conformation 3D-JIGSAW_TS4-scwrl # ReadConformPDB reading from PDB file servers/3D-JIGSAW_TS5.pdb.gz looking for model 1 # Found a chain break before 222 # copying to AlignedFragments data structure # naming current conformation 3D-JIGSAW_TS5 # request to SCWRL produces command: ulimit -t 207 ; scwrl -i /var/tmp/to_scwrl_351979063.pdb -s /var/tmp/to_scwrl_351979063.seq -o /var/tmp/from_scwrl_351979063.pdb > /var/tmp/scwrl_351979063.log Error: can't open any of /var/tmp/from_scwrl_351979063.pdb or /var/tmp/from_scwrl_351979063_b.pdb or /var/tmp/from_scwrl_351979063_a.pdb Error: no new SCWRL conformation added # naming current conformation 3D-JIGSAW_TS5-scwrl # ReadConformPDB reading from PDB file servers/3Dpro_TS1.pdb.gz looking for model 1 # Found a chain break before 213 # copying to AlignedFragments data structure # naming current conformation 3Dpro_TS1 # request to SCWRL produces command: ulimit -t 207 ; scwrl -i /var/tmp/to_scwrl_1911370097.pdb -s /var/tmp/to_scwrl_1911370097.seq -o /var/tmp/from_scwrl_1911370097.pdb > /var/tmp/scwrl_1911370097.log Error: can't open any of /var/tmp/from_scwrl_1911370097.pdb or /var/tmp/from_scwrl_1911370097_b.pdb or /var/tmp/from_scwrl_1911370097_a.pdb Error: no new SCWRL conformation added # naming current conformation 3Dpro_TS1-scwrl # ReadConformPDB reading from PDB file servers/3Dpro_TS2.pdb.gz looking for model 1 # Found a chain break before 221 # copying to AlignedFragments data structure # naming current conformation 3Dpro_TS2 # request to SCWRL produces command: ulimit -t 207 ; scwrl -i /var/tmp/to_scwrl_1968777572.pdb -s /var/tmp/to_scwrl_1968777572.seq -o /var/tmp/from_scwrl_1968777572.pdb > /var/tmp/scwrl_1968777572.log Error: can't open any of /var/tmp/from_scwrl_1968777572.pdb or /var/tmp/from_scwrl_1968777572_b.pdb or /var/tmp/from_scwrl_1968777572_a.pdb Error: no new SCWRL conformation added # naming current conformation 3Dpro_TS2-scwrl # ReadConformPDB reading from PDB file servers/3Dpro_TS3.pdb.gz looking for model 1 # Found a chain break before 225 # copying to AlignedFragments data structure # naming current conformation 3Dpro_TS3 # request to SCWRL produces command: ulimit -t 207 ; scwrl -i /var/tmp/to_scwrl_882319407.pdb -s /var/tmp/to_scwrl_882319407.seq -o /var/tmp/from_scwrl_882319407.pdb > /var/tmp/scwrl_882319407.log Error: can't open any of /var/tmp/from_scwrl_882319407.pdb or /var/tmp/from_scwrl_882319407_b.pdb or /var/tmp/from_scwrl_882319407_a.pdb Error: no new SCWRL conformation added # naming current conformation 3Dpro_TS3-scwrl # ReadConformPDB reading from PDB file servers/3Dpro_TS4.pdb.gz looking for model 1 # Found a chain break before 224 # copying to AlignedFragments data structure # naming current conformation 3Dpro_TS4 # request to SCWRL produces command: ulimit -t 207 ; scwrl -i /var/tmp/to_scwrl_489566134.pdb -s /var/tmp/to_scwrl_489566134.seq -o /var/tmp/from_scwrl_489566134.pdb > /var/tmp/scwrl_489566134.log Error: can't open any of /var/tmp/from_scwrl_489566134.pdb or /var/tmp/from_scwrl_489566134_b.pdb or /var/tmp/from_scwrl_489566134_a.pdb Error: no new SCWRL conformation added # naming current conformation 3Dpro_TS4-scwrl # ReadConformPDB reading from PDB file servers/3Dpro_TS5.pdb.gz looking for model 1 # Found a chain break before 222 # copying to AlignedFragments data structure # naming current conformation 3Dpro_TS5 # request to SCWRL produces command: ulimit -t 207 ; scwrl -i /var/tmp/to_scwrl_144946045.pdb -s /var/tmp/to_scwrl_144946045.seq -o /var/tmp/from_scwrl_144946045.pdb > /var/tmp/scwrl_144946045.log Error: can't open any of /var/tmp/from_scwrl_144946045.pdb or /var/tmp/from_scwrl_144946045_b.pdb or /var/tmp/from_scwrl_144946045_a.pdb Error: no new SCWRL conformation added # naming current conformation 3Dpro_TS5-scwrl # ReadConformPDB reading from PDB file servers/ABIpro_TS1.pdb.gz looking for model 1 # Found a chain break before 225 # copying to AlignedFragments data structure # naming current conformation ABIpro_TS1 # request to SCWRL produces command: ulimit -t 207 ; scwrl -i /var/tmp/to_scwrl_106446290.pdb -s /var/tmp/to_scwrl_106446290.seq -o /var/tmp/from_scwrl_106446290.pdb > /var/tmp/scwrl_106446290.log Error: can't open any of /var/tmp/from_scwrl_106446290.pdb or /var/tmp/from_scwrl_106446290_b.pdb or /var/tmp/from_scwrl_106446290_a.pdb Error: no new SCWRL conformation added # naming current conformation ABIpro_TS1-scwrl # ReadConformPDB reading from PDB file servers/ABIpro_TS2.pdb.gz looking for model 1 # Found a chain break before 224 # copying to AlignedFragments data structure # naming current conformation ABIpro_TS2 # request to SCWRL produces command: ulimit -t 207 ; scwrl -i /var/tmp/to_scwrl_189483510.pdb -s /var/tmp/to_scwrl_189483510.seq -o /var/tmp/from_scwrl_189483510.pdb > /var/tmp/scwrl_189483510.log Error: can't open any of /var/tmp/from_scwrl_189483510.pdb or /var/tmp/from_scwrl_189483510_b.pdb or /var/tmp/from_scwrl_189483510_a.pdb Error: no new SCWRL conformation added # naming current conformation ABIpro_TS2-scwrl # ReadConformPDB reading from PDB file servers/ABIpro_TS3.pdb.gz looking for model 1 # Found a chain break before 226 # copying to AlignedFragments data structure # naming current conformation ABIpro_TS3 # request to SCWRL produces command: ulimit -t 207 ; scwrl -i /var/tmp/to_scwrl_1129184649.pdb -s /var/tmp/to_scwrl_1129184649.seq -o /var/tmp/from_scwrl_1129184649.pdb > /var/tmp/scwrl_1129184649.log Error: can't open any of /var/tmp/from_scwrl_1129184649.pdb or /var/tmp/from_scwrl_1129184649_b.pdb or /var/tmp/from_scwrl_1129184649_a.pdb Error: no new SCWRL conformation added # naming current conformation ABIpro_TS3-scwrl # ReadConformPDB reading from PDB file servers/ABIpro_TS4.pdb.gz looking for model 1 # Found a chain break before 226 # copying to AlignedFragments data structure # naming current conformation ABIpro_TS4 # request to SCWRL produces command: ulimit -t 207 ; scwrl -i /var/tmp/to_scwrl_557530260.pdb -s /var/tmp/to_scwrl_557530260.seq -o /var/tmp/from_scwrl_557530260.pdb > /var/tmp/scwrl_557530260.log Error: can't open any of /var/tmp/from_scwrl_557530260.pdb or /var/tmp/from_scwrl_557530260_b.pdb or /var/tmp/from_scwrl_557530260_a.pdb Error: no new SCWRL conformation added # naming current conformation ABIpro_TS4-scwrl # ReadConformPDB reading from PDB file servers/ABIpro_TS5.pdb.gz looking for model 1 # Found a chain break before 223 # copying to AlignedFragments data structure # naming current conformation ABIpro_TS5 # request to SCWRL produces command: ulimit -t 207 ; scwrl -i /var/tmp/to_scwrl_692286557.pdb -s /var/tmp/to_scwrl_692286557.seq -o /var/tmp/from_scwrl_692286557.pdb > /var/tmp/scwrl_692286557.log Error: can't open any of /var/tmp/from_scwrl_692286557.pdb or /var/tmp/from_scwrl_692286557_b.pdb or /var/tmp/from_scwrl_692286557_a.pdb Error: no new SCWRL conformation added # naming current conformation ABIpro_TS5-scwrl # ReadConformPDB reading from PDB file servers/BayesHH_TS1.pdb.gz looking for model 1 # Found a chain break before 224 # copying to AlignedFragments data structure # naming current conformation BayesHH_TS1 # request to SCWRL produces command: ulimit -t 207 ; scwrl -i /var/tmp/to_scwrl_876781691.pdb -s /var/tmp/to_scwrl_876781691.seq -o /var/tmp/from_scwrl_876781691.pdb > /var/tmp/scwrl_876781691.log Error: can't open any of /var/tmp/from_scwrl_876781691.pdb or /var/tmp/from_scwrl_876781691_b.pdb or /var/tmp/from_scwrl_876781691_a.pdb Error: no new SCWRL conformation added # naming current conformation BayesHH_TS1-scwrl # ReadConformPDB reading from PDB file servers/Bilab-ENABLE_TS1.pdb.gz looking for model 1 # Found a chain break before 225 # copying to AlignedFragments data structure # naming current conformation Bilab-ENABLE_TS1 # request to SCWRL produces command: ulimit -t 207 ; scwrl -i /var/tmp/to_scwrl_934807235.pdb -s /var/tmp/to_scwrl_934807235.seq -o /var/tmp/from_scwrl_934807235.pdb > /var/tmp/scwrl_934807235.log Error: can't open any of /var/tmp/from_scwrl_934807235.pdb or /var/tmp/from_scwrl_934807235_b.pdb or /var/tmp/from_scwrl_934807235_a.pdb Error: no new SCWRL conformation added # naming current conformation Bilab-ENABLE_TS1-scwrl # ReadConformPDB reading from PDB file servers/Bilab-ENABLE_TS2.pdb.gz looking for model 1 # Found a chain break before 213 # copying to AlignedFragments data structure # naming current conformation Bilab-ENABLE_TS2 # request to SCWRL produces command: ulimit -t 207 ; scwrl -i /var/tmp/to_scwrl_261100740.pdb -s /var/tmp/to_scwrl_261100740.seq -o /var/tmp/from_scwrl_261100740.pdb > /var/tmp/scwrl_261100740.log Error: can't open any of /var/tmp/from_scwrl_261100740.pdb or /var/tmp/from_scwrl_261100740_b.pdb or /var/tmp/from_scwrl_261100740_a.pdb Error: no new SCWRL conformation added # naming current conformation Bilab-ENABLE_TS2-scwrl # ReadConformPDB reading from PDB file servers/Bilab-ENABLE_TS3.pdb.gz looking for model 1 # Found a chain break before 187 # copying to AlignedFragments data structure # naming current conformation Bilab-ENABLE_TS3 # request to SCWRL produces command: ulimit -t 207 ; scwrl -i /var/tmp/to_scwrl_172008659.pdb -s /var/tmp/to_scwrl_172008659.seq -o /var/tmp/from_scwrl_172008659.pdb > /var/tmp/scwrl_172008659.log Error: can't open any of /var/tmp/from_scwrl_172008659.pdb or /var/tmp/from_scwrl_172008659_b.pdb or /var/tmp/from_scwrl_172008659_a.pdb Error: no new SCWRL conformation added # naming current conformation Bilab-ENABLE_TS3-scwrl # ReadConformPDB reading from PDB file servers/CIRCLE_TS1.pdb.gz looking for model 1 # Found a chain break before 223 # copying to AlignedFragments data structure # naming current conformation CIRCLE_TS1 # request to SCWRL produces command: ulimit -t 207 ; scwrl -i /var/tmp/to_scwrl_1203653506.pdb -s /var/tmp/to_scwrl_1203653506.seq -o /var/tmp/from_scwrl_1203653506.pdb > /var/tmp/scwrl_1203653506.log Error: can't open any of /var/tmp/from_scwrl_1203653506.pdb or /var/tmp/from_scwrl_1203653506_b.pdb or /var/tmp/from_scwrl_1203653506_a.pdb Error: no new SCWRL conformation added # naming current conformation CIRCLE_TS1-scwrl # ReadConformPDB reading from PDB file servers/CIRCLE_TS2.pdb.gz looking for model 1 # Found a chain break before 224 # copying to AlignedFragments data structure # naming current conformation CIRCLE_TS2 # request to SCWRL produces command: ulimit -t 207 ; scwrl -i /var/tmp/to_scwrl_15440550.pdb -s /var/tmp/to_scwrl_15440550.seq -o /var/tmp/from_scwrl_15440550.pdb > /var/tmp/scwrl_15440550.log Error: can't open any of /var/tmp/from_scwrl_15440550.pdb or /var/tmp/from_scwrl_15440550_b.pdb or /var/tmp/from_scwrl_15440550_a.pdb Error: no new SCWRL conformation added # naming current conformation CIRCLE_TS2-scwrl # ReadConformPDB reading from PDB file servers/CIRCLE_TS3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0344 can't currently be optimized by undertaker # naming current conformation CIRCLE_TS3 # request to SCWRL produces command: ulimit -t 207 ; scwrl -i /var/tmp/to_scwrl_1729781313.pdb -s /var/tmp/to_scwrl_1729781313.seq -o /var/tmp/from_scwrl_1729781313.pdb > /var/tmp/scwrl_1729781313.log Error: can't open any of /var/tmp/from_scwrl_1729781313.pdb or /var/tmp/from_scwrl_1729781313_b.pdb or /var/tmp/from_scwrl_1729781313_a.pdb Error: no new SCWRL conformation added # naming current conformation CIRCLE_TS3-scwrl # ReadConformPDB reading from PDB file servers/CIRCLE_TS4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0344 can't currently be optimized by undertaker # naming current conformation CIRCLE_TS4 # request to SCWRL produces command: ulimit -t 207 ; scwrl -i /var/tmp/to_scwrl_2043752359.pdb -s /var/tmp/to_scwrl_2043752359.seq -o /var/tmp/from_scwrl_2043752359.pdb > /var/tmp/scwrl_2043752359.log Error: can't open any of /var/tmp/from_scwrl_2043752359.pdb or /var/tmp/from_scwrl_2043752359_b.pdb or /var/tmp/from_scwrl_2043752359_a.pdb Error: no new SCWRL conformation added # naming current conformation CIRCLE_TS4-scwrl # ReadConformPDB reading from PDB file servers/CIRCLE_TS5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0344 can't currently be optimized by undertaker # naming current conformation CIRCLE_TS5 # request to SCWRL produces command: ulimit -t 207 ; scwrl -i /var/tmp/to_scwrl_1673367210.pdb -s /var/tmp/to_scwrl_1673367210.seq -o /var/tmp/from_scwrl_1673367210.pdb > /var/tmp/scwrl_1673367210.log Error: can't open any of /var/tmp/from_scwrl_1673367210.pdb or /var/tmp/from_scwrl_1673367210_b.pdb or /var/tmp/from_scwrl_1673367210_a.pdb Error: no new SCWRL conformation added # naming current conformation CIRCLE_TS5-scwrl # ReadConformPDB reading from PDB file servers/CaspIta-FOX_TS1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0344 can't currently be optimized by undertaker # naming current conformation CaspIta-FOX_TS1 # request to SCWRL produces command: ulimit -t 207 ; scwrl -i /var/tmp/to_scwrl_872815351.pdb -s /var/tmp/to_scwrl_872815351.seq -o /var/tmp/from_scwrl_872815351.pdb > /var/tmp/scwrl_872815351.log Error: can't open any of /var/tmp/from_scwrl_872815351.pdb or /var/tmp/from_scwrl_872815351_b.pdb or /var/tmp/from_scwrl_872815351_a.pdb Error: no new SCWRL conformation added # naming current conformation CaspIta-FOX_TS1-scwrl # ReadConformPDB reading from PDB file servers/CaspIta-FOX_TS2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0344 can't currently be optimized by undertaker # naming current conformation CaspIta-FOX_TS2 # request to SCWRL produces command: ulimit -t 207 ; scwrl -i /var/tmp/to_scwrl_1528572111.pdb -s /var/tmp/to_scwrl_1528572111.seq -o /var/tmp/from_scwrl_1528572111.pdb > /var/tmp/scwrl_1528572111.log Error: can't open any of /var/tmp/from_scwrl_1528572111.pdb or /var/tmp/from_scwrl_1528572111_b.pdb or /var/tmp/from_scwrl_1528572111_a.pdb Error: no new SCWRL conformation added # naming current conformation CaspIta-FOX_TS2-scwrl # ReadConformPDB reading from PDB file servers/CaspIta-FOX_TS3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0344 can't currently be optimized by undertaker # naming current conformation CaspIta-FOX_TS3 # request to SCWRL produces command: ulimit -t 207 ; scwrl -i /var/tmp/to_scwrl_1322182724.pdb -s /var/tmp/to_scwrl_1322182724.seq -o /var/tmp/from_scwrl_1322182724.pdb > /var/tmp/scwrl_1322182724.log Error: can't open any of /var/tmp/from_scwrl_1322182724.pdb or /var/tmp/from_scwrl_1322182724_b.pdb or /var/tmp/from_scwrl_1322182724_a.pdb Error: no new SCWRL conformation added # naming current conformation CaspIta-FOX_TS3-scwrl # ReadConformPDB reading from PDB file servers/CaspIta-FOX_TS4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0344 can't currently be optimized by undertaker # naming current conformation CaspIta-FOX_TS4 # request to SCWRL produces command: ulimit -t 207 ; scwrl -i /var/tmp/to_scwrl_1744677610.pdb -s /var/tmp/to_scwrl_1744677610.seq -o /var/tmp/from_scwrl_1744677610.pdb > /var/tmp/scwrl_1744677610.log Error: can't open any of /var/tmp/from_scwrl_1744677610.pdb or /var/tmp/from_scwrl_1744677610_b.pdb or /var/tmp/from_scwrl_1744677610_a.pdb Error: no new SCWRL conformation added # naming current conformation CaspIta-FOX_TS4-scwrl # ReadConformPDB reading from PDB file servers/CaspIta-FOX_TS5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0344 can't currently be optimized by undertaker # naming current conformation CaspIta-FOX_TS5 # request to SCWRL produces command: ulimit -t 207 ; scwrl -i /var/tmp/to_scwrl_814128337.pdb -s /var/tmp/to_scwrl_814128337.seq -o /var/tmp/from_scwrl_814128337.pdb > /var/tmp/scwrl_814128337.log Error: can't open any of /var/tmp/from_scwrl_814128337.pdb or /var/tmp/from_scwrl_814128337_b.pdb or /var/tmp/from_scwrl_814128337_a.pdb Error: no new SCWRL conformation added # naming current conformation CaspIta-FOX_TS5-scwrl # ReadConformPDB reading from PDB file servers/Distill_TS1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0344 can't currently be optimized by undertaker # naming current conformation Distill_TS1 # request to SCWRL produces command: ulimit -t 207 ; scwrl -i /var/tmp/to_scwrl_1145060212.pdb -s /var/tmp/to_scwrl_1145060212.seq -o /var/tmp/from_scwrl_1145060212.pdb > /var/tmp/scwrl_1145060212.log Error: can't open any of /var/tmp/from_scwrl_1145060212.pdb or /var/tmp/from_scwrl_1145060212_b.pdb or /var/tmp/from_scwrl_1145060212_a.pdb Error: no new SCWRL conformation added # naming current conformation Distill_TS1-scwrl # ReadConformPDB reading from PDB file servers/Distill_TS2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0344 can't currently be optimized by undertaker # naming current conformation Distill_TS2 # request to SCWRL produces command: ulimit -t 207 ; scwrl -i /var/tmp/to_scwrl_479103203.pdb -s /var/tmp/to_scwrl_479103203.seq -o /var/tmp/from_scwrl_479103203.pdb > /var/tmp/scwrl_479103203.log Error: can't open any of /var/tmp/from_scwrl_479103203.pdb or /var/tmp/from_scwrl_479103203_b.pdb or /var/tmp/from_scwrl_479103203_a.pdb Error: no new SCWRL conformation added # naming current conformation Distill_TS2-scwrl # ReadConformPDB reading from PDB file servers/Distill_TS3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0344 can't currently be optimized by undertaker # naming current conformation Distill_TS3 # request to SCWRL produces command: ulimit -t 207 ; scwrl -i /var/tmp/to_scwrl_2018862871.pdb -s /var/tmp/to_scwrl_2018862871.seq -o /var/tmp/from_scwrl_2018862871.pdb > /var/tmp/scwrl_2018862871.log Error: can't open any of /var/tmp/from_scwrl_2018862871.pdb or /var/tmp/from_scwrl_2018862871_b.pdb or /var/tmp/from_scwrl_2018862871_a.pdb Error: no new SCWRL conformation added # naming current conformation Distill_TS3-scwrl # ReadConformPDB reading from PDB file servers/Distill_TS4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0344 can't currently be optimized by undertaker # naming current conformation Distill_TS4 # request to SCWRL produces command: ulimit -t 207 ; scwrl -i /var/tmp/to_scwrl_654848532.pdb -s /var/tmp/to_scwrl_654848532.seq -o /var/tmp/from_scwrl_654848532.pdb > /var/tmp/scwrl_654848532.log Error: can't open any of /var/tmp/from_scwrl_654848532.pdb or /var/tmp/from_scwrl_654848532_b.pdb or /var/tmp/from_scwrl_654848532_a.pdb Error: no new SCWRL conformation added # naming current conformation Distill_TS4-scwrl # ReadConformPDB reading from PDB file servers/Distill_TS5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0344 can't currently be optimized by undertaker # naming current conformation Distill_TS5 # request to SCWRL produces command: ulimit -t 207 ; scwrl -i /var/tmp/to_scwrl_1309918591.pdb -s /var/tmp/to_scwrl_1309918591.seq -o /var/tmp/from_scwrl_1309918591.pdb > /var/tmp/scwrl_1309918591.log Error: can't open any of /var/tmp/from_scwrl_1309918591.pdb or /var/tmp/from_scwrl_1309918591_b.pdb or /var/tmp/from_scwrl_1309918591_a.pdb Error: no new SCWRL conformation added # naming current conformation Distill_TS5-scwrl # ReadConformPDB reading from PDB file servers/FAMSD_TS1.pdb.gz looking for model 1 # Found a chain break before 226 # copying to AlignedFragments data structure # naming current conformation FAMSD_TS1 # request to SCWRL produces command: ulimit -t 207 ; scwrl -i /var/tmp/to_scwrl_1736984806.pdb -s /var/tmp/to_scwrl_1736984806.seq -o /var/tmp/from_scwrl_1736984806.pdb > /var/tmp/scwrl_1736984806.log Error: can't open any of /var/tmp/from_scwrl_1736984806.pdb or /var/tmp/from_scwrl_1736984806_b.pdb or /var/tmp/from_scwrl_1736984806_a.pdb Error: no new SCWRL conformation added # naming current conformation FAMSD_TS1-scwrl # ReadConformPDB reading from PDB file servers/FAMSD_TS2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0344 can't currently be optimized by undertaker # naming current conformation FAMSD_TS2 # request to SCWRL produces command: ulimit -t 207 ; scwrl -i /var/tmp/to_scwrl_1006827595.pdb -s /var/tmp/to_scwrl_1006827595.seq -o /var/tmp/from_scwrl_1006827595.pdb > /var/tmp/scwrl_1006827595.log Error: can't open any of /var/tmp/from_scwrl_1006827595.pdb or /var/tmp/from_scwrl_1006827595_b.pdb or /var/tmp/from_scwrl_1006827595_a.pdb Error: no new SCWRL conformation added # naming current conformation FAMSD_TS2-scwrl # ReadConformPDB reading from PDB file servers/FAMSD_TS3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0344 can't currently be optimized by undertaker # naming current conformation FAMSD_TS3 # request to SCWRL produces command: ulimit -t 207 ; scwrl -i /var/tmp/to_scwrl_1073805041.pdb -s /var/tmp/to_scwrl_1073805041.seq -o /var/tmp/from_scwrl_1073805041.pdb > /var/tmp/scwrl_1073805041.log Error: can't open any of /var/tmp/from_scwrl_1073805041.pdb or /var/tmp/from_scwrl_1073805041_b.pdb or /var/tmp/from_scwrl_1073805041_a.pdb Error: no new SCWRL conformation added # naming current conformation FAMSD_TS3-scwrl # ReadConformPDB reading from PDB file servers/FAMSD_TS4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0344 can't currently be optimized by undertaker # naming current conformation FAMSD_TS4 # request to SCWRL produces command: ulimit -t 207 ; scwrl -i /var/tmp/to_scwrl_1558278731.pdb -s /var/tmp/to_scwrl_1558278731.seq -o /var/tmp/from_scwrl_1558278731.pdb > /var/tmp/scwrl_1558278731.log Error: can't open any of /var/tmp/from_scwrl_1558278731.pdb or /var/tmp/from_scwrl_1558278731_b.pdb or /var/tmp/from_scwrl_1558278731_a.pdb Error: no new SCWRL conformation added # naming current conformation FAMSD_TS4-scwrl # ReadConformPDB reading from PDB file servers/FAMSD_TS5.pdb.gz looking for model 1 # Found a chain break before 224 # copying to AlignedFragments data structure # naming current conformation FAMSD_TS5 # request to SCWRL produces command: ulimit -t 207 ; scwrl -i /var/tmp/to_scwrl_1889147001.pdb -s /var/tmp/to_scwrl_1889147001.seq -o /var/tmp/from_scwrl_1889147001.pdb > /var/tmp/scwrl_1889147001.log Error: can't open any of /var/tmp/from_scwrl_1889147001.pdb or /var/tmp/from_scwrl_1889147001_b.pdb or /var/tmp/from_scwrl_1889147001_a.pdb Error: no new SCWRL conformation added # naming current conformation FAMSD_TS5-scwrl # ReadConformPDB reading from PDB file servers/FAMS_TS1.pdb.gz looking for model 1 # Found a chain break before 224 # copying to AlignedFragments data structure # naming current conformation FAMS_TS1 # request to SCWRL produces command: ulimit -t 207 ; scwrl -i /var/tmp/to_scwrl_1563371175.pdb -s /var/tmp/to_scwrl_1563371175.seq -o /var/tmp/from_scwrl_1563371175.pdb > /var/tmp/scwrl_1563371175.log Error: can't open any of /var/tmp/from_scwrl_1563371175.pdb or /var/tmp/from_scwrl_1563371175_b.pdb or /var/tmp/from_scwrl_1563371175_a.pdb Error: no new SCWRL conformation added # naming current conformation FAMS_TS1-scwrl # ReadConformPDB reading from PDB file servers/FAMS_TS2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0344 can't currently be optimized by undertaker # naming current conformation FAMS_TS2 # request to SCWRL produces command: ulimit -t 207 ; scwrl -i /var/tmp/to_scwrl_1703224776.pdb -s /var/tmp/to_scwrl_1703224776.seq -o /var/tmp/from_scwrl_1703224776.pdb > /var/tmp/scwrl_1703224776.log Error: can't open any of /var/tmp/from_scwrl_1703224776.pdb or /var/tmp/from_scwrl_1703224776_b.pdb or /var/tmp/from_scwrl_1703224776_a.pdb Error: no new SCWRL conformation added # naming current conformation FAMS_TS2-scwrl # ReadConformPDB reading from PDB file servers/FAMS_TS3.pdb.gz looking for model 1 # Found a chain break before 223 # copying to AlignedFragments data structure # naming current conformation FAMS_TS3 # request to SCWRL produces command: ulimit -t 207 ; scwrl -i /var/tmp/to_scwrl_1995593291.pdb -s /var/tmp/to_scwrl_1995593291.seq -o /var/tmp/from_scwrl_1995593291.pdb > /var/tmp/scwrl_1995593291.log Error: can't open any of /var/tmp/from_scwrl_1995593291.pdb or /var/tmp/from_scwrl_1995593291_b.pdb or /var/tmp/from_scwrl_1995593291_a.pdb Error: no new SCWRL conformation added # naming current conformation FAMS_TS3-scwrl # ReadConformPDB reading from PDB file servers/FAMS_TS4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0344 can't currently be optimized by undertaker # naming current conformation FAMS_TS4 # request to SCWRL produces command: ulimit -t 207 ; scwrl -i /var/tmp/to_scwrl_1752854685.pdb -s /var/tmp/to_scwrl_1752854685.seq -o /var/tmp/from_scwrl_1752854685.pdb > /var/tmp/scwrl_1752854685.log Error: can't open any of /var/tmp/from_scwrl_1752854685.pdb or /var/tmp/from_scwrl_1752854685_b.pdb or /var/tmp/from_scwrl_1752854685_a.pdb Error: no new SCWRL conformation added # naming current conformation FAMS_TS4-scwrl # ReadConformPDB reading from PDB file servers/FAMS_TS5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0344 can't currently be optimized by undertaker # naming current conformation FAMS_TS5 # request to SCWRL produces command: ulimit -t 207 ; scwrl -i /var/tmp/to_scwrl_684925780.pdb -s /var/tmp/to_scwrl_684925780.seq -o /var/tmp/from_scwrl_684925780.pdb > /var/tmp/scwrl_684925780.log Error: can't open any of /var/tmp/from_scwrl_684925780.pdb or /var/tmp/from_scwrl_684925780_b.pdb or /var/tmp/from_scwrl_684925780_a.pdb Error: no new SCWRL conformation added # naming current conformation FAMS_TS5-scwrl # ReadConformPDB reading from PDB file servers/FOLDpro_TS1.pdb.gz looking for model 1 # Found a chain break before 221 # copying to AlignedFragments data structure # naming current conformation FOLDpro_TS1 # request to SCWRL produces command: ulimit -t 207 ; scwrl -i /var/tmp/to_scwrl_405639905.pdb -s /var/tmp/to_scwrl_405639905.seq -o /var/tmp/from_scwrl_405639905.pdb > /var/tmp/scwrl_405639905.log Error: can't open any of /var/tmp/from_scwrl_405639905.pdb or /var/tmp/from_scwrl_405639905_b.pdb or /var/tmp/from_scwrl_405639905_a.pdb Error: no new SCWRL conformation added # naming current conformation FOLDpro_TS1-scwrl # ReadConformPDB reading from PDB file servers/FOLDpro_TS2.pdb.gz looking for model 1 # Found a chain break before 220 # copying to AlignedFragments data structure # naming current conformation FOLDpro_TS2 # request to SCWRL produces command: ulimit -t 207 ; scwrl -i /var/tmp/to_scwrl_297657595.pdb -s /var/tmp/to_scwrl_297657595.seq -o /var/tmp/from_scwrl_297657595.pdb > /var/tmp/scwrl_297657595.log Error: can't open any of /var/tmp/from_scwrl_297657595.pdb or /var/tmp/from_scwrl_297657595_b.pdb or /var/tmp/from_scwrl_297657595_a.pdb Error: no new SCWRL conformation added # naming current conformation FOLDpro_TS2-scwrl # ReadConformPDB reading from PDB file servers/FOLDpro_TS3.pdb.gz looking for model 1 # Found a chain break before 203 # copying to AlignedFragments data structure # naming current conformation FOLDpro_TS3 # request to SCWRL produces command: ulimit -t 207 ; scwrl -i /var/tmp/to_scwrl_1561707470.pdb -s /var/tmp/to_scwrl_1561707470.seq -o /var/tmp/from_scwrl_1561707470.pdb > /var/tmp/scwrl_1561707470.log Error: can't open any of /var/tmp/from_scwrl_1561707470.pdb or /var/tmp/from_scwrl_1561707470_b.pdb or /var/tmp/from_scwrl_1561707470_a.pdb Error: no new SCWRL conformation added # naming current conformation FOLDpro_TS3-scwrl # ReadConformPDB reading from PDB file servers/FOLDpro_TS4.pdb.gz looking for model 1 # Found a chain break before 225 # copying to AlignedFragments data structure # naming current conformation FOLDpro_TS4 # request to SCWRL produces command: ulimit -t 207 ; scwrl -i /var/tmp/to_scwrl_1340447139.pdb -s /var/tmp/to_scwrl_1340447139.seq -o /var/tmp/from_scwrl_1340447139.pdb > /var/tmp/scwrl_1340447139.log Error: can't open any of /var/tmp/from_scwrl_1340447139.pdb or /var/tmp/from_scwrl_1340447139_b.pdb or /var/tmp/from_scwrl_1340447139_a.pdb Error: no new SCWRL conformation added # naming current conformation FOLDpro_TS4-scwrl # ReadConformPDB reading from PDB file servers/FOLDpro_TS5.pdb.gz looking for model 1 # Found a chain break before 214 # copying to AlignedFragments data structure # naming current conformation FOLDpro_TS5 # request to SCWRL produces command: ulimit -t 207 ; scwrl -i /var/tmp/to_scwrl_558758335.pdb -s /var/tmp/to_scwrl_558758335.seq -o /var/tmp/from_scwrl_558758335.pdb > /var/tmp/scwrl_558758335.log Error: can't open any of /var/tmp/from_scwrl_558758335.pdb or /var/tmp/from_scwrl_558758335_b.pdb or /var/tmp/from_scwrl_558758335_a.pdb Error: no new SCWRL conformation added # naming current conformation FOLDpro_TS5-scwrl # ReadConformPDB reading from PDB file servers/FORTE1_AL1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0344 can't currently be optimized by undertaker # copying to AlignedFragments data structure # naming current conformation FORTE1_AL1 # request to SCWRL produces command: ulimit -t 207 ; scwrl -i /var/tmp/to_scwrl_1733716129.pdb -s /var/tmp/to_scwrl_1733716129.seq -o /var/tmp/from_scwrl_1733716129.pdb > /var/tmp/scwrl_1733716129.log Error: can't open any of /var/tmp/from_scwrl_1733716129.pdb or /var/tmp/from_scwrl_1733716129_b.pdb or /var/tmp/from_scwrl_1733716129_a.pdb Error: no new SCWRL conformation added # naming current conformation FORTE1_AL1-scwrl # ReadConformPDB reading from PDB file servers/FORTE1_AL2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0344 can't currently be optimized by undertaker # naming current conformation FORTE1_AL2 # request to SCWRL produces command: ulimit -t 207 ; scwrl -i /var/tmp/to_scwrl_396616999.pdb -s /var/tmp/to_scwrl_396616999.seq -o /var/tmp/from_scwrl_396616999.pdb > /var/tmp/scwrl_396616999.log Error: can't open any of /var/tmp/from_scwrl_396616999.pdb or /var/tmp/from_scwrl_396616999_b.pdb or /var/tmp/from_scwrl_396616999_a.pdb Error: no new SCWRL conformation added # naming current conformation FORTE1_AL2-scwrl # ReadConformPDB reading from PDB file servers/FORTE1_AL3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0344 can't currently be optimized by undertaker # naming current conformation FORTE1_AL3 # request to SCWRL produces command: ulimit -t 207 ; scwrl -i /var/tmp/to_scwrl_574198886.pdb -s /var/tmp/to_scwrl_574198886.seq -o /var/tmp/from_scwrl_574198886.pdb > /var/tmp/scwrl_574198886.log Error: can't open any of /var/tmp/from_scwrl_574198886.pdb or /var/tmp/from_scwrl_574198886_b.pdb or /var/tmp/from_scwrl_574198886_a.pdb Error: no new SCWRL conformation added # naming current conformation FORTE1_AL3-scwrl # ReadConformPDB reading from PDB file servers/FORTE1_AL4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0344 can't currently be optimized by undertaker # naming current conformation FORTE1_AL4 # request to SCWRL produces command: ulimit -t 207 ; scwrl -i /var/tmp/to_scwrl_1316013796.pdb -s /var/tmp/to_scwrl_1316013796.seq -o /var/tmp/from_scwrl_1316013796.pdb > /var/tmp/scwrl_1316013796.log Error: can't open any of /var/tmp/from_scwrl_1316013796.pdb or /var/tmp/from_scwrl_1316013796_b.pdb or /var/tmp/from_scwrl_1316013796_a.pdb Error: no new SCWRL conformation added # naming current conformation FORTE1_AL4-scwrl # ReadConformPDB reading from PDB file servers/FORTE1_AL5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0344 can't currently be optimized by undertaker # naming current conformation FORTE1_AL5 # request to SCWRL produces command: ulimit -t 207 ; scwrl -i /var/tmp/to_scwrl_292885711.pdb -s /var/tmp/to_scwrl_292885711.seq -o /var/tmp/from_scwrl_292885711.pdb > /var/tmp/scwrl_292885711.log Error: can't open any of /var/tmp/from_scwrl_292885711.pdb or /var/tmp/from_scwrl_292885711_b.pdb or /var/tmp/from_scwrl_292885711_a.pdb Error: no new SCWRL conformation added # naming current conformation FORTE1_AL5-scwrl # ReadConformPDB reading from PDB file servers/FORTE2_AL1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0344 can't currently be optimized by undertaker # copying to AlignedFragments data structure # naming current conformation FORTE2_AL1 # request to SCWRL produces command: ulimit -t 207 ; scwrl -i /var/tmp/to_scwrl_100082449.pdb -s /var/tmp/to_scwrl_100082449.seq -o /var/tmp/from_scwrl_100082449.pdb > /var/tmp/scwrl_100082449.log Error: can't open any of /var/tmp/from_scwrl_100082449.pdb or /var/tmp/from_scwrl_100082449_b.pdb or /var/tmp/from_scwrl_100082449_a.pdb Error: no new SCWRL conformation added # naming current conformation FORTE2_AL1-scwrl # ReadConformPDB reading from PDB file servers/FORTE2_AL2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0344 can't currently be optimized by undertaker # naming current conformation FORTE2_AL2 # request to SCWRL produces command: ulimit -t 207 ; scwrl -i /var/tmp/to_scwrl_41345500.pdb -s /var/tmp/to_scwrl_41345500.seq -o /var/tmp/from_scwrl_41345500.pdb > /var/tmp/scwrl_41345500.log Error: can't open any of /var/tmp/from_scwrl_41345500.pdb or /var/tmp/from_scwrl_41345500_b.pdb or /var/tmp/from_scwrl_41345500_a.pdb Error: no new SCWRL conformation added # naming current conformation FORTE2_AL2-scwrl # ReadConformPDB reading from PDB file servers/FORTE2_AL3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0344 can't currently be optimized by undertaker # naming current conformation FORTE2_AL3 # request to SCWRL produces command: ulimit -t 207 ; scwrl -i /var/tmp/to_scwrl_1821457823.pdb -s /var/tmp/to_scwrl_1821457823.seq -o /var/tmp/from_scwrl_1821457823.pdb > /var/tmp/scwrl_1821457823.log Error: can't open any of /var/tmp/from_scwrl_1821457823.pdb or /var/tmp/from_scwrl_1821457823_b.pdb or /var/tmp/from_scwrl_1821457823_a.pdb Error: no new SCWRL conformation added # naming current conformation FORTE2_AL3-scwrl # ReadConformPDB reading from PDB file servers/FORTE2_AL4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0344 can't currently be optimized by undertaker # naming current conformation FORTE2_AL4 # request to SCWRL produces command: ulimit -t 207 ; scwrl -i /var/tmp/to_scwrl_1422265174.pdb -s /var/tmp/to_scwrl_1422265174.seq -o /var/tmp/from_scwrl_1422265174.pdb > /var/tmp/scwrl_1422265174.log Error: can't open any of /var/tmp/from_scwrl_1422265174.pdb or /var/tmp/from_scwrl_1422265174_b.pdb or /var/tmp/from_scwrl_1422265174_a.pdb Error: no new SCWRL conformation added # naming current conformation FORTE2_AL4-scwrl # ReadConformPDB reading from PDB file servers/FORTE2_AL5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0344 can't currently be optimized by undertaker # naming current conformation FORTE2_AL5 # request to SCWRL produces command: ulimit -t 207 ; scwrl -i /var/tmp/to_scwrl_1786023111.pdb -s /var/tmp/to_scwrl_1786023111.seq -o /var/tmp/from_scwrl_1786023111.pdb > /var/tmp/scwrl_1786023111.log Error: can't open any of /var/tmp/from_scwrl_1786023111.pdb or /var/tmp/from_scwrl_1786023111_b.pdb or /var/tmp/from_scwrl_1786023111_a.pdb Error: no new SCWRL conformation added # naming current conformation FORTE2_AL5-scwrl # ReadConformPDB reading from PDB file servers/FPSOLVER-SERVER_TS1.pdb.gz looking for model 1 # Found a chain break before 200 # copying to AlignedFragments data structure # naming current conformation FPSOLVER-SERVER_TS1 # request to SCWRL produces command: ulimit -t 207 ; scwrl -i /var/tmp/to_scwrl_488102513.pdb -s /var/tmp/to_scwrl_488102513.seq -o /var/tmp/from_scwrl_488102513.pdb > /var/tmp/scwrl_488102513.log Error: can't open any of /var/tmp/from_scwrl_488102513.pdb or /var/tmp/from_scwrl_488102513_b.pdb or /var/tmp/from_scwrl_488102513_a.pdb Error: no new SCWRL conformation added # naming current conformation FPSOLVER-SERVER_TS1-scwrl # ReadConformPDB reading from PDB file servers/FPSOLVER-SERVER_TS2.pdb.gz looking for model 1 # Found a chain break before 214 # copying to AlignedFragments data structure # naming current conformation FPSOLVER-SERVER_TS2 # request to SCWRL produces command: ulimit -t 207 ; scwrl -i /var/tmp/to_scwrl_419841740.pdb -s /var/tmp/to_scwrl_419841740.seq -o /var/tmp/from_scwrl_419841740.pdb > /var/tmp/scwrl_419841740.log Error: can't open any of /var/tmp/from_scwrl_419841740.pdb or /var/tmp/from_scwrl_419841740_b.pdb or /var/tmp/from_scwrl_419841740_a.pdb Error: no new SCWRL conformation added # naming current conformation FPSOLVER-SERVER_TS2-scwrl # ReadConformPDB reading from PDB file servers/FPSOLVER-SERVER_TS3.pdb.gz looking for model 1 # Found a chain break before 228 # copying to AlignedFragments data structure # naming current conformation FPSOLVER-SERVER_TS3 # request to SCWRL produces command: ulimit -t 207 ; scwrl -i /var/tmp/to_scwrl_117642667.pdb -s /var/tmp/to_scwrl_117642667.seq -o /var/tmp/from_scwrl_117642667.pdb > /var/tmp/scwrl_117642667.log Error: can't open any of /var/tmp/from_scwrl_117642667.pdb or /var/tmp/from_scwrl_117642667_b.pdb or /var/tmp/from_scwrl_117642667_a.pdb Error: no new SCWRL conformation added # naming current conformation FPSOLVER-SERVER_TS3-scwrl # ReadConformPDB reading from PDB file servers/FPSOLVER-SERVER_TS4.pdb.gz looking for model 1 # Found a chain break before 184 # copying to AlignedFragments data structure # naming current conformation FPSOLVER-SERVER_TS4 # request to SCWRL produces command: ulimit -t 207 ; scwrl -i /var/tmp/to_scwrl_359481737.pdb -s /var/tmp/to_scwrl_359481737.seq -o /var/tmp/from_scwrl_359481737.pdb > /var/tmp/scwrl_359481737.log Error: can't open any of /var/tmp/from_scwrl_359481737.pdb or /var/tmp/from_scwrl_359481737_b.pdb or /var/tmp/from_scwrl_359481737_a.pdb Error: no new SCWRL conformation added # naming current conformation FPSOLVER-SERVER_TS4-scwrl # ReadConformPDB reading from PDB file servers/FPSOLVER-SERVER_TS5.pdb.gz looking for model 1 # Found a chain break before 228 # copying to AlignedFragments data structure # naming current conformation FPSOLVER-SERVER_TS5 # request to SCWRL produces command: ulimit -t 207 ; scwrl -i /var/tmp/to_scwrl_1074690271.pdb -s /var/tmp/to_scwrl_1074690271.seq -o /var/tmp/from_scwrl_1074690271.pdb > /var/tmp/scwrl_1074690271.log Error: can't open any of /var/tmp/from_scwrl_1074690271.pdb or /var/tmp/from_scwrl_1074690271_b.pdb or /var/tmp/from_scwrl_1074690271_a.pdb Error: no new SCWRL conformation added # naming current conformation FPSOLVER-SERVER_TS5-scwrl # ReadConformPDB reading from PDB file servers/FUGMOD_TS1.pdb.gz looking for model 1 # Found a chain break before 222 # copying to AlignedFragments data structure # naming current conformation FUGMOD_TS1 # request to SCWRL produces command: ulimit -t 207 ; scwrl -i /var/tmp/to_scwrl_1427561258.pdb -s /var/tmp/to_scwrl_1427561258.seq -o /var/tmp/from_scwrl_1427561258.pdb > /var/tmp/scwrl_1427561258.log Error: can't open any of /var/tmp/from_scwrl_1427561258.pdb or /var/tmp/from_scwrl_1427561258_b.pdb or /var/tmp/from_scwrl_1427561258_a.pdb Error: no new SCWRL conformation added # naming current conformation FUGMOD_TS1-scwrl # ReadConformPDB reading from PDB file servers/FUGMOD_TS2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0344 can't currently be optimized by undertaker # naming current conformation FUGMOD_TS2 # request to SCWRL produces command: ulimit -t 207 ; scwrl -i /var/tmp/to_scwrl_2096466543.pdb -s /var/tmp/to_scwrl_2096466543.seq -o /var/tmp/from_scwrl_2096466543.pdb > /var/tmp/scwrl_2096466543.log Error: can't open any of /var/tmp/from_scwrl_2096466543.pdb or /var/tmp/from_scwrl_2096466543_b.pdb or /var/tmp/from_scwrl_2096466543_a.pdb Error: no new SCWRL conformation added # naming current conformation FUGMOD_TS2-scwrl # ReadConformPDB reading from PDB file servers/FUGMOD_TS3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0344 can't currently be optimized by undertaker # naming current conformation FUGMOD_TS3 # request to SCWRL produces command: ulimit -t 207 ; scwrl -i /var/tmp/to_scwrl_2081517867.pdb -s /var/tmp/to_scwrl_2081517867.seq -o /var/tmp/from_scwrl_2081517867.pdb > /var/tmp/scwrl_2081517867.log Error: can't open any of /var/tmp/from_scwrl_2081517867.pdb or /var/tmp/from_scwrl_2081517867_b.pdb or /var/tmp/from_scwrl_2081517867_a.pdb Error: no new SCWRL conformation added # naming current conformation FUGMOD_TS3-scwrl # ReadConformPDB reading from PDB file servers/FUGMOD_TS4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0344 can't currently be optimized by undertaker # naming current conformation FUGMOD_TS4 # request to SCWRL produces command: ulimit -t 207 ; scwrl -i /var/tmp/to_scwrl_353882653.pdb -s /var/tmp/to_scwrl_353882653.seq -o /var/tmp/from_scwrl_353882653.pdb > /var/tmp/scwrl_353882653.log Error: can't open any of /var/tmp/from_scwrl_353882653.pdb or /var/tmp/from_scwrl_353882653_b.pdb or /var/tmp/from_scwrl_353882653_a.pdb Error: no new SCWRL conformation added # naming current conformation FUGMOD_TS4-scwrl # ReadConformPDB reading from PDB file servers/FUGMOD_TS5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0344 can't currently be optimized by undertaker # naming current conformation FUGMOD_TS5 # request to SCWRL produces command: ulimit -t 207 ; scwrl -i /var/tmp/to_scwrl_1507261627.pdb -s /var/tmp/to_scwrl_1507261627.seq -o /var/tmp/from_scwrl_1507261627.pdb > /var/tmp/scwrl_1507261627.log Error: can't open any of /var/tmp/from_scwrl_1507261627.pdb or /var/tmp/from_scwrl_1507261627_b.pdb or /var/tmp/from_scwrl_1507261627_a.pdb Error: no new SCWRL conformation added # naming current conformation FUGMOD_TS5-scwrl # ReadConformPDB reading from PDB file servers/FUGUE_AL1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0344 can't currently be optimized by undertaker # naming current conformation FUGUE_AL1 # request to SCWRL produces command: ulimit -t 207 ; scwrl -i /var/tmp/to_scwrl_1823181221.pdb -s /var/tmp/to_scwrl_1823181221.seq -o /var/tmp/from_scwrl_1823181221.pdb > /var/tmp/scwrl_1823181221.log Error: can't open any of /var/tmp/from_scwrl_1823181221.pdb or /var/tmp/from_scwrl_1823181221_b.pdb or /var/tmp/from_scwrl_1823181221_a.pdb Error: no new SCWRL conformation added # naming current conformation FUGUE_AL1-scwrl # ReadConformPDB reading from PDB file servers/FUGUE_AL2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0344 can't currently be optimized by undertaker # naming current conformation FUGUE_AL2 # request to SCWRL produces command: ulimit -t 207 ; scwrl -i /var/tmp/to_scwrl_1917253829.pdb -s /var/tmp/to_scwrl_1917253829.seq -o /var/tmp/from_scwrl_1917253829.pdb > /var/tmp/scwrl_1917253829.log Error: can't open any of /var/tmp/from_scwrl_1917253829.pdb or /var/tmp/from_scwrl_1917253829_b.pdb or /var/tmp/from_scwrl_1917253829_a.pdb Error: no new SCWRL conformation added # naming current conformation FUGUE_AL2-scwrl # ReadConformPDB reading from PDB file servers/FUGUE_AL3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0344 can't currently be optimized by undertaker # naming current conformation FUGUE_AL3 # request to SCWRL produces command: ulimit -t 207 ; scwrl -i /var/tmp/to_scwrl_1063002758.pdb -s /var/tmp/to_scwrl_1063002758.seq -o /var/tmp/from_scwrl_1063002758.pdb > /var/tmp/scwrl_1063002758.log Error: can't open any of /var/tmp/from_scwrl_1063002758.pdb or /var/tmp/from_scwrl_1063002758_b.pdb or /var/tmp/from_scwrl_1063002758_a.pdb Error: no new SCWRL conformation added # naming current conformation FUGUE_AL3-scwrl # ReadConformPDB reading from PDB file servers/FUGUE_AL4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0344 can't currently be optimized by undertaker # naming current conformation FUGUE_AL4 # request to SCWRL produces command: ulimit -t 207 ; scwrl -i /var/tmp/to_scwrl_1671290866.pdb -s /var/tmp/to_scwrl_1671290866.seq -o /var/tmp/from_scwrl_1671290866.pdb > /var/tmp/scwrl_1671290866.log Error: can't open any of /var/tmp/from_scwrl_1671290866.pdb or /var/tmp/from_scwrl_1671290866_b.pdb or /var/tmp/from_scwrl_1671290866_a.pdb Error: no new SCWRL conformation added # naming current conformation FUGUE_AL4-scwrl # ReadConformPDB reading from PDB file servers/FUGUE_AL5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0344 can't currently be optimized by undertaker # naming current conformation FUGUE_AL5 # request to SCWRL produces command: ulimit -t 207 ; scwrl -i /var/tmp/to_scwrl_1522624867.pdb -s /var/tmp/to_scwrl_1522624867.seq -o /var/tmp/from_scwrl_1522624867.pdb > /var/tmp/scwrl_1522624867.log Error: can't open any of /var/tmp/from_scwrl_1522624867.pdb or /var/tmp/from_scwrl_1522624867_b.pdb or /var/tmp/from_scwrl_1522624867_a.pdb Error: no new SCWRL conformation added # naming current conformation FUGUE_AL5-scwrl # ReadConformPDB reading from PDB file servers/FUNCTION_TS1.pdb.gz looking for model 1 # Found a chain break before 226 # copying to AlignedFragments data structure # naming current conformation FUNCTION_TS1 # request to SCWRL produces command: ulimit -t 207 ; scwrl -i /var/tmp/to_scwrl_1747928537.pdb -s /var/tmp/to_scwrl_1747928537.seq -o /var/tmp/from_scwrl_1747928537.pdb > /var/tmp/scwrl_1747928537.log Error: can't open any of /var/tmp/from_scwrl_1747928537.pdb or /var/tmp/from_scwrl_1747928537_b.pdb or /var/tmp/from_scwrl_1747928537_a.pdb Error: no new SCWRL conformation added # naming current conformation FUNCTION_TS1-scwrl # ReadConformPDB reading from PDB file servers/FUNCTION_TS2.pdb.gz looking for model 1 # Found a chain break before 226 # copying to AlignedFragments data structure # naming current conformation FUNCTION_TS2 # request to SCWRL produces command: ulimit -t 207 ; scwrl -i /var/tmp/to_scwrl_2076930771.pdb -s /var/tmp/to_scwrl_2076930771.seq -o /var/tmp/from_scwrl_2076930771.pdb > /var/tmp/scwrl_2076930771.log Error: can't open any of /var/tmp/from_scwrl_2076930771.pdb or /var/tmp/from_scwrl_2076930771_b.pdb or /var/tmp/from_scwrl_2076930771_a.pdb Error: no new SCWRL conformation added # naming current conformation FUNCTION_TS2-scwrl # ReadConformPDB reading from PDB file servers/FUNCTION_TS3.pdb.gz looking for model 1 # Found a chain break before 226 # copying to AlignedFragments data structure # naming current conformation FUNCTION_TS3 # request to SCWRL produces command: ulimit -t 207 ; scwrl -i /var/tmp/to_scwrl_1820282463.pdb -s /var/tmp/to_scwrl_1820282463.seq -o /var/tmp/from_scwrl_1820282463.pdb > /var/tmp/scwrl_1820282463.log Error: can't open any of /var/tmp/from_scwrl_1820282463.pdb or /var/tmp/from_scwrl_1820282463_b.pdb or /var/tmp/from_scwrl_1820282463_a.pdb Error: no new SCWRL conformation added # naming current conformation FUNCTION_TS3-scwrl # ReadConformPDB reading from PDB file servers/FUNCTION_TS4.pdb.gz looking for model 1 # Found a chain break before 228 # copying to AlignedFragments data structure # naming current conformation FUNCTION_TS4 # request to SCWRL produces command: ulimit -t 207 ; scwrl -i /var/tmp/to_scwrl_1162152360.pdb -s /var/tmp/to_scwrl_1162152360.seq -o /var/tmp/from_scwrl_1162152360.pdb > /var/tmp/scwrl_1162152360.log Error: can't open any of /var/tmp/from_scwrl_1162152360.pdb or /var/tmp/from_scwrl_1162152360_b.pdb or /var/tmp/from_scwrl_1162152360_a.pdb Error: no new SCWRL conformation added # naming current conformation FUNCTION_TS4-scwrl # ReadConformPDB reading from PDB file servers/FUNCTION_TS5.pdb.gz looking for model 1 # Found a chain break before 228 # copying to AlignedFragments data structure # naming current conformation FUNCTION_TS5 # request to SCWRL produces command: ulimit -t 207 ; scwrl -i /var/tmp/to_scwrl_1269894263.pdb -s /var/tmp/to_scwrl_1269894263.seq -o /var/tmp/from_scwrl_1269894263.pdb > /var/tmp/scwrl_1269894263.log Error: can't open any of /var/tmp/from_scwrl_1269894263.pdb or /var/tmp/from_scwrl_1269894263_b.pdb or /var/tmp/from_scwrl_1269894263_a.pdb Error: no new SCWRL conformation added # naming current conformation FUNCTION_TS5-scwrl # ReadConformPDB reading from PDB file servers/GeneSilicoMetaServer_TS1.pdb.gz looking for model 1 # Found a chain break before 215 # copying to AlignedFragments data structure # naming current conformation GeneSilicoMetaServer_TS1 # request to SCWRL produces command: ulimit -t 207 ; scwrl -i /var/tmp/to_scwrl_231557151.pdb -s /var/tmp/to_scwrl_231557151.seq -o /var/tmp/from_scwrl_231557151.pdb > /var/tmp/scwrl_231557151.log Error: can't open any of /var/tmp/from_scwrl_231557151.pdb or /var/tmp/from_scwrl_231557151_b.pdb or /var/tmp/from_scwrl_231557151_a.pdb Error: no new SCWRL conformation added # naming current conformation GeneSilicoMetaServer_TS1-scwrl # ReadConformPDB reading from PDB file servers/GeneSilicoMetaServer_TS2.pdb.gz looking for model 1 # Found a chain break before 211 # copying to AlignedFragments data structure # naming current conformation GeneSilicoMetaServer_TS2 # request to SCWRL produces command: ulimit -t 207 ; scwrl -i /var/tmp/to_scwrl_748384843.pdb -s /var/tmp/to_scwrl_748384843.seq -o /var/tmp/from_scwrl_748384843.pdb > /var/tmp/scwrl_748384843.log Error: can't open any of /var/tmp/from_scwrl_748384843.pdb or /var/tmp/from_scwrl_748384843_b.pdb or /var/tmp/from_scwrl_748384843_a.pdb Error: no new SCWRL conformation added # naming current conformation GeneSilicoMetaServer_TS2-scwrl # ReadConformPDB reading from PDB file servers/GeneSilicoMetaServer_TS3.pdb.gz looking for model 1 # Found a chain break before 216 # copying to AlignedFragments data structure # naming current conformation GeneSilicoMetaServer_TS3 # request to SCWRL produces command: ulimit -t 207 ; scwrl -i /var/tmp/to_scwrl_1666511262.pdb -s /var/tmp/to_scwrl_1666511262.seq -o /var/tmp/from_scwrl_1666511262.pdb > /var/tmp/scwrl_1666511262.log Error: can't open any of /var/tmp/from_scwrl_1666511262.pdb or /var/tmp/from_scwrl_1666511262_b.pdb or /var/tmp/from_scwrl_1666511262_a.pdb Error: no new SCWRL conformation added # naming current conformation GeneSilicoMetaServer_TS3-scwrl # ReadConformPDB reading from PDB file servers/GeneSilicoMetaServer_TS4.pdb.gz looking for model 1 # Found a chain break before 161 # copying to AlignedFragments data structure # naming current conformation GeneSilicoMetaServer_TS4 # request to SCWRL produces command: ulimit -t 207 ; scwrl -i /var/tmp/to_scwrl_805756037.pdb -s /var/tmp/to_scwrl_805756037.seq -o /var/tmp/from_scwrl_805756037.pdb > /var/tmp/scwrl_805756037.log Error: can't open any of /var/tmp/from_scwrl_805756037.pdb or /var/tmp/from_scwrl_805756037_b.pdb or /var/tmp/from_scwrl_805756037_a.pdb Error: no new SCWRL conformation added # naming current conformation GeneSilicoMetaServer_TS4-scwrl # ReadConformPDB reading from PDB file servers/GeneSilicoMetaServer_TS5.pdb.gz looking for model 1 # Found a chain break before 214 # copying to AlignedFragments data structure # naming current conformation GeneSilicoMetaServer_TS5 # request to SCWRL produces command: ulimit -t 207 ; scwrl -i /var/tmp/to_scwrl_2064398639.pdb -s /var/tmp/to_scwrl_2064398639.seq -o /var/tmp/from_scwrl_2064398639.pdb > /var/tmp/scwrl_2064398639.log Error: can't open any of /var/tmp/from_scwrl_2064398639.pdb or /var/tmp/from_scwrl_2064398639_b.pdb or /var/tmp/from_scwrl_2064398639_a.pdb Error: no new SCWRL conformation added # naming current conformation GeneSilicoMetaServer_TS5-scwrl # ReadConformPDB reading from PDB file servers/HHpred1_TS1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0344 can't currently be optimized by undertaker # naming current conformation HHpred1_TS1 # request to SCWRL produces command: ulimit -t 207 ; scwrl -i /var/tmp/to_scwrl_1959396973.pdb -s /var/tmp/to_scwrl_1959396973.seq -o /var/tmp/from_scwrl_1959396973.pdb > /var/tmp/scwrl_1959396973.log Error: can't open any of /var/tmp/from_scwrl_1959396973.pdb or /var/tmp/from_scwrl_1959396973_b.pdb or /var/tmp/from_scwrl_1959396973_a.pdb Error: no new SCWRL conformation added # naming current conformation HHpred1_TS1-scwrl # ReadConformPDB reading from PDB file servers/HHpred2_TS1.pdb.gz looking for model 1 # Found a chain break before 224 # copying to AlignedFragments data structure # naming current conformation HHpred2_TS1 # request to SCWRL produces command: ulimit -t 207 ; scwrl -i /var/tmp/to_scwrl_905838487.pdb -s /var/tmp/to_scwrl_905838487.seq -o /var/tmp/from_scwrl_905838487.pdb > /var/tmp/scwrl_905838487.log Error: can't open any of /var/tmp/from_scwrl_905838487.pdb or /var/tmp/from_scwrl_905838487_b.pdb or /var/tmp/from_scwrl_905838487_a.pdb Error: no new SCWRL conformation added # naming current conformation HHpred2_TS1-scwrl # ReadConformPDB reading from PDB file servers/HHpred3_TS1.pdb.gz looking for model 1 # Found a chain break before 224 # copying to AlignedFragments data structure # naming current conformation HHpred3_TS1 # request to SCWRL produces command: ulimit -t 207 ; scwrl -i /var/tmp/to_scwrl_2105744140.pdb -s /var/tmp/to_scwrl_2105744140.seq -o /var/tmp/from_scwrl_2105744140.pdb > /var/tmp/scwrl_2105744140.log Error: can't open any of /var/tmp/from_scwrl_2105744140.pdb or /var/tmp/from_scwrl_2105744140_b.pdb or /var/tmp/from_scwrl_2105744140_a.pdb Error: no new SCWRL conformation added # naming current conformation HHpred3_TS1-scwrl # ReadConformPDB reading from PDB file servers/Huber-Torda-Server_TS1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0344 can't currently be optimized by undertaker # naming current conformation Huber-Torda-Server_TS1 # request to SCWRL produces command: ulimit -t 207 ; scwrl -i /var/tmp/to_scwrl_1633371149.pdb -s /var/tmp/to_scwrl_1633371149.seq -o /var/tmp/from_scwrl_1633371149.pdb > /var/tmp/scwrl_1633371149.log Error: can't open any of /var/tmp/from_scwrl_1633371149.pdb or /var/tmp/from_scwrl_1633371149_b.pdb or /var/tmp/from_scwrl_1633371149_a.pdb Error: no new SCWRL conformation added # naming current conformation Huber-Torda-Server_TS1-scwrl # ReadConformPDB reading from PDB file servers/Huber-Torda-Server_TS2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0344 can't currently be optimized by undertaker # naming current conformation Huber-Torda-Server_TS2 # request to SCWRL produces command: ulimit -t 207 ; scwrl -i /var/tmp/to_scwrl_180620014.pdb -s /var/tmp/to_scwrl_180620014.seq -o /var/tmp/from_scwrl_180620014.pdb > /var/tmp/scwrl_180620014.log Error: can't open any of /var/tmp/from_scwrl_180620014.pdb or /var/tmp/from_scwrl_180620014_b.pdb or /var/tmp/from_scwrl_180620014_a.pdb Error: no new SCWRL conformation added # naming current conformation Huber-Torda-Server_TS2-scwrl # ReadConformPDB reading from PDB file servers/Huber-Torda-Server_TS3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0344 can't currently be optimized by undertaker # naming current conformation Huber-Torda-Server_TS3 # request to SCWRL produces command: ulimit -t 207 ; scwrl -i /var/tmp/to_scwrl_1744283604.pdb -s /var/tmp/to_scwrl_1744283604.seq -o /var/tmp/from_scwrl_1744283604.pdb > /var/tmp/scwrl_1744283604.log Error: can't open any of /var/tmp/from_scwrl_1744283604.pdb or /var/tmp/from_scwrl_1744283604_b.pdb or /var/tmp/from_scwrl_1744283604_a.pdb Error: no new SCWRL conformation added # naming current conformation Huber-Torda-Server_TS3-scwrl # ReadConformPDB reading from PDB file servers/Huber-Torda-Server_TS4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0344 can't currently be optimized by undertaker # naming current conformation Huber-Torda-Server_TS4 # request to SCWRL produces command: ulimit -t 207 ; scwrl -i /var/tmp/to_scwrl_2121473662.pdb -s /var/tmp/to_scwrl_2121473662.seq -o /var/tmp/from_scwrl_2121473662.pdb > /var/tmp/scwrl_2121473662.log Error: can't open any of /var/tmp/from_scwrl_2121473662.pdb or /var/tmp/from_scwrl_2121473662_b.pdb or /var/tmp/from_scwrl_2121473662_a.pdb Error: no new SCWRL conformation added # naming current conformation Huber-Torda-Server_TS4-scwrl # ReadConformPDB reading from PDB file servers/Huber-Torda-Server_TS5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0344 can't currently be optimized by undertaker # naming current conformation Huber-Torda-Server_TS5 # request to SCWRL produces command: ulimit -t 207 ; scwrl -i /var/tmp/to_scwrl_600461754.pdb -s /var/tmp/to_scwrl_600461754.seq -o /var/tmp/from_scwrl_600461754.pdb > /var/tmp/scwrl_600461754.log Error: can't open any of /var/tmp/from_scwrl_600461754.pdb or /var/tmp/from_scwrl_600461754_b.pdb or /var/tmp/from_scwrl_600461754_a.pdb Error: no new SCWRL conformation added # naming current conformation Huber-Torda-Server_TS5-scwrl # ReadConformPDB reading from PDB file servers/LOOPP_TS1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0344 can't currently be optimized by undertaker # naming current conformation LOOPP_TS1 # request to SCWRL produces command: ulimit -t 207 ; scwrl -i /var/tmp/to_scwrl_1861926271.pdb -s /var/tmp/to_scwrl_1861926271.seq -o /var/tmp/from_scwrl_1861926271.pdb > /var/tmp/scwrl_1861926271.log Error: can't open any of /var/tmp/from_scwrl_1861926271.pdb or /var/tmp/from_scwrl_1861926271_b.pdb or /var/tmp/from_scwrl_1861926271_a.pdb Error: no new SCWRL conformation added # naming current conformation LOOPP_TS1-scwrl # ReadConformPDB reading from PDB file servers/LOOPP_TS2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0344 can't currently be optimized by undertaker # naming current conformation LOOPP_TS2 # request to SCWRL produces command: ulimit -t 207 ; scwrl -i /var/tmp/to_scwrl_333471752.pdb -s /var/tmp/to_scwrl_333471752.seq -o /var/tmp/from_scwrl_333471752.pdb > /var/tmp/scwrl_333471752.log Error: can't open any of /var/tmp/from_scwrl_333471752.pdb or /var/tmp/from_scwrl_333471752_b.pdb or /var/tmp/from_scwrl_333471752_a.pdb Error: no new SCWRL conformation added # naming current conformation LOOPP_TS2-scwrl # ReadConformPDB reading from PDB file servers/LOOPP_TS3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0344 can't currently be optimized by undertaker # naming current conformation LOOPP_TS3 # request to SCWRL produces command: ulimit -t 207 ; scwrl -i /var/tmp/to_scwrl_1675152025.pdb -s /var/tmp/to_scwrl_1675152025.seq -o /var/tmp/from_scwrl_1675152025.pdb > /var/tmp/scwrl_1675152025.log Error: can't open any of /var/tmp/from_scwrl_1675152025.pdb or /var/tmp/from_scwrl_1675152025_b.pdb or /var/tmp/from_scwrl_1675152025_a.pdb Error: no new SCWRL conformation added # naming current conformation LOOPP_TS3-scwrl # ReadConformPDB reading from PDB file servers/LOOPP_TS4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0344 can't currently be optimized by undertaker # copying to AlignedFragments data structure # naming current conformation LOOPP_TS4 # request to SCWRL produces command: ulimit -t 207 ; scwrl -i /var/tmp/to_scwrl_1142003882.pdb -s /var/tmp/to_scwrl_1142003882.seq -o /var/tmp/from_scwrl_1142003882.pdb > /var/tmp/scwrl_1142003882.log Error: can't open any of /var/tmp/from_scwrl_1142003882.pdb or /var/tmp/from_scwrl_1142003882_b.pdb or /var/tmp/from_scwrl_1142003882_a.pdb Error: no new SCWRL conformation added # naming current conformation LOOPP_TS4-scwrl # ReadConformPDB reading from PDB file servers/LOOPP_TS5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0344 can't currently be optimized by undertaker # naming current conformation LOOPP_TS5 # request to SCWRL produces command: ulimit -t 207 ; scwrl -i /var/tmp/to_scwrl_282454648.pdb -s /var/tmp/to_scwrl_282454648.seq -o /var/tmp/from_scwrl_282454648.pdb > /var/tmp/scwrl_282454648.log Error: can't open any of /var/tmp/from_scwrl_282454648.pdb or /var/tmp/from_scwrl_282454648_b.pdb or /var/tmp/from_scwrl_282454648_a.pdb Error: no new SCWRL conformation added # naming current conformation LOOPP_TS5-scwrl # ReadConformPDB reading from PDB file servers/Ma-OPUS-server2_TS1.pdb.gz looking for model 1 # Found a chain break before 205 # copying to AlignedFragments data structure # naming current conformation Ma-OPUS-server2_TS1 # request to SCWRL produces command: ulimit -t 207 ; scwrl -i /var/tmp/to_scwrl_1609186245.pdb -s /var/tmp/to_scwrl_1609186245.seq -o /var/tmp/from_scwrl_1609186245.pdb > /var/tmp/scwrl_1609186245.log Error: can't open any of /var/tmp/from_scwrl_1609186245.pdb or /var/tmp/from_scwrl_1609186245_b.pdb or /var/tmp/from_scwrl_1609186245_a.pdb Error: no new SCWRL conformation added # naming current conformation Ma-OPUS-server2_TS1-scwrl # ReadConformPDB reading from PDB file servers/Ma-OPUS-server2_TS2.pdb.gz looking for model 1 # Found a chain break before 223 # copying to AlignedFragments data structure # naming current conformation Ma-OPUS-server2_TS2 # request to SCWRL produces command: ulimit -t 207 ; scwrl -i /var/tmp/to_scwrl_1495886535.pdb -s /var/tmp/to_scwrl_1495886535.seq -o /var/tmp/from_scwrl_1495886535.pdb > /var/tmp/scwrl_1495886535.log Error: can't open any of /var/tmp/from_scwrl_1495886535.pdb or /var/tmp/from_scwrl_1495886535_b.pdb or /var/tmp/from_scwrl_1495886535_a.pdb Error: no new SCWRL conformation added # naming current conformation Ma-OPUS-server2_TS2-scwrl # ReadConformPDB reading from PDB file servers/Ma-OPUS-server2_TS3.pdb.gz looking for model 1 # Found a chain break before 212 # copying to AlignedFragments data structure # naming current conformation Ma-OPUS-server2_TS3 # request to SCWRL produces command: ulimit -t 207 ; scwrl -i /var/tmp/to_scwrl_1789716276.pdb -s /var/tmp/to_scwrl_1789716276.seq -o /var/tmp/from_scwrl_1789716276.pdb > /var/tmp/scwrl_1789716276.log Error: can't open any of /var/tmp/from_scwrl_1789716276.pdb or /var/tmp/from_scwrl_1789716276_b.pdb or /var/tmp/from_scwrl_1789716276_a.pdb Error: no new SCWRL conformation added # naming current conformation Ma-OPUS-server2_TS3-scwrl # ReadConformPDB reading from PDB file servers/Ma-OPUS-server2_TS4.pdb.gz looking for model 1 # Found a chain break before 218 # copying to AlignedFragments data structure # naming current conformation Ma-OPUS-server2_TS4 # request to SCWRL produces command: ulimit -t 207 ; scwrl -i /var/tmp/to_scwrl_1284883820.pdb -s /var/tmp/to_scwrl_1284883820.seq -o /var/tmp/from_scwrl_1284883820.pdb > /var/tmp/scwrl_1284883820.log Error: can't open any of /var/tmp/from_scwrl_1284883820.pdb or /var/tmp/from_scwrl_1284883820_b.pdb or /var/tmp/from_scwrl_1284883820_a.pdb Error: no new SCWRL conformation added # naming current conformation Ma-OPUS-server2_TS4-scwrl # ReadConformPDB reading from PDB file servers/Ma-OPUS-server2_TS5.pdb.gz looking for model 1 # Found a chain break before 191 # copying to AlignedFragments data structure # naming current conformation Ma-OPUS-server2_TS5 # request to SCWRL produces command: ulimit -t 207 ; scwrl -i /var/tmp/to_scwrl_1265656717.pdb -s /var/tmp/to_scwrl_1265656717.seq -o /var/tmp/from_scwrl_1265656717.pdb > /var/tmp/scwrl_1265656717.log Error: can't open any of /var/tmp/from_scwrl_1265656717.pdb or /var/tmp/from_scwrl_1265656717_b.pdb or /var/tmp/from_scwrl_1265656717_a.pdb Error: no new SCWRL conformation added # naming current conformation Ma-OPUS-server2_TS5-scwrl # ReadConformPDB reading from PDB file servers/Ma-OPUS-server_TS1.pdb.gz looking for model 1 # Found a chain break before 190 # copying to AlignedFragments data structure # naming current conformation Ma-OPUS-server_TS1 # request to SCWRL produces command: ulimit -t 207 ; scwrl -i /var/tmp/to_scwrl_705235387.pdb -s /var/tmp/to_scwrl_705235387.seq -o /var/tmp/from_scwrl_705235387.pdb > /var/tmp/scwrl_705235387.log Error: can't open any of /var/tmp/from_scwrl_705235387.pdb or /var/tmp/from_scwrl_705235387_b.pdb or /var/tmp/from_scwrl_705235387_a.pdb Error: no new SCWRL conformation added # naming current conformation Ma-OPUS-server_TS1-scwrl # ReadConformPDB reading from PDB file servers/Ma-OPUS-server_TS2.pdb.gz looking for model 1 # Found a chain break before 218 # copying to AlignedFragments data structure # naming current conformation Ma-OPUS-server_TS2 # request to SCWRL produces command: ulimit -t 207 ; scwrl -i /var/tmp/to_scwrl_808691040.pdb -s /var/tmp/to_scwrl_808691040.seq -o /var/tmp/from_scwrl_808691040.pdb > /var/tmp/scwrl_808691040.log Error: can't open any of /var/tmp/from_scwrl_808691040.pdb or /var/tmp/from_scwrl_808691040_b.pdb or /var/tmp/from_scwrl_808691040_a.pdb Error: no new SCWRL conformation added # naming current conformation Ma-OPUS-server_TS2-scwrl # ReadConformPDB reading from PDB file servers/Ma-OPUS-server_TS3.pdb.gz looking for model 1 # Found a chain break before 215 # copying to AlignedFragments data structure # naming current conformation Ma-OPUS-server_TS3 # request to SCWRL produces command: ulimit -t 207 ; scwrl -i /var/tmp/to_scwrl_640797939.pdb -s /var/tmp/to_scwrl_640797939.seq -o /var/tmp/from_scwrl_640797939.pdb > /var/tmp/scwrl_640797939.log Error: can't open any of /var/tmp/from_scwrl_640797939.pdb or /var/tmp/from_scwrl_640797939_b.pdb or /var/tmp/from_scwrl_640797939_a.pdb Error: no new SCWRL conformation added # naming current conformation Ma-OPUS-server_TS3-scwrl # ReadConformPDB reading from PDB file servers/Ma-OPUS-server_TS4.pdb.gz looking for model 1 # Found a chain break before 225 # copying to AlignedFragments data structure # naming current conformation Ma-OPUS-server_TS4 # request to SCWRL produces command: ulimit -t 207 ; scwrl -i /var/tmp/to_scwrl_305680277.pdb -s /var/tmp/to_scwrl_305680277.seq -o /var/tmp/from_scwrl_305680277.pdb > /var/tmp/scwrl_305680277.log Error: can't open any of /var/tmp/from_scwrl_305680277.pdb or /var/tmp/from_scwrl_305680277_b.pdb or /var/tmp/from_scwrl_305680277_a.pdb Error: no new SCWRL conformation added # naming current conformation Ma-OPUS-server_TS4-scwrl # ReadConformPDB reading from PDB file servers/Ma-OPUS-server_TS5.pdb.gz looking for model 1 # Found a chain break before 218 # copying to AlignedFragments data structure # naming current conformation Ma-OPUS-server_TS5 # request to SCWRL produces command: ulimit -t 207 ; scwrl -i /var/tmp/to_scwrl_738138164.pdb -s /var/tmp/to_scwrl_738138164.seq -o /var/tmp/from_scwrl_738138164.pdb > /var/tmp/scwrl_738138164.log Error: can't open any of /var/tmp/from_scwrl_738138164.pdb or /var/tmp/from_scwrl_738138164_b.pdb or /var/tmp/from_scwrl_738138164_a.pdb Error: no new SCWRL conformation added # naming current conformation Ma-OPUS-server_TS5-scwrl # ReadConformPDB reading from PDB file servers/MetaTasser_TS1.pdb.gz looking for model 1 # Found a chain break before 224 # copying to AlignedFragments data structure # naming current conformation MetaTasser_TS1 # request to SCWRL produces command: ulimit -t 207 ; scwrl -i /var/tmp/to_scwrl_313596755.pdb -s /var/tmp/to_scwrl_313596755.seq -o /var/tmp/from_scwrl_313596755.pdb > /var/tmp/scwrl_313596755.log Error: can't open any of /var/tmp/from_scwrl_313596755.pdb or /var/tmp/from_scwrl_313596755_b.pdb or /var/tmp/from_scwrl_313596755_a.pdb Error: no new SCWRL conformation added # naming current conformation MetaTasser_TS1-scwrl # ReadConformPDB reading from PDB file servers/MetaTasser_TS2.pdb.gz looking for model 1 # Found a chain break before 228 # copying to AlignedFragments data structure # naming current conformation MetaTasser_TS2 # request to SCWRL produces command: ulimit -t 207 ; scwrl -i /var/tmp/to_scwrl_1467832637.pdb -s /var/tmp/to_scwrl_1467832637.seq -o /var/tmp/from_scwrl_1467832637.pdb > /var/tmp/scwrl_1467832637.log Error: can't open any of /var/tmp/from_scwrl_1467832637.pdb or /var/tmp/from_scwrl_1467832637_b.pdb or /var/tmp/from_scwrl_1467832637_a.pdb Error: no new SCWRL conformation added # naming current conformation MetaTasser_TS2-scwrl # ReadConformPDB reading from PDB file servers/MetaTasser_TS3.pdb.gz looking for model 1 # Found a chain break before 222 # copying to AlignedFragments data structure # naming current conformation MetaTasser_TS3 # request to SCWRL produces command: ulimit -t 207 ; scwrl -i /var/tmp/to_scwrl_2008032427.pdb -s /var/tmp/to_scwrl_2008032427.seq -o /var/tmp/from_scwrl_2008032427.pdb > /var/tmp/scwrl_2008032427.log Error: can't open any of /var/tmp/from_scwrl_2008032427.pdb or /var/tmp/from_scwrl_2008032427_b.pdb or /var/tmp/from_scwrl_2008032427_a.pdb Error: no new SCWRL conformation added # naming current conformation MetaTasser_TS3-scwrl # ReadConformPDB reading from PDB file servers/MetaTasser_TS4.pdb.gz looking for model 1 # Found a chain break before 224 # copying to AlignedFragments data structure # naming current conformation MetaTasser_TS4 # request to SCWRL produces command: ulimit -t 207 ; scwrl -i /var/tmp/to_scwrl_545153906.pdb -s /var/tmp/to_scwrl_545153906.seq -o /var/tmp/from_scwrl_545153906.pdb > /var/tmp/scwrl_545153906.log Error: can't open any of /var/tmp/from_scwrl_545153906.pdb or /var/tmp/from_scwrl_545153906_b.pdb or /var/tmp/from_scwrl_545153906_a.pdb Error: no new SCWRL conformation added # naming current conformation MetaTasser_TS4-scwrl # ReadConformPDB reading from PDB file servers/MetaTasser_TS5.pdb.gz looking for model 1 # Found a chain break before 222 # copying to AlignedFragments data structure # naming current conformation MetaTasser_TS5 # request to SCWRL produces command: ulimit -t 207 ; scwrl -i /var/tmp/to_scwrl_68733833.pdb -s /var/tmp/to_scwrl_68733833.seq -o /var/tmp/from_scwrl_68733833.pdb > /var/tmp/scwrl_68733833.log Error: can't open any of /var/tmp/from_scwrl_68733833.pdb or /var/tmp/from_scwrl_68733833_b.pdb or /var/tmp/from_scwrl_68733833_a.pdb Error: no new SCWRL conformation added # naming current conformation MetaTasser_TS5-scwrl # ReadConformPDB reading from PDB file servers/NN_PUT_lab_TS1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0344 can't currently be optimized by undertaker # naming current conformation NN_PUT_lab_TS1 # request to SCWRL produces command: ulimit -t 207 ; scwrl -i /var/tmp/to_scwrl_1527060042.pdb -s /var/tmp/to_scwrl_1527060042.seq -o /var/tmp/from_scwrl_1527060042.pdb > /var/tmp/scwrl_1527060042.log Error: can't open any of /var/tmp/from_scwrl_1527060042.pdb or /var/tmp/from_scwrl_1527060042_b.pdb or /var/tmp/from_scwrl_1527060042_a.pdb Error: no new SCWRL conformation added # naming current conformation NN_PUT_lab_TS1-scwrl # ReadConformPDB reading from PDB file servers/POMYSL_TS1.pdb.gz looking for model 1 # Found a chain break before 223 # copying to AlignedFragments data structure # naming current conformation POMYSL_TS1 # request to SCWRL produces command: ulimit -t 207 ; scwrl -i /var/tmp/to_scwrl_1350909943.pdb -s /var/tmp/to_scwrl_1350909943.seq -o /var/tmp/from_scwrl_1350909943.pdb > /var/tmp/scwrl_1350909943.log Error: can't open any of /var/tmp/from_scwrl_1350909943.pdb or /var/tmp/from_scwrl_1350909943_b.pdb or /var/tmp/from_scwrl_1350909943_a.pdb Error: no new SCWRL conformation added # naming current conformation POMYSL_TS1-scwrl # ReadConformPDB reading from PDB file servers/POMYSL_TS2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0344 can't currently be optimized by undertaker # naming current conformation POMYSL_TS2 # request to SCWRL produces command: ulimit -t 207 ; scwrl -i /var/tmp/to_scwrl_2133132473.pdb -s /var/tmp/to_scwrl_2133132473.seq -o /var/tmp/from_scwrl_2133132473.pdb > /var/tmp/scwrl_2133132473.log Error: can't open any of /var/tmp/from_scwrl_2133132473.pdb or /var/tmp/from_scwrl_2133132473_b.pdb or /var/tmp/from_scwrl_2133132473_a.pdb Error: no new SCWRL conformation added # naming current conformation POMYSL_TS2-scwrl # ReadConformPDB reading from PDB file servers/POMYSL_TS3.pdb.gz looking for model 1 # Found a chain break before 180 # copying to AlignedFragments data structure # naming current conformation POMYSL_TS3 # request to SCWRL produces command: ulimit -t 207 ; scwrl -i /var/tmp/to_scwrl_1338973368.pdb -s /var/tmp/to_scwrl_1338973368.seq -o /var/tmp/from_scwrl_1338973368.pdb > /var/tmp/scwrl_1338973368.log Error: can't open any of /var/tmp/from_scwrl_1338973368.pdb or /var/tmp/from_scwrl_1338973368_b.pdb or /var/tmp/from_scwrl_1338973368_a.pdb Error: no new SCWRL conformation added # naming current conformation POMYSL_TS3-scwrl # ReadConformPDB reading from PDB file servers/POMYSL_TS4.pdb.gz looking for model 1 # Found a chain break before 178 # copying to AlignedFragments data structure # naming current conformation POMYSL_TS4 # request to SCWRL produces command: ulimit -t 207 ; scwrl -i /var/tmp/to_scwrl_109264783.pdb -s /var/tmp/to_scwrl_109264783.seq -o /var/tmp/from_scwrl_109264783.pdb > /var/tmp/scwrl_109264783.log Error: can't open any of /var/tmp/from_scwrl_109264783.pdb or /var/tmp/from_scwrl_109264783_b.pdb or /var/tmp/from_scwrl_109264783_a.pdb Error: no new SCWRL conformation added # naming current conformation POMYSL_TS4-scwrl # ReadConformPDB reading from PDB file servers/POMYSL_TS5.pdb.gz looking for model 1 # Found a chain break before 219 # copying to AlignedFragments data structure # naming current conformation POMYSL_TS5 # request to SCWRL produces command: ulimit -t 207 ; scwrl -i /var/tmp/to_scwrl_2091392966.pdb -s /var/tmp/to_scwrl_2091392966.seq -o /var/tmp/from_scwrl_2091392966.pdb > /var/tmp/scwrl_2091392966.log Error: can't open any of /var/tmp/from_scwrl_2091392966.pdb or /var/tmp/from_scwrl_2091392966_b.pdb or /var/tmp/from_scwrl_2091392966_a.pdb Error: no new SCWRL conformation added # naming current conformation POMYSL_TS5-scwrl # ReadConformPDB reading from PDB file servers/PROTINFO-AB_TS1.pdb.gz looking for model 1 # naming current conformation PROTINFO-AB_TS1 # request to SCWRL produces command: ulimit -t 207 ; scwrl -i /var/tmp/to_scwrl_824860872.pdb -s /var/tmp/to_scwrl_824860872.seq -o /var/tmp/from_scwrl_824860872.pdb > /var/tmp/scwrl_824860872.log Error: can't open any of /var/tmp/from_scwrl_824860872.pdb or /var/tmp/from_scwrl_824860872_b.pdb or /var/tmp/from_scwrl_824860872_a.pdb Error: no new SCWRL conformation added # naming current conformation PROTINFO-AB_TS1-scwrl # ReadConformPDB reading from PDB file servers/PROTINFO-AB_TS2.pdb.gz looking for model 1 # naming current conformation PROTINFO-AB_TS2 # request to SCWRL produces command: ulimit -t 207 ; scwrl -i /var/tmp/to_scwrl_289884797.pdb -s /var/tmp/to_scwrl_289884797.seq -o /var/tmp/from_scwrl_289884797.pdb > /var/tmp/scwrl_289884797.log Error: can't open any of /var/tmp/from_scwrl_289884797.pdb or /var/tmp/from_scwrl_289884797_b.pdb or /var/tmp/from_scwrl_289884797_a.pdb Error: no new SCWRL conformation added # naming current conformation PROTINFO-AB_TS2-scwrl # ReadConformPDB reading from PDB file servers/PROTINFO-AB_TS3.pdb.gz looking for model 1 # naming current conformation PROTINFO-AB_TS3 # request to SCWRL produces command: ulimit -t 207 ; scwrl -i /var/tmp/to_scwrl_1688192923.pdb -s /var/tmp/to_scwrl_1688192923.seq -o /var/tmp/from_scwrl_1688192923.pdb > /var/tmp/scwrl_1688192923.log Error: can't open any of /var/tmp/from_scwrl_1688192923.pdb or /var/tmp/from_scwrl_1688192923_b.pdb or /var/tmp/from_scwrl_1688192923_a.pdb Error: no new SCWRL conformation added # naming current conformation PROTINFO-AB_TS3-scwrl # ReadConformPDB reading from PDB file servers/PROTINFO-AB_TS4.pdb.gz looking for model 1 # naming current conformation PROTINFO-AB_TS4 # request to SCWRL produces command: ulimit -t 207 ; scwrl -i /var/tmp/to_scwrl_798850887.pdb -s /var/tmp/to_scwrl_798850887.seq -o /var/tmp/from_scwrl_798850887.pdb > /var/tmp/scwrl_798850887.log Error: can't open any of /var/tmp/from_scwrl_798850887.pdb or /var/tmp/from_scwrl_798850887_b.pdb or /var/tmp/from_scwrl_798850887_a.pdb Error: no new SCWRL conformation added # naming current conformation PROTINFO-AB_TS4-scwrl # ReadConformPDB reading from PDB file servers/PROTINFO-AB_TS5.pdb.gz looking for model 1 # naming current conformation PROTINFO-AB_TS5 # request to SCWRL produces command: ulimit -t 207 ; scwrl -i /var/tmp/to_scwrl_890346551.pdb -s /var/tmp/to_scwrl_890346551.seq -o /var/tmp/from_scwrl_890346551.pdb > /var/tmp/scwrl_890346551.log Error: can't open any of /var/tmp/from_scwrl_890346551.pdb or /var/tmp/from_scwrl_890346551_b.pdb or /var/tmp/from_scwrl_890346551_a.pdb Error: no new SCWRL conformation added # naming current conformation PROTINFO-AB_TS5-scwrl # ReadConformPDB reading from PDB file servers/PROTINFO_TS1.pdb.gz looking for model 1 # Found a chain break before 219 # copying to AlignedFragments data structure # naming current conformation PROTINFO_TS1 # request to SCWRL produces command: ulimit -t 207 ; scwrl -i /var/tmp/to_scwrl_1402635547.pdb -s /var/tmp/to_scwrl_1402635547.seq -o /var/tmp/from_scwrl_1402635547.pdb > /var/tmp/scwrl_1402635547.log Error: can't open any of /var/tmp/from_scwrl_1402635547.pdb or /var/tmp/from_scwrl_1402635547_b.pdb or /var/tmp/from_scwrl_1402635547_a.pdb Error: no new SCWRL conformation added # naming current conformation PROTINFO_TS1-scwrl # ReadConformPDB reading from PDB file servers/PROTINFO_TS2.pdb.gz looking for model 1 # Found a chain break before 199 # copying to AlignedFragments data structure # naming current conformation PROTINFO_TS2 # request to SCWRL produces command: ulimit -t 207 ; scwrl -i /var/tmp/to_scwrl_1132322639.pdb -s /var/tmp/to_scwrl_1132322639.seq -o /var/tmp/from_scwrl_1132322639.pdb > /var/tmp/scwrl_1132322639.log Error: can't open any of /var/tmp/from_scwrl_1132322639.pdb or /var/tmp/from_scwrl_1132322639_b.pdb or /var/tmp/from_scwrl_1132322639_a.pdb Error: no new SCWRL conformation added # naming current conformation PROTINFO_TS2-scwrl # ReadConformPDB reading from PDB file servers/PROTINFO_TS3.pdb.gz looking for model 1 # Found a chain break before 224 # copying to AlignedFragments data structure # naming current conformation PROTINFO_TS3 # request to SCWRL produces command: ulimit -t 207 ; scwrl -i /var/tmp/to_scwrl_418014929.pdb -s /var/tmp/to_scwrl_418014929.seq -o /var/tmp/from_scwrl_418014929.pdb > /var/tmp/scwrl_418014929.log Error: can't open any of /var/tmp/from_scwrl_418014929.pdb or /var/tmp/from_scwrl_418014929_b.pdb or /var/tmp/from_scwrl_418014929_a.pdb Error: no new SCWRL conformation added # naming current conformation PROTINFO_TS3-scwrl # ReadConformPDB reading from PDB file servers/PROTINFO_TS4.pdb.gz looking for model 1 # Found a chain break before 130 # copying to AlignedFragments data structure # naming current conformation PROTINFO_TS4 # request to SCWRL produces command: ulimit -t 207 ; scwrl -i /var/tmp/to_scwrl_397155783.pdb -s /var/tmp/to_scwrl_397155783.seq -o /var/tmp/from_scwrl_397155783.pdb > /var/tmp/scwrl_397155783.log Error: can't open any of /var/tmp/from_scwrl_397155783.pdb or /var/tmp/from_scwrl_397155783_b.pdb or /var/tmp/from_scwrl_397155783_a.pdb Error: no new SCWRL conformation added # naming current conformation PROTINFO_TS4-scwrl # ReadConformPDB reading from PDB file servers/PROTINFO_TS5.pdb.gz looking for model 1 # Found a chain break before 170 # copying to AlignedFragments data structure # naming current conformation PROTINFO_TS5 # request to SCWRL produces command: ulimit -t 207 ; scwrl -i /var/tmp/to_scwrl_1414777287.pdb -s /var/tmp/to_scwrl_1414777287.seq -o /var/tmp/from_scwrl_1414777287.pdb > /var/tmp/scwrl_1414777287.log Error: can't open any of /var/tmp/from_scwrl_1414777287.pdb or /var/tmp/from_scwrl_1414777287_b.pdb or /var/tmp/from_scwrl_1414777287_a.pdb Error: no new SCWRL conformation added # naming current conformation PROTINFO_TS5-scwrl # ReadConformPDB reading from PDB file servers/Pcons6_TS1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0344 can't currently be optimized by undertaker # copying to AlignedFragments data structure # naming current conformation Pcons6_TS1 # request to SCWRL produces command: ulimit -t 207 ; scwrl -i /var/tmp/to_scwrl_2027201175.pdb -s /var/tmp/to_scwrl_2027201175.seq -o /var/tmp/from_scwrl_2027201175.pdb > /var/tmp/scwrl_2027201175.log Error: can't open any of /var/tmp/from_scwrl_2027201175.pdb or /var/tmp/from_scwrl_2027201175_b.pdb or /var/tmp/from_scwrl_2027201175_a.pdb Error: no new SCWRL conformation added # naming current conformation Pcons6_TS1-scwrl # ReadConformPDB reading from PDB file servers/Pcons6_TS2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0344 can't currently be optimized by undertaker # naming current conformation Pcons6_TS2 # request to SCWRL produces command: ulimit -t 207 ; scwrl -i /var/tmp/to_scwrl_1893042318.pdb -s /var/tmp/to_scwrl_1893042318.seq -o /var/tmp/from_scwrl_1893042318.pdb > /var/tmp/scwrl_1893042318.log Error: can't open any of /var/tmp/from_scwrl_1893042318.pdb or /var/tmp/from_scwrl_1893042318_b.pdb or /var/tmp/from_scwrl_1893042318_a.pdb Error: no new SCWRL conformation added # naming current conformation Pcons6_TS2-scwrl # ReadConformPDB reading from PDB file servers/Pcons6_TS3.pdb.gz looking for model 1 # Found a chain break before 147 # copying to AlignedFragments data structure # naming current conformation Pcons6_TS3 # request to SCWRL produces command: ulimit -t 207 ; scwrl -i /var/tmp/to_scwrl_1057009917.pdb -s /var/tmp/to_scwrl_1057009917.seq -o /var/tmp/from_scwrl_1057009917.pdb > /var/tmp/scwrl_1057009917.log Error: can't open any of /var/tmp/from_scwrl_1057009917.pdb or /var/tmp/from_scwrl_1057009917_b.pdb or /var/tmp/from_scwrl_1057009917_a.pdb Error: no new SCWRL conformation added # naming current conformation Pcons6_TS3-scwrl # ReadConformPDB reading from PDB file servers/Pcons6_TS4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0344 can't currently be optimized by undertaker # naming current conformation Pcons6_TS4 # request to SCWRL produces command: ulimit -t 207 ; scwrl -i /var/tmp/to_scwrl_1164601348.pdb -s /var/tmp/to_scwrl_1164601348.seq -o /var/tmp/from_scwrl_1164601348.pdb > /var/tmp/scwrl_1164601348.log Error: can't open any of /var/tmp/from_scwrl_1164601348.pdb or /var/tmp/from_scwrl_1164601348_b.pdb or /var/tmp/from_scwrl_1164601348_a.pdb Error: no new SCWRL conformation added # naming current conformation Pcons6_TS4-scwrl # ReadConformPDB reading from PDB file servers/Pcons6_TS5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0344 can't currently be optimized by undertaker # naming current conformation Pcons6_TS5 # request to SCWRL produces command: ulimit -t 207 ; scwrl -i /var/tmp/to_scwrl_1011215390.pdb -s /var/tmp/to_scwrl_1011215390.seq -o /var/tmp/from_scwrl_1011215390.pdb > /var/tmp/scwrl_1011215390.log Error: can't open any of /var/tmp/from_scwrl_1011215390.pdb or /var/tmp/from_scwrl_1011215390_b.pdb or /var/tmp/from_scwrl_1011215390_a.pdb Error: no new SCWRL conformation added # naming current conformation Pcons6_TS5-scwrl # ReadConformPDB reading from PDB file servers/Phyre-1_TS1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0344 can't currently be optimized by undertaker # naming current conformation Phyre-1_TS1 # request to SCWRL produces command: ulimit -t 207 ; scwrl -i /var/tmp/to_scwrl_1762245303.pdb -s /var/tmp/to_scwrl_1762245303.seq -o /var/tmp/from_scwrl_1762245303.pdb > /var/tmp/scwrl_1762245303.log Error: can't open any of /var/tmp/from_scwrl_1762245303.pdb or /var/tmp/from_scwrl_1762245303_b.pdb or /var/tmp/from_scwrl_1762245303_a.pdb Error: no new SCWRL conformation added # naming current conformation Phyre-1_TS1-scwrl # ReadConformPDB reading from PDB file servers/Phyre-2_TS1.pdb.gz looking for model 1 # Found a chain break before 223 # copying to AlignedFragments data structure # naming current conformation Phyre-2_TS1 # request to SCWRL produces command: ulimit -t 207 ; scwrl -i /var/tmp/to_scwrl_1973292388.pdb -s /var/tmp/to_scwrl_1973292388.seq -o /var/tmp/from_scwrl_1973292388.pdb > /var/tmp/scwrl_1973292388.log Error: can't open any of /var/tmp/from_scwrl_1973292388.pdb or /var/tmp/from_scwrl_1973292388_b.pdb or /var/tmp/from_scwrl_1973292388_a.pdb Error: no new SCWRL conformation added # naming current conformation Phyre-2_TS1-scwrl # ReadConformPDB reading from PDB file servers/Phyre-2_TS2.pdb.gz looking for model 1 # Found a chain break before 219 # copying to AlignedFragments data structure # naming current conformation Phyre-2_TS2 # request to SCWRL produces command: ulimit -t 207 ; scwrl -i /var/tmp/to_scwrl_1652013328.pdb -s /var/tmp/to_scwrl_1652013328.seq -o /var/tmp/from_scwrl_1652013328.pdb > /var/tmp/scwrl_1652013328.log Error: can't open any of /var/tmp/from_scwrl_1652013328.pdb or /var/tmp/from_scwrl_1652013328_b.pdb or /var/tmp/from_scwrl_1652013328_a.pdb Error: no new SCWRL conformation added # naming current conformation Phyre-2_TS2-scwrl # ReadConformPDB reading from PDB file servers/Phyre-2_TS3.pdb.gz looking for model 1 # Found a chain break before 221 # copying to AlignedFragments data structure # naming current conformation Phyre-2_TS3 # request to SCWRL produces command: ulimit -t 207 ; scwrl -i /var/tmp/to_scwrl_2067925580.pdb -s /var/tmp/to_scwrl_2067925580.seq -o /var/tmp/from_scwrl_2067925580.pdb > /var/tmp/scwrl_2067925580.log Error: can't open any of /var/tmp/from_scwrl_2067925580.pdb or /var/tmp/from_scwrl_2067925580_b.pdb or /var/tmp/from_scwrl_2067925580_a.pdb Error: no new SCWRL conformation added # naming current conformation Phyre-2_TS3-scwrl # ReadConformPDB reading from PDB file servers/Phyre-2_TS4.pdb.gz looking for model 1 # Found a chain break before 225 # copying to AlignedFragments data structure # naming current conformation Phyre-2_TS4 # request to SCWRL produces command: ulimit -t 207 ; scwrl -i /var/tmp/to_scwrl_563946905.pdb -s /var/tmp/to_scwrl_563946905.seq -o /var/tmp/from_scwrl_563946905.pdb > /var/tmp/scwrl_563946905.log Error: can't open any of /var/tmp/from_scwrl_563946905.pdb or /var/tmp/from_scwrl_563946905_b.pdb or /var/tmp/from_scwrl_563946905_a.pdb Error: no new SCWRL conformation added # naming current conformation Phyre-2_TS4-scwrl # ReadConformPDB reading from PDB file servers/Phyre-2_TS5.pdb.gz looking for model 1 # Found a chain break before 223 # copying to AlignedFragments data structure # naming current conformation Phyre-2_TS5 # request to SCWRL produces command: ulimit -t 207 ; scwrl -i /var/tmp/to_scwrl_1965610083.pdb -s /var/tmp/to_scwrl_1965610083.seq -o /var/tmp/from_scwrl_1965610083.pdb > /var/tmp/scwrl_1965610083.log Error: can't open any of /var/tmp/from_scwrl_1965610083.pdb or /var/tmp/from_scwrl_1965610083_b.pdb or /var/tmp/from_scwrl_1965610083_a.pdb Error: no new SCWRL conformation added # naming current conformation Phyre-2_TS5-scwrl # ReadConformPDB reading from PDB file servers/Pmodeller6_TS1.pdb.gz looking for model 1 # Found a chain break before 223 # copying to AlignedFragments data structure # naming current conformation Pmodeller6_TS1 # request to SCWRL produces command: ulimit -t 207 ; scwrl -i /var/tmp/to_scwrl_1388274570.pdb -s /var/tmp/to_scwrl_1388274570.seq -o /var/tmp/from_scwrl_1388274570.pdb > /var/tmp/scwrl_1388274570.log Error: can't open any of /var/tmp/from_scwrl_1388274570.pdb or /var/tmp/from_scwrl_1388274570_b.pdb or /var/tmp/from_scwrl_1388274570_a.pdb Error: no new SCWRL conformation added # naming current conformation Pmodeller6_TS1-scwrl # ReadConformPDB reading from PDB file servers/Pmodeller6_TS2.pdb.gz looking for model 1 # Found a chain break before 214 # copying to AlignedFragments data structure # naming current conformation Pmodeller6_TS2 # request to SCWRL produces command: ulimit -t 207 ; scwrl -i /var/tmp/to_scwrl_424495685.pdb -s /var/tmp/to_scwrl_424495685.seq -o /var/tmp/from_scwrl_424495685.pdb > /var/tmp/scwrl_424495685.log Error: can't open any of /var/tmp/from_scwrl_424495685.pdb or /var/tmp/from_scwrl_424495685_b.pdb or /var/tmp/from_scwrl_424495685_a.pdb Error: no new SCWRL conformation added # naming current conformation Pmodeller6_TS2-scwrl # ReadConformPDB reading from PDB file servers/Pmodeller6_TS3.pdb.gz looking for model 1 # Found a chain break before 215 # copying to AlignedFragments data structure # naming current conformation Pmodeller6_TS3 # request to SCWRL produces command: ulimit -t 207 ; scwrl -i /var/tmp/to_scwrl_363280342.pdb -s /var/tmp/to_scwrl_363280342.seq -o /var/tmp/from_scwrl_363280342.pdb > /var/tmp/scwrl_363280342.log Error: can't open any of /var/tmp/from_scwrl_363280342.pdb or /var/tmp/from_scwrl_363280342_b.pdb or /var/tmp/from_scwrl_363280342_a.pdb Error: no new SCWRL conformation added # naming current conformation Pmodeller6_TS3-scwrl # ReadConformPDB reading from PDB file servers/Pmodeller6_TS4.pdb.gz looking for model 1 # Found a chain break before 214 # copying to AlignedFragments data structure # naming current conformation Pmodeller6_TS4 # request to SCWRL produces command: ulimit -t 207 ; scwrl -i /var/tmp/to_scwrl_1457008404.pdb -s /var/tmp/to_scwrl_1457008404.seq -o /var/tmp/from_scwrl_1457008404.pdb > /var/tmp/scwrl_1457008404.log Error: can't open any of /var/tmp/from_scwrl_1457008404.pdb or /var/tmp/from_scwrl_1457008404_b.pdb or /var/tmp/from_scwrl_1457008404_a.pdb Error: no new SCWRL conformation added # naming current conformation Pmodeller6_TS4-scwrl # ReadConformPDB reading from PDB file servers/Pmodeller6_TS5.pdb.gz looking for model 1 # Found a chain break before 147 # copying to AlignedFragments data structure # naming current conformation Pmodeller6_TS5 # request to SCWRL produces command: ulimit -t 207 ; scwrl -i /var/tmp/to_scwrl_1951555727.pdb -s /var/tmp/to_scwrl_1951555727.seq -o /var/tmp/from_scwrl_1951555727.pdb > /var/tmp/scwrl_1951555727.log Error: can't open any of /var/tmp/from_scwrl_1951555727.pdb or /var/tmp/from_scwrl_1951555727_b.pdb or /var/tmp/from_scwrl_1951555727_a.pdb Error: no new SCWRL conformation added # naming current conformation Pmodeller6_TS5-scwrl # ReadConformPDB reading from PDB file servers/RAPTOR-ACE_TS1.pdb.gz looking for model 1 # Found a chain break before 223 # copying to AlignedFragments data structure # naming current conformation RAPTOR-ACE_TS1 # request to SCWRL produces command: ulimit -t 207 ; scwrl -i /var/tmp/to_scwrl_1714190285.pdb -s /var/tmp/to_scwrl_1714190285.seq -o /var/tmp/from_scwrl_1714190285.pdb > /var/tmp/scwrl_1714190285.log Error: can't open any of /var/tmp/from_scwrl_1714190285.pdb or /var/tmp/from_scwrl_1714190285_b.pdb or /var/tmp/from_scwrl_1714190285_a.pdb Error: no new SCWRL conformation added # naming current conformation RAPTOR-ACE_TS1-scwrl # ReadConformPDB reading from PDB file servers/RAPTOR-ACE_TS2.pdb.gz looking for model 1 # Found a chain break before 204 # copying to AlignedFragments data structure # naming current conformation RAPTOR-ACE_TS2 # request to SCWRL produces command: ulimit -t 207 ; scwrl -i /var/tmp/to_scwrl_1442657230.pdb -s /var/tmp/to_scwrl_1442657230.seq -o /var/tmp/from_scwrl_1442657230.pdb > /var/tmp/scwrl_1442657230.log Error: can't open any of /var/tmp/from_scwrl_1442657230.pdb or /var/tmp/from_scwrl_1442657230_b.pdb or /var/tmp/from_scwrl_1442657230_a.pdb Error: no new SCWRL conformation added # naming current conformation RAPTOR-ACE_TS2-scwrl # ReadConformPDB reading from PDB file servers/RAPTOR-ACE_TS3.pdb.gz looking for model 1 # Found a chain break before 195 # copying to AlignedFragments data structure # naming current conformation RAPTOR-ACE_TS3 # request to SCWRL produces command: ulimit -t 207 ; scwrl -i /var/tmp/to_scwrl_1143045448.pdb -s /var/tmp/to_scwrl_1143045448.seq -o /var/tmp/from_scwrl_1143045448.pdb > /var/tmp/scwrl_1143045448.log Error: can't open any of /var/tmp/from_scwrl_1143045448.pdb or /var/tmp/from_scwrl_1143045448_b.pdb or /var/tmp/from_scwrl_1143045448_a.pdb Error: no new SCWRL conformation added # naming current conformation RAPTOR-ACE_TS3-scwrl # ReadConformPDB reading from PDB file servers/RAPTOR-ACE_TS4.pdb.gz looking for model 1 # Found a chain break before 201 # copying to AlignedFragments data structure # naming current conformation RAPTOR-ACE_TS4 # request to SCWRL produces command: ulimit -t 207 ; scwrl -i /var/tmp/to_scwrl_1823455068.pdb -s /var/tmp/to_scwrl_1823455068.seq -o /var/tmp/from_scwrl_1823455068.pdb > /var/tmp/scwrl_1823455068.log Error: can't open any of /var/tmp/from_scwrl_1823455068.pdb or /var/tmp/from_scwrl_1823455068_b.pdb or /var/tmp/from_scwrl_1823455068_a.pdb Error: no new SCWRL conformation added # naming current conformation RAPTOR-ACE_TS4-scwrl # ReadConformPDB reading from PDB file servers/RAPTOR-ACE_TS5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0344 can't currently be optimized by undertaker # copying to AlignedFragments data structure # naming current conformation RAPTOR-ACE_TS5 # request to SCWRL produces command: ulimit -t 207 ; scwrl -i /var/tmp/to_scwrl_1386566549.pdb -s /var/tmp/to_scwrl_1386566549.seq -o /var/tmp/from_scwrl_1386566549.pdb > /var/tmp/scwrl_1386566549.log Error: can't open any of /var/tmp/from_scwrl_1386566549.pdb or /var/tmp/from_scwrl_1386566549_b.pdb or /var/tmp/from_scwrl_1386566549_a.pdb Error: no new SCWRL conformation added # naming current conformation RAPTOR-ACE_TS5-scwrl # ReadConformPDB reading from PDB file servers/RAPTORESS_TS1.pdb.gz looking for model 1 # Found a chain break before 212 # copying to AlignedFragments data structure # naming current conformation RAPTORESS_TS1 # request to SCWRL produces command: ulimit -t 207 ; scwrl -i /var/tmp/to_scwrl_1967906320.pdb -s /var/tmp/to_scwrl_1967906320.seq -o /var/tmp/from_scwrl_1967906320.pdb > /var/tmp/scwrl_1967906320.log Error: can't open any of /var/tmp/from_scwrl_1967906320.pdb or /var/tmp/from_scwrl_1967906320_b.pdb or /var/tmp/from_scwrl_1967906320_a.pdb Error: no new SCWRL conformation added # naming current conformation RAPTORESS_TS1-scwrl # ReadConformPDB reading from PDB file servers/RAPTORESS_TS2.pdb.gz looking for model 1 # Found a chain break before 215 # copying to AlignedFragments data structure # naming current conformation RAPTORESS_TS2 # request to SCWRL produces command: ulimit -t 207 ; scwrl -i /var/tmp/to_scwrl_2113339865.pdb -s /var/tmp/to_scwrl_2113339865.seq -o /var/tmp/from_scwrl_2113339865.pdb > /var/tmp/scwrl_2113339865.log Error: can't open any of /var/tmp/from_scwrl_2113339865.pdb or /var/tmp/from_scwrl_2113339865_b.pdb or /var/tmp/from_scwrl_2113339865_a.pdb Error: no new SCWRL conformation added # naming current conformation RAPTORESS_TS2-scwrl # ReadConformPDB reading from PDB file servers/RAPTORESS_TS3.pdb.gz looking for model 1 # Found a chain break before 220 # copying to AlignedFragments data structure # naming current conformation RAPTORESS_TS3 # request to SCWRL produces command: ulimit -t 207 ; scwrl -i /var/tmp/to_scwrl_927275826.pdb -s /var/tmp/to_scwrl_927275826.seq -o /var/tmp/from_scwrl_927275826.pdb > /var/tmp/scwrl_927275826.log Error: can't open any of /var/tmp/from_scwrl_927275826.pdb or /var/tmp/from_scwrl_927275826_b.pdb or /var/tmp/from_scwrl_927275826_a.pdb Error: no new SCWRL conformation added # naming current conformation RAPTORESS_TS3-scwrl # ReadConformPDB reading from PDB file servers/RAPTORESS_TS4.pdb.gz looking for model 1 # Found a chain break before 227 # copying to AlignedFragments data structure # naming current conformation RAPTORESS_TS4 # request to SCWRL produces command: ulimit -t 207 ; scwrl -i /var/tmp/to_scwrl_619273561.pdb -s /var/tmp/to_scwrl_619273561.seq -o /var/tmp/from_scwrl_619273561.pdb > /var/tmp/scwrl_619273561.log Error: can't open any of /var/tmp/from_scwrl_619273561.pdb or /var/tmp/from_scwrl_619273561_b.pdb or /var/tmp/from_scwrl_619273561_a.pdb Error: no new SCWRL conformation added # naming current conformation RAPTORESS_TS4-scwrl # ReadConformPDB reading from PDB file servers/RAPTORESS_TS5.pdb.gz looking for model 1 # Found a chain break before 214 # copying to AlignedFragments data structure # naming current conformation RAPTORESS_TS5 # request to SCWRL produces command: ulimit -t 207 ; scwrl -i /var/tmp/to_scwrl_856202769.pdb -s /var/tmp/to_scwrl_856202769.seq -o /var/tmp/from_scwrl_856202769.pdb > /var/tmp/scwrl_856202769.log Error: can't open any of /var/tmp/from_scwrl_856202769.pdb or /var/tmp/from_scwrl_856202769_b.pdb or /var/tmp/from_scwrl_856202769_a.pdb Error: no new SCWRL conformation added # naming current conformation RAPTORESS_TS5-scwrl # ReadConformPDB reading from PDB file servers/RAPTOR_TS1.pdb.gz looking for model 1 # Found a chain break before 212 # copying to AlignedFragments data structure # naming current conformation RAPTOR_TS1 # request to SCWRL produces command: ulimit -t 207 ; scwrl -i /var/tmp/to_scwrl_182427726.pdb -s /var/tmp/to_scwrl_182427726.seq -o /var/tmp/from_scwrl_182427726.pdb > /var/tmp/scwrl_182427726.log Error: can't open any of /var/tmp/from_scwrl_182427726.pdb or /var/tmp/from_scwrl_182427726_b.pdb or /var/tmp/from_scwrl_182427726_a.pdb Error: no new SCWRL conformation added # naming current conformation RAPTOR_TS1-scwrl # ReadConformPDB reading from PDB file servers/RAPTOR_TS2.pdb.gz looking for model 1 # Found a chain break before 214 # copying to AlignedFragments data structure # naming current conformation RAPTOR_TS2 # request to SCWRL produces command: ulimit -t 207 ; scwrl -i /var/tmp/to_scwrl_1751596200.pdb -s /var/tmp/to_scwrl_1751596200.seq -o /var/tmp/from_scwrl_1751596200.pdb > /var/tmp/scwrl_1751596200.log Error: can't open any of /var/tmp/from_scwrl_1751596200.pdb or /var/tmp/from_scwrl_1751596200_b.pdb or /var/tmp/from_scwrl_1751596200_a.pdb Error: no new SCWRL conformation added # naming current conformation RAPTOR_TS2-scwrl # ReadConformPDB reading from PDB file servers/RAPTOR_TS3.pdb.gz looking for model 1 # Found a chain break before 219 # copying to AlignedFragments data structure # naming current conformation RAPTOR_TS3 # request to SCWRL produces command: ulimit -t 207 ; scwrl -i /var/tmp/to_scwrl_1274217698.pdb -s /var/tmp/to_scwrl_1274217698.seq -o /var/tmp/from_scwrl_1274217698.pdb > /var/tmp/scwrl_1274217698.log Error: can't open any of /var/tmp/from_scwrl_1274217698.pdb or /var/tmp/from_scwrl_1274217698_b.pdb or /var/tmp/from_scwrl_1274217698_a.pdb Error: no new SCWRL conformation added # naming current conformation RAPTOR_TS3-scwrl # ReadConformPDB reading from PDB file servers/RAPTOR_TS4.pdb.gz looking for model 1 # Found a chain break before 222 # copying to AlignedFragments data structure # naming current conformation RAPTOR_TS4 # request to SCWRL produces command: ulimit -t 207 ; scwrl -i /var/tmp/to_scwrl_579583509.pdb -s /var/tmp/to_scwrl_579583509.seq -o /var/tmp/from_scwrl_579583509.pdb > /var/tmp/scwrl_579583509.log Error: can't open any of /var/tmp/from_scwrl_579583509.pdb or /var/tmp/from_scwrl_579583509_b.pdb or /var/tmp/from_scwrl_579583509_a.pdb Error: no new SCWRL conformation added # naming current conformation RAPTOR_TS4-scwrl # ReadConformPDB reading from PDB file servers/RAPTOR_TS5.pdb.gz looking for model 1 # Found a chain break before 214 # copying to AlignedFragments data structure # naming current conformation RAPTOR_TS5 # request to SCWRL produces command: ulimit -t 207 ; scwrl -i /var/tmp/to_scwrl_1018889841.pdb -s /var/tmp/to_scwrl_1018889841.seq -o /var/tmp/from_scwrl_1018889841.pdb > /var/tmp/scwrl_1018889841.log Error: can't open any of /var/tmp/from_scwrl_1018889841.pdb or /var/tmp/from_scwrl_1018889841_b.pdb or /var/tmp/from_scwrl_1018889841_a.pdb Error: no new SCWRL conformation added # naming current conformation RAPTOR_TS5-scwrl # ReadConformPDB reading from PDB file servers/ROBETTA_TS1.pdb.gz looking for model 1 # Found a chain break before 205 # copying to AlignedFragments data structure # naming current conformation ROBETTA_TS1 # request to SCWRL produces command: ulimit -t 207 ; scwrl -i /var/tmp/to_scwrl_1153935226.pdb -s /var/tmp/to_scwrl_1153935226.seq -o /var/tmp/from_scwrl_1153935226.pdb > /var/tmp/scwrl_1153935226.log Error: can't open any of /var/tmp/from_scwrl_1153935226.pdb or /var/tmp/from_scwrl_1153935226_b.pdb or /var/tmp/from_scwrl_1153935226_a.pdb Error: no new SCWRL conformation added # naming current conformation ROBETTA_TS1-scwrl # ReadConformPDB reading from PDB file servers/ROBETTA_TS2.pdb.gz looking for model 1 # Found a chain break before 214 # copying to AlignedFragments data structure # naming current conformation ROBETTA_TS2 # request to SCWRL produces command: ulimit -t 207 ; scwrl -i /var/tmp/to_scwrl_325142180.pdb -s /var/tmp/to_scwrl_325142180.seq -o /var/tmp/from_scwrl_325142180.pdb > /var/tmp/scwrl_325142180.log Error: can't open any of /var/tmp/from_scwrl_325142180.pdb or /var/tmp/from_scwrl_325142180_b.pdb or /var/tmp/from_scwrl_325142180_a.pdb Error: no new SCWRL conformation added # naming current conformation ROBETTA_TS2-scwrl # ReadConformPDB reading from PDB file servers/ROBETTA_TS3.pdb.gz looking for model 1 # Found a chain break before 140 # copying to AlignedFragments data structure # naming current conformation ROBETTA_TS3 # request to SCWRL produces command: ulimit -t 207 ; scwrl -i /var/tmp/to_scwrl_2075899758.pdb -s /var/tmp/to_scwrl_2075899758.seq -o /var/tmp/from_scwrl_2075899758.pdb > /var/tmp/scwrl_2075899758.log Error: can't open any of /var/tmp/from_scwrl_2075899758.pdb or /var/tmp/from_scwrl_2075899758_b.pdb or /var/tmp/from_scwrl_2075899758_a.pdb Error: no new SCWRL conformation added # naming current conformation ROBETTA_TS3-scwrl # ReadConformPDB reading from PDB file servers/ROBETTA_TS4.pdb.gz looking for model 1 # Found a chain break before 214 # copying to AlignedFragments data structure # naming current conformation ROBETTA_TS4 # request to SCWRL produces command: ulimit -t 207 ; scwrl -i /var/tmp/to_scwrl_171052928.pdb -s /var/tmp/to_scwrl_171052928.seq -o /var/tmp/from_scwrl_171052928.pdb > /var/tmp/scwrl_171052928.log Error: can't open any of /var/tmp/from_scwrl_171052928.pdb or /var/tmp/from_scwrl_171052928_b.pdb or /var/tmp/from_scwrl_171052928_a.pdb Error: no new SCWRL conformation added # naming current conformation ROBETTA_TS4-scwrl # ReadConformPDB reading from PDB file servers/ROBETTA_TS5.pdb.gz looking for model 1 # Found a chain break before 223 # copying to AlignedFragments data structure # naming current conformation ROBETTA_TS5 # request to SCWRL produces command: ulimit -t 207 ; scwrl -i /var/tmp/to_scwrl_1336357569.pdb -s /var/tmp/to_scwrl_1336357569.seq -o /var/tmp/from_scwrl_1336357569.pdb > /var/tmp/scwrl_1336357569.log Error: can't open any of /var/tmp/from_scwrl_1336357569.pdb or /var/tmp/from_scwrl_1336357569_b.pdb or /var/tmp/from_scwrl_1336357569_a.pdb Error: no new SCWRL conformation added # naming current conformation ROBETTA_TS5-scwrl # ReadConformPDB reading from PDB file servers/ROKKY_TS1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0344 can't currently be optimized by undertaker # copying to AlignedFragments data structure # naming current conformation ROKKY_TS1 # request to SCWRL produces command: ulimit -t 207 ; scwrl -i /var/tmp/to_scwrl_1690661414.pdb -s /var/tmp/to_scwrl_1690661414.seq -o /var/tmp/from_scwrl_1690661414.pdb > /var/tmp/scwrl_1690661414.log Error: can't open any of /var/tmp/from_scwrl_1690661414.pdb or /var/tmp/from_scwrl_1690661414_b.pdb or /var/tmp/from_scwrl_1690661414_a.pdb Error: no new SCWRL conformation added # naming current conformation ROKKY_TS1-scwrl # ReadConformPDB reading from PDB file servers/ROKKY_TS2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0344 can't currently be optimized by undertaker # copying to AlignedFragments data structure # naming current conformation ROKKY_TS2 # request to SCWRL produces command: ulimit -t 207 ; scwrl -i /var/tmp/to_scwrl_2144345316.pdb -s /var/tmp/to_scwrl_2144345316.seq -o /var/tmp/from_scwrl_2144345316.pdb > /var/tmp/scwrl_2144345316.log Error: can't open any of /var/tmp/from_scwrl_2144345316.pdb or /var/tmp/from_scwrl_2144345316_b.pdb or /var/tmp/from_scwrl_2144345316_a.pdb Error: no new SCWRL conformation added # naming current conformation ROKKY_TS2-scwrl # ReadConformPDB reading from PDB file servers/ROKKY_TS3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0344 can't currently be optimized by undertaker # copying to AlignedFragments data structure # naming current conformation ROKKY_TS3 # request to SCWRL produces command: ulimit -t 207 ; scwrl -i /var/tmp/to_scwrl_840887251.pdb -s /var/tmp/to_scwrl_840887251.seq -o /var/tmp/from_scwrl_840887251.pdb > /var/tmp/scwrl_840887251.log Error: can't open any of /var/tmp/from_scwrl_840887251.pdb or /var/tmp/from_scwrl_840887251_b.pdb or /var/tmp/from_scwrl_840887251_a.pdb Error: no new SCWRL conformation added # naming current conformation ROKKY_TS3-scwrl # ReadConformPDB reading from PDB file servers/ROKKY_TS4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0344 can't currently be optimized by undertaker # copying to AlignedFragments data structure # naming current conformation ROKKY_TS4 # request to SCWRL produces command: ulimit -t 207 ; scwrl -i /var/tmp/to_scwrl_1611103348.pdb -s /var/tmp/to_scwrl_1611103348.seq -o /var/tmp/from_scwrl_1611103348.pdb > /var/tmp/scwrl_1611103348.log Error: can't open any of /var/tmp/from_scwrl_1611103348.pdb or /var/tmp/from_scwrl_1611103348_b.pdb or /var/tmp/from_scwrl_1611103348_a.pdb Error: no new SCWRL conformation added # naming current conformation ROKKY_TS4-scwrl # ReadConformPDB reading from PDB file servers/ROKKY_TS5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0344 can't currently be optimized by undertaker # copying to AlignedFragments data structure # naming current conformation ROKKY_TS5 # request to SCWRL produces command: ulimit -t 207 ; scwrl -i /var/tmp/to_scwrl_560808574.pdb -s /var/tmp/to_scwrl_560808574.seq -o /var/tmp/from_scwrl_560808574.pdb > /var/tmp/scwrl_560808574.log Error: can't open any of /var/tmp/from_scwrl_560808574.pdb or /var/tmp/from_scwrl_560808574_b.pdb or /var/tmp/from_scwrl_560808574_a.pdb Error: no new SCWRL conformation added # naming current conformation ROKKY_TS5-scwrl # ReadConformPDB reading from PDB file servers/SAM-T02_AL1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0344 can't currently be optimized by undertaker # naming current conformation SAM-T02_AL1 # request to SCWRL produces command: ulimit -t 207 ; scwrl -i /var/tmp/to_scwrl_659013687.pdb -s /var/tmp/to_scwrl_659013687.seq -o /var/tmp/from_scwrl_659013687.pdb > /var/tmp/scwrl_659013687.log Error: can't open any of /var/tmp/from_scwrl_659013687.pdb or /var/tmp/from_scwrl_659013687_b.pdb or /var/tmp/from_scwrl_659013687_a.pdb Error: no new SCWRL conformation added # naming current conformation SAM-T02_AL1-scwrl # ReadConformPDB reading from PDB file servers/SAM-T02_AL2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0344 can't currently be optimized by undertaker # naming current conformation SAM-T02_AL2 # request to SCWRL produces command: ulimit -t 207 ; scwrl -i /var/tmp/to_scwrl_851894272.pdb -s /var/tmp/to_scwrl_851894272.seq -o /var/tmp/from_scwrl_851894272.pdb > /var/tmp/scwrl_851894272.log Error: can't open any of /var/tmp/from_scwrl_851894272.pdb or /var/tmp/from_scwrl_851894272_b.pdb or /var/tmp/from_scwrl_851894272_a.pdb Error: no new SCWRL conformation added # naming current conformation SAM-T02_AL2-scwrl # ReadConformPDB reading from PDB file servers/SAM-T02_AL3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0344 can't currently be optimized by undertaker # naming current conformation SAM-T02_AL3 # request to SCWRL produces command: ulimit -t 207 ; scwrl -i /var/tmp/to_scwrl_985304259.pdb -s /var/tmp/to_scwrl_985304259.seq -o /var/tmp/from_scwrl_985304259.pdb > /var/tmp/scwrl_985304259.log Error: can't open any of /var/tmp/from_scwrl_985304259.pdb or /var/tmp/from_scwrl_985304259_b.pdb or /var/tmp/from_scwrl_985304259_a.pdb Error: no new SCWRL conformation added # naming current conformation SAM-T02_AL3-scwrl # ReadConformPDB reading from PDB file servers/SAM-T02_AL4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0344 can't currently be optimized by undertaker # naming current conformation SAM-T02_AL4 # request to SCWRL produces command: ulimit -t 207 ; scwrl -i /var/tmp/to_scwrl_1022294030.pdb -s /var/tmp/to_scwrl_1022294030.seq -o /var/tmp/from_scwrl_1022294030.pdb > /var/tmp/scwrl_1022294030.log Error: can't open any of /var/tmp/from_scwrl_1022294030.pdb or /var/tmp/from_scwrl_1022294030_b.pdb or /var/tmp/from_scwrl_1022294030_a.pdb Error: no new SCWRL conformation added # naming current conformation SAM-T02_AL4-scwrl # ReadConformPDB reading from PDB file servers/SAM-T02_AL5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0344 can't currently be optimized by undertaker # naming current conformation SAM-T02_AL5 # request to SCWRL produces command: ulimit -t 207 ; scwrl -i /var/tmp/to_scwrl_161419029.pdb -s /var/tmp/to_scwrl_161419029.seq -o /var/tmp/from_scwrl_161419029.pdb > /var/tmp/scwrl_161419029.log Error: can't open any of /var/tmp/from_scwrl_161419029.pdb or /var/tmp/from_scwrl_161419029_b.pdb or /var/tmp/from_scwrl_161419029_a.pdb Error: no new SCWRL conformation added # naming current conformation SAM-T02_AL5-scwrl # ReadConformPDB reading from PDB file servers/SAM-T99_AL1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0344 can't currently be optimized by undertaker # naming current conformation SAM-T99_AL1 # request to SCWRL produces command: ulimit -t 207 ; scwrl -i /var/tmp/to_scwrl_789376339.pdb -s /var/tmp/to_scwrl_789376339.seq -o /var/tmp/from_scwrl_789376339.pdb > /var/tmp/scwrl_789376339.log Error: can't open any of /var/tmp/from_scwrl_789376339.pdb or /var/tmp/from_scwrl_789376339_b.pdb or /var/tmp/from_scwrl_789376339_a.pdb Error: no new SCWRL conformation added # naming current conformation SAM-T99_AL1-scwrl # ReadConformPDB reading from PDB file servers/SAM_T06_server_TS1.pdb.gz looking for model 1 # Found a chain break before 224 # copying to AlignedFragments data structure # naming current conformation SAM_T06_server_TS1 # request to SCWRL produces command: ulimit -t 207 ; scwrl -i /var/tmp/to_scwrl_589000668.pdb -s /var/tmp/to_scwrl_589000668.seq -o /var/tmp/from_scwrl_589000668.pdb > /var/tmp/scwrl_589000668.log Error: can't open any of /var/tmp/from_scwrl_589000668.pdb or /var/tmp/from_scwrl_589000668_b.pdb or /var/tmp/from_scwrl_589000668_a.pdb Error: no new SCWRL conformation added # naming current conformation SAM_T06_server_TS1-scwrl # ReadConformPDB reading from PDB file servers/SAM_T06_server_TS2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0344 can't currently be optimized by undertaker # naming current conformation SAM_T06_server_TS2 # request to SCWRL produces command: ulimit -t 207 ; scwrl -i /var/tmp/to_scwrl_1604076259.pdb -s /var/tmp/to_scwrl_1604076259.seq -o /var/tmp/from_scwrl_1604076259.pdb > /var/tmp/scwrl_1604076259.log Error: can't open any of /var/tmp/from_scwrl_1604076259.pdb or /var/tmp/from_scwrl_1604076259_b.pdb or /var/tmp/from_scwrl_1604076259_a.pdb Error: no new SCWRL conformation added # naming current conformation SAM_T06_server_TS2-scwrl # ReadConformPDB reading from PDB file servers/SAM_T06_server_TS3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0344 can't currently be optimized by undertaker # naming current conformation SAM_T06_server_TS3 # request to SCWRL produces command: ulimit -t 207 ; scwrl -i /var/tmp/to_scwrl_1932421787.pdb -s /var/tmp/to_scwrl_1932421787.seq -o /var/tmp/from_scwrl_1932421787.pdb > /var/tmp/scwrl_1932421787.log Error: can't open any of /var/tmp/from_scwrl_1932421787.pdb or /var/tmp/from_scwrl_1932421787_b.pdb or /var/tmp/from_scwrl_1932421787_a.pdb Error: no new SCWRL conformation added # naming current conformation SAM_T06_server_TS3-scwrl # ReadConformPDB reading from PDB file servers/SAM_T06_server_TS4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0344 can't currently be optimized by undertaker # naming current conformation SAM_T06_server_TS4 # request to SCWRL produces command: ulimit -t 207 ; scwrl -i /var/tmp/to_scwrl_264972090.pdb -s /var/tmp/to_scwrl_264972090.seq -o /var/tmp/from_scwrl_264972090.pdb > /var/tmp/scwrl_264972090.log Error: can't open any of /var/tmp/from_scwrl_264972090.pdb or /var/tmp/from_scwrl_264972090_b.pdb or /var/tmp/from_scwrl_264972090_a.pdb Error: no new SCWRL conformation added # naming current conformation SAM_T06_server_TS4-scwrl # ReadConformPDB reading from PDB file servers/SAM_T06_server_TS5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0344 can't currently be optimized by undertaker # naming current conformation SAM_T06_server_TS5 # request to SCWRL produces command: ulimit -t 207 ; scwrl -i /var/tmp/to_scwrl_843159162.pdb -s /var/tmp/to_scwrl_843159162.seq -o /var/tmp/from_scwrl_843159162.pdb > /var/tmp/scwrl_843159162.log Error: can't open any of /var/tmp/from_scwrl_843159162.pdb or /var/tmp/from_scwrl_843159162_b.pdb or /var/tmp/from_scwrl_843159162_a.pdb Error: no new SCWRL conformation added # naming current conformation SAM_T06_server_TS5-scwrl # ReadConformPDB reading from PDB file servers/SP3_TS1.pdb.gz looking for model 1 # Found a chain break before 204 # copying to AlignedFragments data structure # naming current conformation SP3_TS1 # request to SCWRL produces command: ulimit -t 207 ; scwrl -i /var/tmp/to_scwrl_1752844461.pdb -s /var/tmp/to_scwrl_1752844461.seq -o /var/tmp/from_scwrl_1752844461.pdb > /var/tmp/scwrl_1752844461.log Error: can't open any of /var/tmp/from_scwrl_1752844461.pdb or /var/tmp/from_scwrl_1752844461_b.pdb or /var/tmp/from_scwrl_1752844461_a.pdb Error: no new SCWRL conformation added # naming current conformation SP3_TS1-scwrl # ReadConformPDB reading from PDB file servers/SP3_TS2.pdb.gz looking for model 1 # Found a chain break before 195 # copying to AlignedFragments data structure # naming current conformation SP3_TS2 # request to SCWRL produces command: ulimit -t 207 ; scwrl -i /var/tmp/to_scwrl_230828308.pdb -s /var/tmp/to_scwrl_230828308.seq -o /var/tmp/from_scwrl_230828308.pdb > /var/tmp/scwrl_230828308.log Error: can't open any of /var/tmp/from_scwrl_230828308.pdb or /var/tmp/from_scwrl_230828308_b.pdb or /var/tmp/from_scwrl_230828308_a.pdb Error: no new SCWRL conformation added # naming current conformation SP3_TS2-scwrl # ReadConformPDB reading from PDB file servers/SP3_TS3.pdb.gz looking for model 1 # Found a chain break before 223 # copying to AlignedFragments data structure # naming current conformation SP3_TS3 # request to SCWRL produces command: ulimit -t 207 ; scwrl -i /var/tmp/to_scwrl_1770434987.pdb -s /var/tmp/to_scwrl_1770434987.seq -o /var/tmp/from_scwrl_1770434987.pdb > /var/tmp/scwrl_1770434987.log Error: can't open any of /var/tmp/from_scwrl_1770434987.pdb or /var/tmp/from_scwrl_1770434987_b.pdb or /var/tmp/from_scwrl_1770434987_a.pdb Error: no new SCWRL conformation added # naming current conformation SP3_TS3-scwrl # ReadConformPDB reading from PDB file servers/SP3_TS4.pdb.gz looking for model 1 # Found a chain break before 209 # copying to AlignedFragments data structure # naming current conformation SP3_TS4 # request to SCWRL produces command: ulimit -t 207 ; scwrl -i /var/tmp/to_scwrl_224634375.pdb -s /var/tmp/to_scwrl_224634375.seq -o /var/tmp/from_scwrl_224634375.pdb > /var/tmp/scwrl_224634375.log Error: can't open any of /var/tmp/from_scwrl_224634375.pdb or /var/tmp/from_scwrl_224634375_b.pdb or /var/tmp/from_scwrl_224634375_a.pdb Error: no new SCWRL conformation added # naming current conformation SP3_TS4-scwrl # ReadConformPDB reading from PDB file servers/SP3_TS5.pdb.gz looking for model 1 # Found a chain break before 181 # copying to AlignedFragments data structure # naming current conformation SP3_TS5 # request to SCWRL produces command: ulimit -t 207 ; scwrl -i /var/tmp/to_scwrl_1087031077.pdb -s /var/tmp/to_scwrl_1087031077.seq -o /var/tmp/from_scwrl_1087031077.pdb > /var/tmp/scwrl_1087031077.log Error: can't open any of /var/tmp/from_scwrl_1087031077.pdb or /var/tmp/from_scwrl_1087031077_b.pdb or /var/tmp/from_scwrl_1087031077_a.pdb Error: no new SCWRL conformation added # naming current conformation SP3_TS5-scwrl # ReadConformPDB reading from PDB file servers/SP4_TS1.pdb.gz looking for model 1 # Found a chain break before 224 # copying to AlignedFragments data structure # naming current conformation SP4_TS1 # request to SCWRL produces command: ulimit -t 207 ; scwrl -i /var/tmp/to_scwrl_1952862713.pdb -s /var/tmp/to_scwrl_1952862713.seq -o /var/tmp/from_scwrl_1952862713.pdb > /var/tmp/scwrl_1952862713.log Error: can't open any of /var/tmp/from_scwrl_1952862713.pdb or /var/tmp/from_scwrl_1952862713_b.pdb or /var/tmp/from_scwrl_1952862713_a.pdb Error: no new SCWRL conformation added # naming current conformation SP4_TS1-scwrl # ReadConformPDB reading from PDB file servers/SP4_TS2.pdb.gz looking for model 1 # Found a chain break before 137 # copying to AlignedFragments data structure # naming current conformation SP4_TS2 # request to SCWRL produces command: ulimit -t 207 ; scwrl -i /var/tmp/to_scwrl_1976230575.pdb -s /var/tmp/to_scwrl_1976230575.seq -o /var/tmp/from_scwrl_1976230575.pdb > /var/tmp/scwrl_1976230575.log Error: can't open any of /var/tmp/from_scwrl_1976230575.pdb or /var/tmp/from_scwrl_1976230575_b.pdb or /var/tmp/from_scwrl_1976230575_a.pdb Error: no new SCWRL conformation added # naming current conformation SP4_TS2-scwrl # ReadConformPDB reading from PDB file servers/SP4_TS3.pdb.gz looking for model 1 # Found a chain break before 183 # copying to AlignedFragments data structure # naming current conformation SP4_TS3 # request to SCWRL produces command: ulimit -t 207 ; scwrl -i /var/tmp/to_scwrl_213765129.pdb -s /var/tmp/to_scwrl_213765129.seq -o /var/tmp/from_scwrl_213765129.pdb > /var/tmp/scwrl_213765129.log Error: can't open any of /var/tmp/from_scwrl_213765129.pdb or /var/tmp/from_scwrl_213765129_b.pdb or /var/tmp/from_scwrl_213765129_a.pdb Error: no new SCWRL conformation added # naming current conformation SP4_TS3-scwrl # ReadConformPDB reading from PDB file servers/SP4_TS4.pdb.gz looking for model 1 # Found a chain break before 224 # copying to AlignedFragments data structure # naming current conformation SP4_TS4 # request to SCWRL produces command: ulimit -t 207 ; scwrl -i /var/tmp/to_scwrl_384962575.pdb -s /var/tmp/to_scwrl_384962575.seq -o /var/tmp/from_scwrl_384962575.pdb > /var/tmp/scwrl_384962575.log Error: can't open any of /var/tmp/from_scwrl_384962575.pdb or /var/tmp/from_scwrl_384962575_b.pdb or /var/tmp/from_scwrl_384962575_a.pdb Error: no new SCWRL conformation added # naming current conformation SP4_TS4-scwrl # ReadConformPDB reading from PDB file servers/SP4_TS5.pdb.gz looking for model 1 # Found a chain break before 202 # copying to AlignedFragments data structure # naming current conformation SP4_TS5 # request to SCWRL produces command: ulimit -t 207 ; scwrl -i /var/tmp/to_scwrl_847636769.pdb -s /var/tmp/to_scwrl_847636769.seq -o /var/tmp/from_scwrl_847636769.pdb > /var/tmp/scwrl_847636769.log Error: can't open any of /var/tmp/from_scwrl_847636769.pdb or /var/tmp/from_scwrl_847636769_b.pdb or /var/tmp/from_scwrl_847636769_a.pdb Error: no new SCWRL conformation added # naming current conformation SP4_TS5-scwrl # ReadConformPDB reading from PDB file servers/SPARKS2_TS1.pdb.gz looking for model 1 # Found a chain break before 177 # copying to AlignedFragments data structure # naming current conformation SPARKS2_TS1 # request to SCWRL produces command: ulimit -t 207 ; scwrl -i /var/tmp/to_scwrl_1367700355.pdb -s /var/tmp/to_scwrl_1367700355.seq -o /var/tmp/from_scwrl_1367700355.pdb > /var/tmp/scwrl_1367700355.log Error: can't open any of /var/tmp/from_scwrl_1367700355.pdb or /var/tmp/from_scwrl_1367700355_b.pdb or /var/tmp/from_scwrl_1367700355_a.pdb Error: no new SCWRL conformation added # naming current conformation SPARKS2_TS1-scwrl # ReadConformPDB reading from PDB file servers/SPARKS2_TS2.pdb.gz looking for model 1 # Found a chain break before 171 # copying to AlignedFragments data structure # naming current conformation SPARKS2_TS2 # request to SCWRL produces command: ulimit -t 207 ; scwrl -i /var/tmp/to_scwrl_710104756.pdb -s /var/tmp/to_scwrl_710104756.seq -o /var/tmp/from_scwrl_710104756.pdb > /var/tmp/scwrl_710104756.log Error: can't open any of /var/tmp/from_scwrl_710104756.pdb or /var/tmp/from_scwrl_710104756_b.pdb or /var/tmp/from_scwrl_710104756_a.pdb Error: no new SCWRL conformation added # naming current conformation SPARKS2_TS2-scwrl # ReadConformPDB reading from PDB file servers/SPARKS2_TS3.pdb.gz looking for model 1 # Found a chain break before 216 # copying to AlignedFragments data structure # naming current conformation SPARKS2_TS3 # request to SCWRL produces command: ulimit -t 207 ; scwrl -i /var/tmp/to_scwrl_776052880.pdb -s /var/tmp/to_scwrl_776052880.seq -o /var/tmp/from_scwrl_776052880.pdb > /var/tmp/scwrl_776052880.log Error: can't open any of /var/tmp/from_scwrl_776052880.pdb or /var/tmp/from_scwrl_776052880_b.pdb or /var/tmp/from_scwrl_776052880_a.pdb Error: no new SCWRL conformation added # naming current conformation SPARKS2_TS3-scwrl # ReadConformPDB reading from PDB file servers/SPARKS2_TS4.pdb.gz looking for model 1 # Found a chain break before 219 # copying to AlignedFragments data structure # naming current conformation SPARKS2_TS4 # request to SCWRL produces command: ulimit -t 207 ; scwrl -i /var/tmp/to_scwrl_1538753283.pdb -s /var/tmp/to_scwrl_1538753283.seq -o /var/tmp/from_scwrl_1538753283.pdb > /var/tmp/scwrl_1538753283.log Error: can't open any of /var/tmp/from_scwrl_1538753283.pdb or /var/tmp/from_scwrl_1538753283_b.pdb or /var/tmp/from_scwrl_1538753283_a.pdb Error: no new SCWRL conformation added # naming current conformation SPARKS2_TS4-scwrl # ReadConformPDB reading from PDB file servers/SPARKS2_TS5.pdb.gz looking for model 1 # Found a chain break before 182 # copying to AlignedFragments data structure # naming current conformation SPARKS2_TS5 # request to SCWRL produces command: ulimit -t 207 ; scwrl -i /var/tmp/to_scwrl_2046462325.pdb -s /var/tmp/to_scwrl_2046462325.seq -o /var/tmp/from_scwrl_2046462325.pdb > /var/tmp/scwrl_2046462325.log Error: can't open any of /var/tmp/from_scwrl_2046462325.pdb or /var/tmp/from_scwrl_2046462325_b.pdb or /var/tmp/from_scwrl_2046462325_a.pdb Error: no new SCWRL conformation added # naming current conformation SPARKS2_TS5-scwrl # ReadConformPDB reading from PDB file servers/UNI-EID_bnmx_TS1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0344 can't currently be optimized by undertaker # naming current conformation UNI-EID_bnmx_TS1 # request to SCWRL produces command: ulimit -t 207 ; scwrl -i /var/tmp/to_scwrl_319230648.pdb -s /var/tmp/to_scwrl_319230648.seq -o /var/tmp/from_scwrl_319230648.pdb > /var/tmp/scwrl_319230648.log Error: can't open any of /var/tmp/from_scwrl_319230648.pdb or /var/tmp/from_scwrl_319230648_b.pdb or /var/tmp/from_scwrl_319230648_a.pdb Error: no new SCWRL conformation added # naming current conformation UNI-EID_bnmx_TS1-scwrl # ReadConformPDB reading from PDB file servers/UNI-EID_bnmx_TS2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0344 can't currently be optimized by undertaker # naming current conformation UNI-EID_bnmx_TS2 # request to SCWRL produces command: ulimit -t 207 ; scwrl -i /var/tmp/to_scwrl_1535614952.pdb -s /var/tmp/to_scwrl_1535614952.seq -o /var/tmp/from_scwrl_1535614952.pdb > /var/tmp/scwrl_1535614952.log Error: can't open any of /var/tmp/from_scwrl_1535614952.pdb or /var/tmp/from_scwrl_1535614952_b.pdb or /var/tmp/from_scwrl_1535614952_a.pdb Error: no new SCWRL conformation added # naming current conformation UNI-EID_bnmx_TS2-scwrl # ReadConformPDB reading from PDB file servers/UNI-EID_bnmx_TS3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0344 can't currently be optimized by undertaker # naming current conformation UNI-EID_bnmx_TS3 # request to SCWRL produces command: ulimit -t 207 ; scwrl -i /var/tmp/to_scwrl_739865930.pdb -s /var/tmp/to_scwrl_739865930.seq -o /var/tmp/from_scwrl_739865930.pdb > /var/tmp/scwrl_739865930.log Error: can't open any of /var/tmp/from_scwrl_739865930.pdb or /var/tmp/from_scwrl_739865930_b.pdb or /var/tmp/from_scwrl_739865930_a.pdb Error: no new SCWRL conformation added # naming current conformation UNI-EID_bnmx_TS3-scwrl # ReadConformPDB reading from PDB file servers/UNI-EID_bnmx_TS4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0344 can't currently be optimized by undertaker # naming current conformation UNI-EID_bnmx_TS4 # request to SCWRL produces command: ulimit -t 207 ; scwrl -i /var/tmp/to_scwrl_1930333996.pdb -s /var/tmp/to_scwrl_1930333996.seq -o /var/tmp/from_scwrl_1930333996.pdb > /var/tmp/scwrl_1930333996.log Error: can't open any of /var/tmp/from_scwrl_1930333996.pdb or /var/tmp/from_scwrl_1930333996_b.pdb or /var/tmp/from_scwrl_1930333996_a.pdb Error: no new SCWRL conformation added # naming current conformation UNI-EID_bnmx_TS4-scwrl # ReadConformPDB reading from PDB file servers/UNI-EID_bnmx_TS5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0344 can't currently be optimized by undertaker # naming current conformation UNI-EID_bnmx_TS5 # request to SCWRL produces command: ulimit -t 207 ; scwrl -i /var/tmp/to_scwrl_2096423526.pdb -s /var/tmp/to_scwrl_2096423526.seq -o /var/tmp/from_scwrl_2096423526.pdb > /var/tmp/scwrl_2096423526.log Error: can't open any of /var/tmp/from_scwrl_2096423526.pdb or /var/tmp/from_scwrl_2096423526_b.pdb or /var/tmp/from_scwrl_2096423526_a.pdb Error: no new SCWRL conformation added # naming current conformation UNI-EID_bnmx_TS5-scwrl # ReadConformPDB reading from PDB file servers/UNI-EID_expm_TS1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0344 can't currently be optimized by undertaker # naming current conformation UNI-EID_expm_TS1 # request to SCWRL produces command: ulimit -t 207 ; scwrl -i /var/tmp/to_scwrl_1398879616.pdb -s /var/tmp/to_scwrl_1398879616.seq -o /var/tmp/from_scwrl_1398879616.pdb > /var/tmp/scwrl_1398879616.log Error: can't open any of /var/tmp/from_scwrl_1398879616.pdb or /var/tmp/from_scwrl_1398879616_b.pdb or /var/tmp/from_scwrl_1398879616_a.pdb Error: no new SCWRL conformation added # naming current conformation UNI-EID_expm_TS1-scwrl # ReadConformPDB reading from PDB file servers/UNI-EID_sfst_AL1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0344 can't currently be optimized by undertaker # naming current conformation UNI-EID_sfst_AL1 # request to SCWRL produces command: ulimit -t 207 ; scwrl -i /var/tmp/to_scwrl_634744621.pdb -s /var/tmp/to_scwrl_634744621.seq -o /var/tmp/from_scwrl_634744621.pdb > /var/tmp/scwrl_634744621.log Error: can't open any of /var/tmp/from_scwrl_634744621.pdb or /var/tmp/from_scwrl_634744621_b.pdb or /var/tmp/from_scwrl_634744621_a.pdb Error: no new SCWRL conformation added # naming current conformation UNI-EID_sfst_AL1-scwrl # ReadConformPDB reading from PDB file servers/UNI-EID_sfst_AL2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0344 can't currently be optimized by undertaker # naming current conformation UNI-EID_sfst_AL2 # request to SCWRL produces command: ulimit -t 207 ; scwrl -i /var/tmp/to_scwrl_934244138.pdb -s /var/tmp/to_scwrl_934244138.seq -o /var/tmp/from_scwrl_934244138.pdb > /var/tmp/scwrl_934244138.log Error: can't open any of /var/tmp/from_scwrl_934244138.pdb or /var/tmp/from_scwrl_934244138_b.pdb or /var/tmp/from_scwrl_934244138_a.pdb Error: no new SCWRL conformation added # naming current conformation UNI-EID_sfst_AL2-scwrl # ReadConformPDB reading from PDB file servers/UNI-EID_sfst_AL3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0344 can't currently be optimized by undertaker # naming current conformation UNI-EID_sfst_AL3 # request to SCWRL produces command: ulimit -t 207 ; scwrl -i /var/tmp/to_scwrl_273689999.pdb -s /var/tmp/to_scwrl_273689999.seq -o /var/tmp/from_scwrl_273689999.pdb > /var/tmp/scwrl_273689999.log Error: can't open any of /var/tmp/from_scwrl_273689999.pdb or /var/tmp/from_scwrl_273689999_b.pdb or /var/tmp/from_scwrl_273689999_a.pdb Error: no new SCWRL conformation added # naming current conformation UNI-EID_sfst_AL3-scwrl # ReadConformPDB reading from PDB file servers/UNI-EID_sfst_AL4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0344 can't currently be optimized by undertaker # naming current conformation UNI-EID_sfst_AL4 # request to SCWRL produces command: ulimit -t 207 ; scwrl -i /var/tmp/to_scwrl_796163651.pdb -s /var/tmp/to_scwrl_796163651.seq -o /var/tmp/from_scwrl_796163651.pdb > /var/tmp/scwrl_796163651.log Error: can't open any of /var/tmp/from_scwrl_796163651.pdb or /var/tmp/from_scwrl_796163651_b.pdb or /var/tmp/from_scwrl_796163651_a.pdb Error: no new SCWRL conformation added # naming current conformation UNI-EID_sfst_AL4-scwrl # ReadConformPDB reading from PDB file servers/UNI-EID_sfst_AL5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0344 can't currently be optimized by undertaker # naming current conformation UNI-EID_sfst_AL5 # request to SCWRL produces command: ulimit -t 207 ; scwrl -i /var/tmp/to_scwrl_1723620476.pdb -s /var/tmp/to_scwrl_1723620476.seq -o /var/tmp/from_scwrl_1723620476.pdb > /var/tmp/scwrl_1723620476.log Error: can't open any of /var/tmp/from_scwrl_1723620476.pdb or /var/tmp/from_scwrl_1723620476_b.pdb or /var/tmp/from_scwrl_1723620476_a.pdb Error: no new SCWRL conformation added # naming current conformation UNI-EID_sfst_AL5-scwrl # ReadConformPDB reading from PDB file servers/Zhang-Server_TS1.pdb.gz looking for model 1 # Found a chain break before 226 # copying to AlignedFragments data structure # naming current conformation Zhang-Server_TS1 # request to SCWRL produces command: ulimit -t 207 ; scwrl -i /var/tmp/to_scwrl_862690668.pdb -s /var/tmp/to_scwrl_862690668.seq -o /var/tmp/from_scwrl_862690668.pdb > /var/tmp/scwrl_862690668.log Error: can't open any of /var/tmp/from_scwrl_862690668.pdb or /var/tmp/from_scwrl_862690668_b.pdb or /var/tmp/from_scwrl_862690668_a.pdb Error: no new SCWRL conformation added # naming current conformation Zhang-Server_TS1-scwrl # ReadConformPDB reading from PDB file servers/Zhang-Server_TS2.pdb.gz looking for model 1 # Found a chain break before 225 # copying to AlignedFragments data structure # naming current conformation Zhang-Server_TS2 # request to SCWRL produces command: ulimit -t 207 ; scwrl -i /var/tmp/to_scwrl_252756263.pdb -s /var/tmp/to_scwrl_252756263.seq -o /var/tmp/from_scwrl_252756263.pdb > /var/tmp/scwrl_252756263.log Error: can't open any of /var/tmp/from_scwrl_252756263.pdb or /var/tmp/from_scwrl_252756263_b.pdb or /var/tmp/from_scwrl_252756263_a.pdb Error: no new SCWRL conformation added # naming current conformation Zhang-Server_TS2-scwrl # ReadConformPDB reading from PDB file servers/Zhang-Server_TS3.pdb.gz looking for model 1 # Found a chain break before 224 # copying to AlignedFragments data structure # naming current conformation Zhang-Server_TS3 # request to SCWRL produces command: ulimit -t 207 ; scwrl -i /var/tmp/to_scwrl_1508558616.pdb -s /var/tmp/to_scwrl_1508558616.seq -o /var/tmp/from_scwrl_1508558616.pdb > /var/tmp/scwrl_1508558616.log Error: can't open any of /var/tmp/from_scwrl_1508558616.pdb or /var/tmp/from_scwrl_1508558616_b.pdb or /var/tmp/from_scwrl_1508558616_a.pdb Error: no new SCWRL conformation added # naming current conformation Zhang-Server_TS3-scwrl # ReadConformPDB reading from PDB file servers/Zhang-Server_TS4.pdb.gz looking for model 1 # Found a chain break before 212 # copying to AlignedFragments data structure # naming current conformation Zhang-Server_TS4 # request to SCWRL produces command: ulimit -t 207 ; scwrl -i /var/tmp/to_scwrl_1127662757.pdb -s /var/tmp/to_scwrl_1127662757.seq -o /var/tmp/from_scwrl_1127662757.pdb > /var/tmp/scwrl_1127662757.log Error: can't open any of /var/tmp/from_scwrl_1127662757.pdb or /var/tmp/from_scwrl_1127662757_b.pdb or /var/tmp/from_scwrl_1127662757_a.pdb Error: no new SCWRL conformation added # naming current conformation Zhang-Server_TS4-scwrl # ReadConformPDB reading from PDB file servers/Zhang-Server_TS5.pdb.gz looking for model 1 # Found a chain break before 222 # copying to AlignedFragments data structure # naming current conformation Zhang-Server_TS5 # request to SCWRL produces command: ulimit -t 207 ; scwrl -i /var/tmp/to_scwrl_1095915425.pdb -s /var/tmp/to_scwrl_1095915425.seq -o /var/tmp/from_scwrl_1095915425.pdb > /var/tmp/scwrl_1095915425.log Error: can't open any of /var/tmp/from_scwrl_1095915425.pdb or /var/tmp/from_scwrl_1095915425_b.pdb or /var/tmp/from_scwrl_1095915425_a.pdb Error: no new SCWRL conformation added # naming current conformation Zhang-Server_TS5-scwrl # ReadConformPDB reading from PDB file servers/beautshot_TS1.pdb.gz looking for model 1 # Found a chain break before 227 # copying to AlignedFragments data structure # naming current conformation beautshot_TS1 # request to SCWRL produces command: ulimit -t 207 ; scwrl -i /var/tmp/to_scwrl_1113919430.pdb -s /var/tmp/to_scwrl_1113919430.seq -o /var/tmp/from_scwrl_1113919430.pdb > /var/tmp/scwrl_1113919430.log Error: can't open any of /var/tmp/from_scwrl_1113919430.pdb or /var/tmp/from_scwrl_1113919430_b.pdb or /var/tmp/from_scwrl_1113919430_a.pdb Error: no new SCWRL conformation added # naming current conformation beautshot_TS1-scwrl # ReadConformPDB reading from PDB file servers/beautshotbase_TS1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0344 can't currently be optimized by undertaker # naming current conformation beautshotbase_TS1 # request to SCWRL produces command: ulimit -t 207 ; scwrl -i /var/tmp/to_scwrl_1358491065.pdb -s /var/tmp/to_scwrl_1358491065.seq -o /var/tmp/from_scwrl_1358491065.pdb > /var/tmp/scwrl_1358491065.log Error: can't open any of /var/tmp/from_scwrl_1358491065.pdb or /var/tmp/from_scwrl_1358491065_b.pdb or /var/tmp/from_scwrl_1358491065_a.pdb Error: no new SCWRL conformation added # naming current conformation beautshotbase_TS1-scwrl # ReadConformPDB reading from PDB file servers/forecast-s_AL1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0344 can't currently be optimized by undertaker # naming current conformation forecast-s_AL1 # request to SCWRL produces command: ulimit -t 207 ; scwrl -i /var/tmp/to_scwrl_718866766.pdb -s /var/tmp/to_scwrl_718866766.seq -o /var/tmp/from_scwrl_718866766.pdb > /var/tmp/scwrl_718866766.log Error: can't open any of /var/tmp/from_scwrl_718866766.pdb or /var/tmp/from_scwrl_718866766_b.pdb or /var/tmp/from_scwrl_718866766_a.pdb Error: no new SCWRL conformation added # naming current conformation forecast-s_AL1-scwrl # ReadConformPDB reading from PDB file servers/forecast-s_AL2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0344 can't currently be optimized by undertaker # naming current conformation forecast-s_AL2 # request to SCWRL produces command: ulimit -t 207 ; scwrl -i /var/tmp/to_scwrl_1338553805.pdb -s /var/tmp/to_scwrl_1338553805.seq -o /var/tmp/from_scwrl_1338553805.pdb > /var/tmp/scwrl_1338553805.log Error: can't open any of /var/tmp/from_scwrl_1338553805.pdb or /var/tmp/from_scwrl_1338553805_b.pdb or /var/tmp/from_scwrl_1338553805_a.pdb Error: no new SCWRL conformation added # naming current conformation forecast-s_AL2-scwrl # ReadConformPDB reading from PDB file servers/forecast-s_AL3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0344 can't currently be optimized by undertaker # naming current conformation forecast-s_AL3 # request to SCWRL produces command: ulimit -t 207 ; scwrl -i /var/tmp/to_scwrl_298038496.pdb -s /var/tmp/to_scwrl_298038496.seq -o /var/tmp/from_scwrl_298038496.pdb > /var/tmp/scwrl_298038496.log Error: can't open any of /var/tmp/from_scwrl_298038496.pdb or /var/tmp/from_scwrl_298038496_b.pdb or /var/tmp/from_scwrl_298038496_a.pdb Error: no new SCWRL conformation added # naming current conformation forecast-s_AL3-scwrl # ReadConformPDB reading from PDB file servers/forecast-s_AL4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0344 can't currently be optimized by undertaker # naming current conformation forecast-s_AL4 # request to SCWRL produces command: ulimit -t 207 ; scwrl -i /var/tmp/to_scwrl_524245833.pdb -s /var/tmp/to_scwrl_524245833.seq -o /var/tmp/from_scwrl_524245833.pdb > /var/tmp/scwrl_524245833.log Error: can't open any of /var/tmp/from_scwrl_524245833.pdb or /var/tmp/from_scwrl_524245833_b.pdb or /var/tmp/from_scwrl_524245833_a.pdb Error: no new SCWRL conformation added # naming current conformation forecast-s_AL4-scwrl # ReadConformPDB reading from PDB file servers/forecast-s_AL5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0344 can't currently be optimized by undertaker # naming current conformation forecast-s_AL5 # request to SCWRL produces command: ulimit -t 207 ; scwrl -i /var/tmp/to_scwrl_1167300733.pdb -s /var/tmp/to_scwrl_1167300733.seq -o /var/tmp/from_scwrl_1167300733.pdb > /var/tmp/scwrl_1167300733.log Error: can't open any of /var/tmp/from_scwrl_1167300733.pdb or /var/tmp/from_scwrl_1167300733_b.pdb or /var/tmp/from_scwrl_1167300733_a.pdb Error: no new SCWRL conformation added # naming current conformation forecast-s_AL5-scwrl # ReadConformPDB reading from PDB file servers/karypis.srv.2_TS1.pdb.gz looking for model 1 # Found a chain break before 173 # copying to AlignedFragments data structure # naming current conformation karypis.srv.2_TS1 # request to SCWRL produces command: ulimit -t 207 ; scwrl -i /var/tmp/to_scwrl_511803625.pdb -s /var/tmp/to_scwrl_511803625.seq -o /var/tmp/from_scwrl_511803625.pdb > /var/tmp/scwrl_511803625.log Error: can't open any of /var/tmp/from_scwrl_511803625.pdb or /var/tmp/from_scwrl_511803625_b.pdb or /var/tmp/from_scwrl_511803625_a.pdb Error: no new SCWRL conformation added # naming current conformation karypis.srv.2_TS1-scwrl # ReadConformPDB reading from PDB file servers/karypis.srv.2_TS2.pdb.gz looking for model 1 # Found a chain break before 220 # copying to AlignedFragments data structure # naming current conformation karypis.srv.2_TS2 # request to SCWRL produces command: ulimit -t 207 ; scwrl -i /var/tmp/to_scwrl_909208408.pdb -s /var/tmp/to_scwrl_909208408.seq -o /var/tmp/from_scwrl_909208408.pdb > /var/tmp/scwrl_909208408.log Error: can't open any of /var/tmp/from_scwrl_909208408.pdb or /var/tmp/from_scwrl_909208408_b.pdb or /var/tmp/from_scwrl_909208408_a.pdb Error: no new SCWRL conformation added # naming current conformation karypis.srv.2_TS2-scwrl # ReadConformPDB reading from PDB file servers/karypis.srv.2_TS3.pdb.gz looking for model 1 # Found a chain break before 185 # copying to AlignedFragments data structure # naming current conformation karypis.srv.2_TS3 # request to SCWRL produces command: ulimit -t 207 ; scwrl -i /var/tmp/to_scwrl_2014937503.pdb -s /var/tmp/to_scwrl_2014937503.seq -o /var/tmp/from_scwrl_2014937503.pdb > /var/tmp/scwrl_2014937503.log Error: can't open any of /var/tmp/from_scwrl_2014937503.pdb or /var/tmp/from_scwrl_2014937503_b.pdb or /var/tmp/from_scwrl_2014937503_a.pdb Error: no new SCWRL conformation added # naming current conformation karypis.srv.2_TS3-scwrl # ReadConformPDB reading from PDB file servers/karypis.srv.2_TS4.pdb.gz looking for model 1 # Found a chain break before 200 # copying to AlignedFragments data structure # naming current conformation karypis.srv.2_TS4 # request to SCWRL produces command: ulimit -t 207 ; scwrl -i /var/tmp/to_scwrl_1879503980.pdb -s /var/tmp/to_scwrl_1879503980.seq -o /var/tmp/from_scwrl_1879503980.pdb > /var/tmp/scwrl_1879503980.log Error: can't open any of /var/tmp/from_scwrl_1879503980.pdb or /var/tmp/from_scwrl_1879503980_b.pdb or /var/tmp/from_scwrl_1879503980_a.pdb Error: no new SCWRL conformation added # naming current conformation karypis.srv.2_TS4-scwrl # ReadConformPDB reading from PDB file servers/karypis.srv.2_TS5.pdb.gz looking for model 1 # Found a chain break before 172 # copying to AlignedFragments data structure # naming current conformation karypis.srv.2_TS5 # request to SCWRL produces command: ulimit -t 207 ; scwrl -i /var/tmp/to_scwrl_1619313163.pdb -s /var/tmp/to_scwrl_1619313163.seq -o /var/tmp/from_scwrl_1619313163.pdb > /var/tmp/scwrl_1619313163.log Error: can't open any of /var/tmp/from_scwrl_1619313163.pdb or /var/tmp/from_scwrl_1619313163_b.pdb or /var/tmp/from_scwrl_1619313163_a.pdb Error: no new SCWRL conformation added # naming current conformation karypis.srv.2_TS5-scwrl # ReadConformPDB reading from PDB file servers/karypis.srv.4_TS1.pdb.gz looking for model 1 # Found a chain break before 226 # copying to AlignedFragments data structure # naming current conformation karypis.srv.4_TS1 # request to SCWRL produces command: ulimit -t 207 ; scwrl -i /var/tmp/to_scwrl_643506736.pdb -s /var/tmp/to_scwrl_643506736.seq -o /var/tmp/from_scwrl_643506736.pdb > /var/tmp/scwrl_643506736.log Error: can't open any of /var/tmp/from_scwrl_643506736.pdb or /var/tmp/from_scwrl_643506736_b.pdb or /var/tmp/from_scwrl_643506736_a.pdb Error: no new SCWRL conformation added # naming current conformation karypis.srv.4_TS1-scwrl # ReadConformPDB reading from PDB file servers/karypis.srv.4_TS2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0344 can't currently be optimized by undertaker # copying to AlignedFragments data structure # naming current conformation karypis.srv.4_TS2 # request to SCWRL produces command: ulimit -t 207 ; scwrl -i /var/tmp/to_scwrl_1270773616.pdb -s /var/tmp/to_scwrl_1270773616.seq -o /var/tmp/from_scwrl_1270773616.pdb > /var/tmp/scwrl_1270773616.log Error: can't open any of /var/tmp/from_scwrl_1270773616.pdb or /var/tmp/from_scwrl_1270773616_b.pdb or /var/tmp/from_scwrl_1270773616_a.pdb Error: no new SCWRL conformation added # naming current conformation karypis.srv.4_TS2-scwrl # ReadConformPDB reading from PDB file servers/karypis.srv.4_TS3.pdb.gz looking for model 1 # Found a chain break before 226 # copying to AlignedFragments data structure # naming current conformation karypis.srv.4_TS3 # request to SCWRL produces command: ulimit -t 207 ; scwrl -i /var/tmp/to_scwrl_1518291842.pdb -s /var/tmp/to_scwrl_1518291842.seq -o /var/tmp/from_scwrl_1518291842.pdb > /var/tmp/scwrl_1518291842.log Error: can't open any of /var/tmp/from_scwrl_1518291842.pdb or /var/tmp/from_scwrl_1518291842_b.pdb or /var/tmp/from_scwrl_1518291842_a.pdb Error: no new SCWRL conformation added # naming current conformation karypis.srv.4_TS3-scwrl # ReadConformPDB reading from PDB file servers/karypis.srv.4_TS4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0344 can't currently be optimized by undertaker # copying to AlignedFragments data structure # naming current conformation karypis.srv.4_TS4 # request to SCWRL produces command: ulimit -t 207 ; scwrl -i /var/tmp/to_scwrl_962737384.pdb -s /var/tmp/to_scwrl_962737384.seq -o /var/tmp/from_scwrl_962737384.pdb > /var/tmp/scwrl_962737384.log Error: can't open any of /var/tmp/from_scwrl_962737384.pdb or /var/tmp/from_scwrl_962737384_b.pdb or /var/tmp/from_scwrl_962737384_a.pdb Error: no new SCWRL conformation added # naming current conformation karypis.srv.4_TS4-scwrl # ReadConformPDB reading from PDB file servers/karypis.srv.4_TS5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0344 can't currently be optimized by undertaker # copying to AlignedFragments data structure # naming current conformation karypis.srv.4_TS5 # request to SCWRL produces command: ulimit -t 207 ; scwrl -i /var/tmp/to_scwrl_658904922.pdb -s /var/tmp/to_scwrl_658904922.seq -o /var/tmp/from_scwrl_658904922.pdb > /var/tmp/scwrl_658904922.log Error: can't open any of /var/tmp/from_scwrl_658904922.pdb or /var/tmp/from_scwrl_658904922_b.pdb or /var/tmp/from_scwrl_658904922_a.pdb Error: no new SCWRL conformation added # naming current conformation karypis.srv.4_TS5-scwrl # ReadConformPDB reading from PDB file servers/karypis.srv_TS1.pdb.gz looking for model 1 # Found a chain break before 196 # copying to AlignedFragments data structure # naming current conformation karypis.srv_TS1 # request to SCWRL produces command: ulimit -t 207 ; scwrl -i /var/tmp/to_scwrl_110674125.pdb -s /var/tmp/to_scwrl_110674125.seq -o /var/tmp/from_scwrl_110674125.pdb > /var/tmp/scwrl_110674125.log Error: can't open any of /var/tmp/from_scwrl_110674125.pdb or /var/tmp/from_scwrl_110674125_b.pdb or /var/tmp/from_scwrl_110674125_a.pdb Error: no new SCWRL conformation added # naming current conformation karypis.srv_TS1-scwrl # ReadConformPDB reading from PDB file servers/karypis.srv_TS2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0344 can't currently be optimized by undertaker # copying to AlignedFragments data structure # naming current conformation karypis.srv_TS2 # request to SCWRL produces command: ulimit -t 207 ; scwrl -i /var/tmp/to_scwrl_745587733.pdb -s /var/tmp/to_scwrl_745587733.seq -o /var/tmp/from_scwrl_745587733.pdb > /var/tmp/scwrl_745587733.log Error: can't open any of /var/tmp/from_scwrl_745587733.pdb or /var/tmp/from_scwrl_745587733_b.pdb or /var/tmp/from_scwrl_745587733_a.pdb Error: no new SCWRL conformation added # naming current conformation karypis.srv_TS2-scwrl # ReadConformPDB reading from PDB file servers/karypis.srv_TS3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0344 can't currently be optimized by undertaker # naming current conformation karypis.srv_TS3 # request to SCWRL produces command: ulimit -t 207 ; scwrl -i /var/tmp/to_scwrl_607844801.pdb -s /var/tmp/to_scwrl_607844801.seq -o /var/tmp/from_scwrl_607844801.pdb > /var/tmp/scwrl_607844801.log Error: can't open any of /var/tmp/from_scwrl_607844801.pdb or /var/tmp/from_scwrl_607844801_b.pdb or /var/tmp/from_scwrl_607844801_a.pdb Error: no new SCWRL conformation added # naming current conformation karypis.srv_TS3-scwrl # ReadConformPDB reading from PDB file servers/karypis.srv_TS4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0344 can't currently be optimized by undertaker # naming current conformation karypis.srv_TS4 # request to SCWRL produces command: ulimit -t 207 ; scwrl -i /var/tmp/to_scwrl_1509553741.pdb -s /var/tmp/to_scwrl_1509553741.seq -o /var/tmp/from_scwrl_1509553741.pdb > /var/tmp/scwrl_1509553741.log Error: can't open any of /var/tmp/from_scwrl_1509553741.pdb or /var/tmp/from_scwrl_1509553741_b.pdb or /var/tmp/from_scwrl_1509553741_a.pdb Error: no new SCWRL conformation added # naming current conformation karypis.srv_TS4-scwrl # ReadConformPDB reading from PDB file servers/karypis.srv_TS5.pdb.gz looking for model 1 # Found a chain break before 221 # copying to AlignedFragments data structure # naming current conformation karypis.srv_TS5 # request to SCWRL produces command: ulimit -t 207 ; scwrl -i /var/tmp/to_scwrl_1380332354.pdb -s /var/tmp/to_scwrl_1380332354.seq -o /var/tmp/from_scwrl_1380332354.pdb > /var/tmp/scwrl_1380332354.log Error: can't open any of /var/tmp/from_scwrl_1380332354.pdb or /var/tmp/from_scwrl_1380332354_b.pdb or /var/tmp/from_scwrl_1380332354_a.pdb Error: no new SCWRL conformation added # naming current conformation karypis.srv_TS5-scwrl # ReadConformPDB reading from PDB file servers/keasar-server_TS1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0344 can't currently be optimized by undertaker # naming current conformation keasar-server_TS1 # request to SCWRL produces command: ulimit -t 207 ; scwrl -i /var/tmp/to_scwrl_1542088938.pdb -s /var/tmp/to_scwrl_1542088938.seq -o /var/tmp/from_scwrl_1542088938.pdb > /var/tmp/scwrl_1542088938.log Error: can't open any of /var/tmp/from_scwrl_1542088938.pdb or /var/tmp/from_scwrl_1542088938_b.pdb or /var/tmp/from_scwrl_1542088938_a.pdb Error: no new SCWRL conformation added # naming current conformation keasar-server_TS1-scwrl # ReadConformPDB reading from PDB file servers/keasar-server_TS2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0344 can't currently be optimized by undertaker # naming current conformation keasar-server_TS2 # request to SCWRL produces command: ulimit -t 207 ; scwrl -i /var/tmp/to_scwrl_1783243741.pdb -s /var/tmp/to_scwrl_1783243741.seq -o /var/tmp/from_scwrl_1783243741.pdb > /var/tmp/scwrl_1783243741.log Error: can't open any of /var/tmp/from_scwrl_1783243741.pdb or /var/tmp/from_scwrl_1783243741_b.pdb or /var/tmp/from_scwrl_1783243741_a.pdb Error: no new SCWRL conformation added # naming current conformation keasar-server_TS2-scwrl # ReadConformPDB reading from PDB file servers/keasar-server_TS3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0344 can't currently be optimized by undertaker # naming current conformation keasar-server_TS3 # request to SCWRL produces command: ulimit -t 207 ; scwrl -i /var/tmp/to_scwrl_29012358.pdb -s /var/tmp/to_scwrl_29012358.seq -o /var/tmp/from_scwrl_29012358.pdb > /var/tmp/scwrl_29012358.log Error: can't open any of /var/tmp/from_scwrl_29012358.pdb or /var/tmp/from_scwrl_29012358_b.pdb or /var/tmp/from_scwrl_29012358_a.pdb Error: no new SCWRL conformation added # naming current conformation keasar-server_TS3-scwrl # ReadConformPDB reading from PDB file servers/keasar-server_TS4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0344 can't currently be optimized by undertaker # naming current conformation keasar-server_TS4 # request to SCWRL produces command: ulimit -t 207 ; scwrl -i /var/tmp/to_scwrl_1118225767.pdb -s /var/tmp/to_scwrl_1118225767.seq -o /var/tmp/from_scwrl_1118225767.pdb > /var/tmp/scwrl_1118225767.log Error: can't open any of /var/tmp/from_scwrl_1118225767.pdb or /var/tmp/from_scwrl_1118225767_b.pdb or /var/tmp/from_scwrl_1118225767_a.pdb Error: no new SCWRL conformation added # naming current conformation keasar-server_TS4-scwrl # ReadConformPDB reading from PDB file servers/keasar-server_TS5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0344 can't currently be optimized by undertaker # naming current conformation keasar-server_TS5 # request to SCWRL produces command: ulimit -t 207 ; scwrl -i /var/tmp/to_scwrl_498450762.pdb -s /var/tmp/to_scwrl_498450762.seq -o /var/tmp/from_scwrl_498450762.pdb > /var/tmp/scwrl_498450762.log Error: can't open any of /var/tmp/from_scwrl_498450762.pdb or /var/tmp/from_scwrl_498450762_b.pdb or /var/tmp/from_scwrl_498450762_a.pdb Error: no new SCWRL conformation added # naming current conformation keasar-server_TS5-scwrl # ReadConformPDB reading from PDB file servers/mGen-3D_TS1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0344 can't currently be optimized by undertaker # naming current conformation mGen-3D_TS1 # request to SCWRL produces command: ulimit -t 207 ; scwrl -i /var/tmp/to_scwrl_281768621.pdb -s /var/tmp/to_scwrl_281768621.seq -o /var/tmp/from_scwrl_281768621.pdb > /var/tmp/scwrl_281768621.log Error: can't open any of /var/tmp/from_scwrl_281768621.pdb or /var/tmp/from_scwrl_281768621_b.pdb or /var/tmp/from_scwrl_281768621_a.pdb Error: no new SCWRL conformation added # naming current conformation mGen-3D_TS1-scwrl # ReadConformPDB reading from PDB file servers/nFOLD_TS1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0344 can't currently be optimized by undertaker # naming current conformation nFOLD_TS1 # request to SCWRL produces command: ulimit -t 207 ; scwrl -i /var/tmp/to_scwrl_479300738.pdb -s /var/tmp/to_scwrl_479300738.seq -o /var/tmp/from_scwrl_479300738.pdb > /var/tmp/scwrl_479300738.log Error: can't open any of /var/tmp/from_scwrl_479300738.pdb or /var/tmp/from_scwrl_479300738_b.pdb or /var/tmp/from_scwrl_479300738_a.pdb Error: no new SCWRL conformation added # naming current conformation nFOLD_TS1-scwrl # ReadConformPDB reading from PDB file servers/nFOLD_TS2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0344 can't currently be optimized by undertaker # naming current conformation nFOLD_TS2 # request to SCWRL produces command: ulimit -t 207 ; scwrl -i /var/tmp/to_scwrl_1626113519.pdb -s /var/tmp/to_scwrl_1626113519.seq -o /var/tmp/from_scwrl_1626113519.pdb > /var/tmp/scwrl_1626113519.log Error: can't open any of /var/tmp/from_scwrl_1626113519.pdb or /var/tmp/from_scwrl_1626113519_b.pdb or /var/tmp/from_scwrl_1626113519_a.pdb Error: no new SCWRL conformation added # naming current conformation nFOLD_TS2-scwrl # ReadConformPDB reading from PDB file servers/nFOLD_TS3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0344 can't currently be optimized by undertaker # naming current conformation nFOLD_TS3 # request to SCWRL produces command: ulimit -t 207 ; scwrl -i /var/tmp/to_scwrl_1377684046.pdb -s /var/tmp/to_scwrl_1377684046.seq -o /var/tmp/from_scwrl_1377684046.pdb > /var/tmp/scwrl_1377684046.log Error: can't open any of /var/tmp/from_scwrl_1377684046.pdb or /var/tmp/from_scwrl_1377684046_b.pdb or /var/tmp/from_scwrl_1377684046_a.pdb Error: no new SCWRL conformation added # naming current conformation nFOLD_TS3-scwrl # ReadConformPDB reading from PDB file servers/nFOLD_TS4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0344 can't currently be optimized by undertaker # naming current conformation nFOLD_TS4 # request to SCWRL produces command: ulimit -t 207 ; scwrl -i /var/tmp/to_scwrl_1593220168.pdb -s /var/tmp/to_scwrl_1593220168.seq -o /var/tmp/from_scwrl_1593220168.pdb > /var/tmp/scwrl_1593220168.log Error: can't open any of /var/tmp/from_scwrl_1593220168.pdb or /var/tmp/from_scwrl_1593220168_b.pdb or /var/tmp/from_scwrl_1593220168_a.pdb Error: no new SCWRL conformation added # naming current conformation nFOLD_TS4-scwrl # ReadConformPDB reading from PDB file servers/nFOLD_TS5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0344 can't currently be optimized by undertaker # naming current conformation nFOLD_TS5 # request to SCWRL produces command: ulimit -t 207 ; scwrl -i /var/tmp/to_scwrl_837120938.pdb -s /var/tmp/to_scwrl_837120938.seq -o /var/tmp/from_scwrl_837120938.pdb > /var/tmp/scwrl_837120938.log Error: can't open any of /var/tmp/from_scwrl_837120938.pdb or /var/tmp/from_scwrl_837120938_b.pdb or /var/tmp/from_scwrl_837120938_a.pdb Error: no new SCWRL conformation added # naming current conformation nFOLD_TS5-scwrl # ReadConformPDB reading from PDB file servers/panther2_TS1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0344 can't currently be optimized by undertaker # naming current conformation panther2_TS1 # request to SCWRL produces command: ulimit -t 207 ; scwrl -i /var/tmp/to_scwrl_2096550813.pdb -s /var/tmp/to_scwrl_2096550813.seq -o /var/tmp/from_scwrl_2096550813.pdb > /var/tmp/scwrl_2096550813.log Error: can't open any of /var/tmp/from_scwrl_2096550813.pdb or /var/tmp/from_scwrl_2096550813_b.pdb or /var/tmp/from_scwrl_2096550813_a.pdb Error: no new SCWRL conformation added # naming current conformation panther2_TS1-scwrl # ReadConformPDB reading from PDB file servers/shub_TS1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0344 can't currently be optimized by undertaker # naming current conformation shub_TS1 # request to SCWRL produces command: ulimit -t 207 ; scwrl -i /var/tmp/to_scwrl_784290328.pdb -s /var/tmp/to_scwrl_784290328.seq -o /var/tmp/from_scwrl_784290328.pdb > /var/tmp/scwrl_784290328.log Error: can't open any of /var/tmp/from_scwrl_784290328.pdb or /var/tmp/from_scwrl_784290328_b.pdb or /var/tmp/from_scwrl_784290328_a.pdb Error: no new SCWRL conformation added # naming current conformation shub_TS1-scwrl # command:CPU_time= 71.4661 sec, elapsed time= 88.7602 sec) # command:# Prefix for output files set to decoys/ # command:# Will now start reporting costs to decoys/evaluate.predburial.rdb # command:# CostConform shub_TS1-scwrl costs 491.344 real_cost = 400.22 panther2_TS1-scwrl costs 1644.43 real_cost = 629.459 nFOLD_TS5-scwrl costs 48496.7 real_cost = 585.683 nFOLD_TS4-scwrl costs 27792.7 real_cost = 592.269 nFOLD_TS3-scwrl costs 8909.68 real_cost = 564.646 nFOLD_TS2-scwrl costs 5162.29 real_cost = 562.421 nFOLD_TS1-scwrl costs 8047.46 real_cost = 545.251 mGen-3D_TS1-scwrl costs 7201.38 real_cost = 525.72 keasar-server_TS5-scwrl costs 516.087 real_cost = 424.479 keasar-server_TS4-scwrl costs 502.174 real_cost = 422.64 keasar-server_TS3-scwrl costs 476.478 real_cost = 399.933 keasar-server_TS2-scwrl costs 515.209 real_cost = 431.436 keasar-server_TS1-scwrl costs 475.074 real_cost = 414.163 karypis.srv_TS5-scwrl costs 362.377 real_cost = 371.002 karypis.srv_TS4-scwrl costs 641.777 real_cost = 418.704 karypis.srv_TS3-scwrl costs 503.255 real_cost = 407.726 karypis.srv_TS2-scwrl costs 420.423 real_cost = 388.724 karypis.srv_TS1-scwrl costs 357.194 real_cost = 393.641 karypis.srv.4_TS5-scwrl costs 445.692 real_cost = 403.245 karypis.srv.4_TS4-scwrl costs 425.403 real_cost = 396.295 karypis.srv.4_TS3-scwrl costs 401.117 real_cost = 381.852 karypis.srv.4_TS2-scwrl costs 436.141 real_cost = 393.68 karypis.srv.4_TS1-scwrl costs 443.494 real_cost = 403.701 karypis.srv.2_TS5-scwrl costs 333.317 real_cost = 366.163 karypis.srv.2_TS4-scwrl costs 356.963 real_cost = 370.538 karypis.srv.2_TS3-scwrl costs 357.082 real_cost = 393.097 karypis.srv.2_TS2-scwrl costs 363.861 real_cost = 385.703 karypis.srv.2_TS1-scwrl costs 381.131 real_cost = 370.519 forecast-s_AL5-scwrl costs 19113.2 real_cost = 647.352 forecast-s_AL4-scwrl costs 55213.8 real_cost = 676.91 forecast-s_AL3-scwrl costs 18517.4 real_cost = 650.914 forecast-s_AL2-scwrl costs 19346.1 real_cost = 672.144 forecast-s_AL1-scwrl costs 31738.4 real_cost = 677.938 beautshotbase_TS1-scwrl costs 689.705 real_cost = 421.476 beautshot_TS1-scwrl costs 513.059 real_cost = 393.461 Zhang-Server_TS5-scwrl costs 421.68 real_cost = 377.28 Zhang-Server_TS4-scwrl costs 354.737 real_cost = 362.568 Zhang-Server_TS3-scwrl costs 363.766 real_cost = 361.314 Zhang-Server_TS2-scwrl costs 364.847 real_cost = 375.935 Zhang-Server_TS1-scwrl costs 364.592 real_cost = 373.715 UNI-EID_sfst_AL5-scwrl costs 399398 real_cost = 599.08 UNI-EID_sfst_AL4-scwrl costs 33766.9 real_cost = 621.869 UNI-EID_sfst_AL3-scwrl costs 32152.9 real_cost = 618.566 UNI-EID_sfst_AL2-scwrl costs 26924.9 real_cost = 593.356 UNI-EID_sfst_AL1-scwrl costs 38207.2 real_cost = 623.82 UNI-EID_expm_TS1-scwrl costs 7657.03 real_cost = 554.253 UNI-EID_bnmx_TS5-scwrl costs 453734 real_cost = 599.089 UNI-EID_bnmx_TS4-scwrl costs 49075 real_cost = 561.197 UNI-EID_bnmx_TS3-scwrl costs 37933.1 real_cost = 599.347 UNI-EID_bnmx_TS2-scwrl costs 31926.3 real_cost = 582.491 UNI-EID_bnmx_TS1-scwrl costs 43822.8 real_cost = 615.073 SPARKS2_TS5-scwrl costs 342.999 real_cost = 379.018 SPARKS2_TS4-scwrl costs 349.802 real_cost = 384.206 SPARKS2_TS3-scwrl costs 321.978 real_cost = 334.014 SPARKS2_TS2-scwrl costs 347.185 real_cost = 380.49 SPARKS2_TS1-scwrl costs 329.719 real_cost = 357.729 SP4_TS5-scwrl costs 349.933 real_cost = 379.016 SP4_TS4-scwrl costs 319.561 real_cost = 372.421 SP4_TS3-scwrl costs 329.009 real_cost = 356.172 SP4_TS2-scwrl costs 342.625 real_cost = 380.425 SP4_TS1-scwrl costs 322.005 real_cost = 361.441 SP3_TS5-scwrl costs 333.616 real_cost = 384.865 SP3_TS4-scwrl costs 321.712 real_cost = 362.31 SP3_TS3-scwrl costs 335.828 real_cost = 360.236 SP3_TS2-scwrl costs 357.764 real_cost = 365.508 SP3_TS1-scwrl costs 337.475 real_cost = 361.325 SAM_T06_server_TS5-scwrl costs 1128.37 real_cost = 531.934 SAM_T06_server_TS4-scwrl costs 1242.39 real_cost = 534.027 SAM_T06_server_TS3-scwrl costs 1026.56 real_cost = 468.905 SAM_T06_server_TS2-scwrl costs 1417.67 real_cost = 563.762 SAM_T06_server_TS1-scwrl costs 281.869 real_cost = 347.799 SAM-T99_AL1-scwrl costs 78008.1 real_cost = 591.272 SAM-T02_AL5-scwrl costs 5237.11 real_cost = 644.397 SAM-T02_AL4-scwrl costs 4401.66 real_cost = 625.402 SAM-T02_AL3-scwrl costs 5224.34 real_cost = 644.528 SAM-T02_AL2-scwrl costs 4451.49 real_cost = 695.847 SAM-T02_AL1-scwrl costs 12936.1 real_cost = 616.056 ROKKY_TS5-scwrl costs 7362.05 real_cost = 487.304 ROKKY_TS4-scwrl costs 4433.9 real_cost = 489.757 ROKKY_TS3-scwrl costs 6359.74 real_cost = 497.196 ROKKY_TS2-scwrl costs 4339.31 real_cost = 507.098 ROKKY_TS1-scwrl costs 5790.6 real_cost = 499.381 ROBETTA_TS5-scwrl costs 301.85 real_cost = 363.26 ROBETTA_TS4-scwrl costs 282.75 real_cost = 354.911 ROBETTA_TS3-scwrl costs 294.596 real_cost = 371.156 ROBETTA_TS2-scwrl costs 284.883 real_cost = 366.905 ROBETTA_TS1-scwrl costs 292.584 real_cost = 371.627 RAPTOR_TS5-scwrl costs 355.164 real_cost = 379.819 RAPTOR_TS4-scwrl costs 338.845 real_cost = 387.088 RAPTOR_TS3-scwrl costs 358.175 real_cost = 359.574 RAPTOR_TS2-scwrl costs 332.659 real_cost = 355.981 RAPTOR_TS1-scwrl costs 317.382 real_cost = 367.375 RAPTORESS_TS5-scwrl costs 331.418 real_cost = 386.355 RAPTORESS_TS4-scwrl costs 331.82 real_cost = 388.671 RAPTORESS_TS3-scwrl costs 325.091 real_cost = 361.15 RAPTORESS_TS2-scwrl costs 330.861 real_cost = 357.013 RAPTORESS_TS1-scwrl costs 307.976 real_cost = 365.914 RAPTOR-ACE_TS5-scwrl costs 790.357 real_cost = 375.155 RAPTOR-ACE_TS4-scwrl costs 349.836 real_cost = 383.388 RAPTOR-ACE_TS3-scwrl costs 357.764 real_cost = 365.508 RAPTOR-ACE_TS2-scwrl costs 337.475 real_cost = 361.325 RAPTOR-ACE_TS1-scwrl costs 335.828 real_cost = 360.236 Pmodeller6_TS5-scwrl costs 277.83 real_cost = 354.094 Pmodeller6_TS4-scwrl costs 284.883 real_cost = 366.905 Pmodeller6_TS3-scwrl costs 285.717 real_cost = 350.079 Pmodeller6_TS2-scwrl costs 284.502 real_cost = 360.66 Pmodeller6_TS1-scwrl costs 301.85 real_cost = 363.26 Phyre-2_TS5-scwrl costs 409.219 real_cost = 347.243 Phyre-2_TS4-scwrl costs 408.506 real_cost = 361.227 Phyre-2_TS3-scwrl costs 403.432 real_cost = 360.718 Phyre-2_TS2-scwrl costs 406.106 real_cost = 356.563 Phyre-2_TS1-scwrl costs 405.303 real_cost = 362.864 Phyre-1_TS1-scwrl costs 964.802 real_cost = 498.034 Pcons6_TS5-scwrl costs 646.407 real_cost = 426.062 Pcons6_TS4-scwrl costs 645.988 real_cost = 430.381 Pcons6_TS3-scwrl costs 277.83 real_cost = 354.094 Pcons6_TS2-scwrl costs 377.401 real_cost = 354.148 Pcons6_TS1-scwrl costs 361.924 real_cost = 354.956 PROTINFO_TS5-scwrl costs 336.99 real_cost = 387.868 PROTINFO_TS4-scwrl costs 342.301 real_cost = 387.18 PROTINFO_TS3-scwrl costs 359.443 real_cost = 387.953 PROTINFO_TS2-scwrl costs 319.675 real_cost = 369.87 PROTINFO_TS1-scwrl costs 344.687 real_cost = 368.798 PROTINFO-AB_TS5-scwrl costs 348.55 real_cost = 392.978 PROTINFO-AB_TS4-scwrl costs 352.468 real_cost = 389.958 PROTINFO-AB_TS3-scwrl costs 345.834 real_cost = 399.658 PROTINFO-AB_TS2-scwrl costs 341.535 real_cost = 397.02 PROTINFO-AB_TS1-scwrl costs 348.55 real_cost = 392.978 POMYSL_TS5-scwrl costs 485.295 real_cost = 401.455 POMYSL_TS4-scwrl costs 552.458 real_cost = 399.309 POMYSL_TS3-scwrl costs 399.638 real_cost = 401.738 POMYSL_TS2-scwrl costs 914.845 real_cost = 471.076 POMYSL_TS1-scwrl costs 425.449 real_cost = 376.936 NN_PUT_lab_TS1-scwrl costs 8047.46 real_cost = 545.251 MetaTasser_TS5-scwrl costs 460.886 real_cost = 365.042 MetaTasser_TS4-scwrl costs 463.227 real_cost = 363.175 MetaTasser_TS3-scwrl costs 463.56 real_cost = 370.108 MetaTasser_TS2-scwrl costs 450.799 real_cost = 376.885 MetaTasser_TS1-scwrl costs 446.502 real_cost = 366.179 Ma-OPUS-server_TS5-scwrl costs 372.478 real_cost = 391.219 Ma-OPUS-server_TS4-scwrl costs 334.157 real_cost = 374.766 Ma-OPUS-server_TS3-scwrl costs 335.666 real_cost = 364.31 Ma-OPUS-server_TS2-scwrl costs 368.551 real_cost = 375.225 Ma-OPUS-server_TS1-scwrl costs 325.234 real_cost = 368.908 Ma-OPUS-server2_TS5-scwrl costs 337.392 real_cost = 390.563 Ma-OPUS-server2_TS4-scwrl costs 337.867 real_cost = 370.222 Ma-OPUS-server2_TS3-scwrl costs 352.849 real_cost = 365.764 Ma-OPUS-server2_TS2-scwrl costs 340.186 real_cost = 352.951 Ma-OPUS-server2_TS1-scwrl costs 334.645 real_cost = 376.168 LOOPP_TS5-scwrl costs 374.893 real_cost = 373.278 LOOPP_TS4-scwrl costs 355.335 real_cost = 397.838 LOOPP_TS3-scwrl costs 473.107 real_cost = 407.686 LOOPP_TS2-scwrl costs 542.783 real_cost = 400.992 LOOPP_TS1-scwrl costs 474.95 real_cost = 408.461 Huber-Torda-Server_TS5-scwrl costs 24960.9 real_cost = 554.313 Huber-Torda-Server_TS4-scwrl costs 22448 real_cost = 578.002 Huber-Torda-Server_TS3-scwrl costs 9397.54 real_cost = 582.025 Huber-Torda-Server_TS2-scwrl costs 24085.7 real_cost = 551.691 Huber-Torda-Server_TS1-scwrl costs 4617.64 real_cost = 521.056 HHpred3_TS1-scwrl costs 337.409 real_cost = 366.102 HHpred2_TS1-scwrl costs 337.409 real_cost = 366.102 HHpred1_TS1-scwrl costs 1211.86 real_cost = 574.442 GeneSilicoMetaServer_TS5-scwrl costs 318.285 real_cost = 381.729 GeneSilicoMetaServer_TS4-scwrl costs 354.648 real_cost = 384.408 GeneSilicoMetaServer_TS3-scwrl costs 356.745 real_cost = 365.899 GeneSilicoMetaServer_TS2-scwrl costs 353.23 real_cost = 368.92 GeneSilicoMetaServer_TS1-scwrl costs 342.165 real_cost = 372.075 FUNCTION_TS5-scwrl costs 421.19 real_cost = 335.14 FUNCTION_TS4-scwrl costs 485.46 real_cost = 405.813 FUNCTION_TS3-scwrl costs 388.833 real_cost = 375.303 FUNCTION_TS2-scwrl costs 391.187 real_cost = 371.465 FUNCTION_TS1-scwrl costs 363.847 real_cost = 359.338 FUGUE_AL5-scwrl costs 2355.85 real_cost = 677.403 FUGUE_AL4-scwrl costs 10965.5 real_cost = 596.148 FUGUE_AL3-scwrl costs 258786 real_cost = 611.157 FUGUE_AL2-scwrl costs 13369.6 real_cost = 630.04 FUGUE_AL1-scwrl costs 61048.2 real_cost = 547.602 FUGMOD_TS5-scwrl costs 1745.73 real_cost = 638.646 FUGMOD_TS4-scwrl costs 380.901 real_cost = 358.269 FUGMOD_TS3-scwrl costs 494.539 real_cost = 393.147 FUGMOD_TS2-scwrl costs 1287.23 real_cost = 535.351 FUGMOD_TS1-scwrl costs 352.635 real_cost = 364.752 FPSOLVER-SERVER_TS5-scwrl costs 359.427 real_cost = 416.755 FPSOLVER-SERVER_TS4-scwrl costs 358.798 real_cost = 413.757 FPSOLVER-SERVER_TS3-scwrl costs 351.906 real_cost = 373.123 FPSOLVER-SERVER_TS2-scwrl costs 361.079 real_cost = 395.108 FPSOLVER-SERVER_TS1-scwrl costs 366.68 real_cost = 407.26 FORTE2_AL5-scwrl costs 199372 real_cost = 569.219 FORTE2_AL4-scwrl costs 42386.5 real_cost = 568.893 FORTE2_AL3-scwrl costs 40797.6 real_cost = 605.848 FORTE2_AL2-scwrl costs 343946 real_cost = 565.746 FORTE2_AL1-scwrl costs 23282.8 real_cost = 577.218 FORTE1_AL5-scwrl costs 42386.5 real_cost = 568.893 FORTE1_AL4-scwrl costs 40797.6 real_cost = 605.848 FORTE1_AL3-scwrl costs 199336 real_cost = 569.288 FORTE1_AL2-scwrl costs 343946 real_cost = 565.746 FORTE1_AL1-scwrl costs 23282.8 real_cost = 577.218 FOLDpro_TS5-scwrl costs 368.494 real_cost = 365.729 FOLDpro_TS4-scwrl costs 339.586 real_cost = 358.861 FOLDpro_TS3-scwrl costs 330.67 real_cost = 402.493 FOLDpro_TS2-scwrl costs 356.492 real_cost = 372.024 FOLDpro_TS1-scwrl costs 324.064 real_cost = 380.251 FAMS_TS5-scwrl costs 1328.81 real_cost = 542.522 FAMS_TS4-scwrl costs 1362.96 real_cost = 549.036 FAMS_TS3-scwrl costs 350.184 real_cost = 371.512 FAMS_TS2-scwrl costs 1366.84 real_cost = 531.069 FAMS_TS1-scwrl costs 350.986 real_cost = 363.951 FAMSD_TS5-scwrl costs 382.05 real_cost = 355.865 FAMSD_TS4-scwrl costs 1207.43 real_cost = 522.968 FAMSD_TS3-scwrl costs 1362.96 real_cost = 549.036 FAMSD_TS2-scwrl costs 1328.81 real_cost = 542.522 FAMSD_TS1-scwrl costs 362.931 real_cost = 372.563 Distill_TS5-scwrl costs 2826.79 real_cost = 603.531 Distill_TS4-scwrl costs 2824.47 real_cost = 601.437 Distill_TS3-scwrl costs 2821.13 real_cost = 603.579 Distill_TS2-scwrl costs 2823.89 real_cost = 601.768 Distill_TS1-scwrl costs 2823.74 real_cost = 602.386 CaspIta-FOX_TS5-scwrl costs 721.154 real_cost = 422.866 CaspIta-FOX_TS4-scwrl costs 1169.92 real_cost = 507.78 CaspIta-FOX_TS3-scwrl costs 1024.05 real_cost = 481.235 CaspIta-FOX_TS2-scwrl costs 1136.17 real_cost = 554.625 CaspIta-FOX_TS1-scwrl costs 1216.29 real_cost = 427.02 CIRCLE_TS5-scwrl costs 1325.74 real_cost = 559.219 CIRCLE_TS4-scwrl costs 1366.84 real_cost = 531.069 CIRCLE_TS3-scwrl costs 1203.73 real_cost = 496.038 CIRCLE_TS2-scwrl costs 350.986 real_cost = 363.951 CIRCLE_TS1-scwrl costs 350.184 real_cost = 371.512 Bilab-ENABLE_TS3-scwrl costs 394.961 real_cost = 389.092 Bilab-ENABLE_TS2-scwrl costs 333.221 real_cost = 362.354 Bilab-ENABLE_TS1-scwrl costs 312.263 real_cost = 378.212 BayesHH_TS1-scwrl costs 365.422 real_cost = 352.846 ABIpro_TS5-scwrl costs 397.644 real_cost = 361.798 ABIpro_TS4-scwrl costs 389.246 real_cost = 351.112 ABIpro_TS3-scwrl costs 411.797 real_cost = 340.43 ABIpro_TS2-scwrl costs 421.375 real_cost = 355.727 ABIpro_TS1-scwrl costs 414.348 real_cost = 354.347 3Dpro_TS5-scwrl costs 389.608 real_cost = 387.445 3Dpro_TS4-scwrl costs 421.375 real_cost = 355.727 3Dpro_TS3-scwrl costs 414.348 real_cost = 354.347 3Dpro_TS2-scwrl costs 344.135 real_cost = 382.167 3Dpro_TS1-scwrl costs 324.471 real_cost = 377.742 3D-JIGSAW_TS5-scwrl costs 450.957 real_cost = 379.945 3D-JIGSAW_TS4-scwrl costs 832.544 real_cost = 470.815 3D-JIGSAW_TS3-scwrl costs 440.041 real_cost = 368.781 3D-JIGSAW_TS2-scwrl costs 519.972 real_cost = 394.37 3D-JIGSAW_TS1-scwrl costs 439.152 real_cost = 368.098 3D-JIGSAW_RECOM_TS5-scwrl costs 884.52 real_cost = 453.809 3D-JIGSAW_RECOM_TS4-scwrl costs 898.407 real_cost = 460.581 3D-JIGSAW_RECOM_TS3-scwrl costs 675.123 real_cost = 428.583 3D-JIGSAW_RECOM_TS2-scwrl costs 663.485 real_cost = 426.814 3D-JIGSAW_RECOM_TS1-scwrl costs 416.248 real_cost = 376.389 3D-JIGSAW_POPULUS_TS5-scwrl costs 603.12 real_cost = 407.134 3D-JIGSAW_POPULUS_TS4-scwrl costs 606.847 real_cost = 419.049 3D-JIGSAW_POPULUS_TS3-scwrl costs 604.681 real_cost = 423.452 3D-JIGSAW_POPULUS_TS2-scwrl costs 392.594 real_cost = 367.102 3D-JIGSAW_POPULUS_TS1-scwrl costs 607.812 real_cost = 407.142 robetta-model9.pdb.gz costs 314.648 real_cost = 371.657 robetta-model8.pdb.gz costs 284.502 real_cost = 360.66 robetta-model7.pdb.gz costs 296.367 real_cost = 376.585 robetta-model6.pdb.gz costs 277.83 real_cost = 354.094 robetta-model5.pdb.gz costs 301.85 real_cost = 363.26 robetta-model4.pdb.gz costs 282.75 real_cost = 354.911 robetta-model3.pdb.gz costs 294.596 real_cost = 371.156 robetta-model2.pdb.gz costs 284.883 real_cost = 366.905 robetta-model10.pdb.gz costs 285.717 real_cost = 350.079 robetta-model1.pdb.gz costs 292.584 real_cost = 371.627 T0344.try9-opt2.repack-nonPC.pdb.gz costs 272.643 real_cost = 364.118 T0344.try9-opt2.pdb.gz costs 269.634 real_cost = 363.407 T0344.try9-opt2.gromacs0.repack-nonPC.pdb.gz costs 285.506 real_cost = 364.622 T0344.try9-opt2.gromacs0.pdb.gz costs 283.52 real_cost = 364.56 T0344.try9-opt1.pdb.gz costs 278.223 real_cost = 362.979 T0344.try9-opt1-scwrl.pdb.gz costs 283.722 real_cost = 364.366 T0344.try8-opt2.repack-nonPC.pdb.gz costs 260.102 real_cost = 360.148 T0344.try8-opt2.pdb.gz costs 256.977 real_cost = 359.902 T0344.try8-opt2.gromacs0.repack-nonPC.pdb.gz costs 267.148 real_cost = 359.049 T0344.try8-opt2.gromacs0.pdb.gz costs 266.176 real_cost = 359.282 T0344.try8-opt1.pdb.gz costs 265.517 real_cost = 360.223 T0344.try8-opt1-scwrl.pdb.gz costs 266.573 real_cost = 360.019 T0344.try7-opt2.repack-nonPC.pdb.gz costs 275.199 real_cost = 373.092 T0344.try7-opt2.pdb.gz costs 272.419 real_cost = 373.437 T0344.try7-opt2.gromacs0.repack-nonPC.pdb.gz costs 285.714 real_cost = 374.525 T0344.try7-opt2.gromacs0.pdb.gz costs 284.105 real_cost = 372.256 T0344.try7-opt1.pdb.gz costs 278.663 real_cost = 372.352 T0344.try7-opt1-scwrl.pdb.gz costs 283.247 real_cost = 376.487 T0344.try6-opt2.repack-nonPC.pdb.gz costs 265.658 real_cost = 373.665 T0344.try6-opt2.pdb.gz costs 263.479 real_cost = 372.683 T0344.try6-opt2.gromacs0.repack-nonPC.pdb.gz costs 272.011 real_cost = 369.665 T0344.try6-opt2.gromacs0.pdb.gz costs 270.983 real_cost = 370.384 T0344.try6-opt1.pdb.gz costs 268.374 real_cost = 370.485 T0344.try6-opt1-scwrl.pdb.gz costs 273.989 real_cost = 367.282 T0344.try5-opt2.repack-nonPC.pdb.gz costs 271.221 real_cost = 365.815 T0344.try5-opt2.pdb.gz costs 267.397 real_cost = 368.73 T0344.try5-opt2.gromacs0.repack-nonPC.pdb.gz costs 284.307 real_cost = 360.495 T0344.try5-opt2.gromacs0.pdb.gz costs 282.144 real_cost = 364.208 T0344.try5-opt1.pdb.gz costs 273.773 real_cost = 368.375 T0344.try5-opt1-scwrl.pdb.gz costs 278.902 real_cost = 368.628 T0344.try4-opt2.repack-nonPC.pdb.gz costs 319.817 real_cost = 344.464 T0344.try4-opt2.pdb.gz costs 321.844 real_cost = 349.741 T0344.try4-opt2.gromacs0.repack-nonPC.pdb.gz costs 344.791 real_cost = 352.148 T0344.try4-opt2.gromacs0.pdb.gz costs 346.568 real_cost = 352.545 T0344.try4-opt1.pdb.gz costs 335.774 real_cost = 349.259 T0344.try4-opt1-scwrl.pdb.gz costs 336.27 real_cost = 348.103 T0344.try37-opt2.repack-nonPC.pdb.gz costs 302.722 real_cost = 358.931 T0344.try37-opt2.pdb.gz costs 301.032 real_cost = 360.398 T0344.try37-opt2.gromacs0.repack-nonPC.pdb.gz costs 327.493 real_cost = 363.009 T0344.try37-opt2.gromacs0.pdb.gz costs 328.014 real_cost = 364.265 T0344.try37-opt1.pdb.gz costs 316.828 real_cost = 367.689 T0344.try37-opt1-scwrl.pdb.gz costs 317.316 real_cost = 367.099 T0344.try36-opt2.repack-nonPC.pdb.gz costs 267.146 real_cost = 370.557 T0344.try36-opt2.pdb.gz costs 264.094 real_cost = 369.253 T0344.try36-opt2.gromacs0.repack-nonPC.pdb.gz costs 288.779 real_cost = 371.127 T0344.try36-opt2.gromacs0.pdb.gz costs 286.814 real_cost = 368.972 T0344.try36-opt1.pdb.gz costs 267.364 real_cost = 368.87 T0344.try36-opt1-scwrl.pdb.gz costs 274.632 real_cost = 373.999 T0344.try35-opt2.repack-nonPC.pdb.gz costs 320.134 real_cost = 364.128 T0344.try35-opt2.pdb.gz costs 318.523 real_cost = 361.622 T0344.try35-opt2.gromacs0.repack-nonPC.pdb.gz costs 332.026 real_cost = 355.139 T0344.try35-opt2.gromacs0.pdb.gz costs 331.268 real_cost = 357.961 T0344.try35-opt1.pdb.gz costs 327.632 real_cost = 362.915 T0344.try35-opt1-scwrl.pdb.gz costs 328.487 real_cost = 362.17 T0344.try34-opt2.repack-nonPC.pdb.gz costs 270.155 real_cost = 369.009 T0344.try34-opt2.pdb.gz costs 267.546 real_cost = 367.575 T0344.try34-opt2.gromacs0.repack-nonPC.pdb.gz costs 291.722 real_cost = 374.805 T0344.try34-opt2.gromacs0.pdb.gz costs 290.324 real_cost = 367.576 T0344.try34-opt1.pdb.gz costs 270.335 real_cost = 368.174 T0344.try34-opt1-scwrl.pdb.gz costs 275.329 real_cost = 373.079 T0344.try33-opt2.repack-nonPC.pdb.gz costs 305.169 real_cost = 386.551 T0344.try33-opt2.pdb.gz costs 302.709 real_cost = 386.322 T0344.try33-opt2.gromacs0.repack-nonPC.pdb.gz costs 348.546 real_cost = 382.779 T0344.try33-opt2.gromacs0.pdb.gz costs 347.906 real_cost = 382.453 T0344.try33-opt1.pdb.gz costs 313.438 real_cost = 380.769 T0344.try33-opt1-scwrl.pdb.gz costs 318.021 real_cost = 380.627 T0344.try32-opt2.repack-nonPC.pdb.gz costs 291.033 real_cost = 392.087 T0344.try32-opt2.pdb.gz costs 289.894 real_cost = 391.977 T0344.try32-opt2.gromacs0.repack-nonPC.pdb.gz costs 327.532 real_cost = 392.165 T0344.try32-opt2.gromacs0.pdb.gz costs 327.178 real_cost = 392.268 T0344.try32-opt1.pdb.gz costs 313.987 real_cost = 390.55 T0344.try32-opt1-scwrl.pdb.gz costs 316.64 real_cost = 390.568 T0344.try31-opt2.repack-nonPC.pdb.gz costs 291.631 real_cost = 361.132 T0344.try31-opt2.pdb.gz costs 292.235 real_cost = 357.058 T0344.try31-opt2.gromacs0.repack-nonPC.pdb.gz costs 306.634 real_cost = 360.2 T0344.try31-opt2.gromacs0.pdb.gz costs 305.62 real_cost = 354.922 T0344.try31-opt1.pdb.gz costs 304.455 real_cost = 351.645 T0344.try31-opt1-scwrl.pdb.gz costs 306.059 real_cost = 356.471 T0344.try30-opt2.repack-nonPC.pdb.gz costs 262.909 real_cost = 359.776 T0344.try30-opt2.pdb.gz costs 259.483 real_cost = 360.142 T0344.try30-opt2.gromacs0.repack-nonPC.pdb.gz costs 274.555 real_cost = 361.793 T0344.try30-opt2.gromacs0.pdb.gz costs 272.227 real_cost = 360.847 T0344.try30-opt1.pdb.gz costs 261.038 real_cost = 359.415 T0344.try30-opt1-scwrl.pdb.gz costs 266.835 real_cost = 360.603 T0344.try3-opt2.repack-nonPC.pdb.gz costs 277.724 real_cost = 353.547 T0344.try3-opt2.pdb.gz costs 277.318 real_cost = 353.264 T0344.try3-opt2.gromacs0.repack-nonPC.pdb.gz costs 297.292 real_cost = 355.038 T0344.try3-opt2.gromacs0.pdb.gz costs 298.761 real_cost = 358.359 T0344.try3-opt1.pdb.gz costs 287.743 real_cost = 355.366 T0344.try3-opt1-scwrl.pdb.gz costs 289.053 real_cost = 355.523 T0344.try29-opt2.repack-nonPC.pdb.gz costs 266.18 real_cost = 359.468 T0344.try29-opt2.pdb.gz costs 263.077 real_cost = 359.674 T0344.try29-opt2.gromacs0.repack-nonPC.pdb.gz costs 276.325 real_cost = 358.156 T0344.try29-opt2.gromacs0.pdb.gz costs 274.408 real_cost = 358.419 T0344.try29-opt1.pdb.gz costs 266.247 real_cost = 359.045 T0344.try29-opt1-scwrl.pdb.gz costs 270.572 real_cost = 360.276 T0344.try28-opt2.repack-nonPC.pdb.gz costs 289.107 real_cost = 330.359 T0344.try28-opt2.pdb.gz costs 288.507 real_cost = 328.417 T0344.try28-opt2.gromacs0.repack-nonPC.pdb.gz costs 302.65 real_cost = 328.81 T0344.try28-opt2.gromacs0.pdb.gz costs 302.786 real_cost = 329.682 T0344.try28-opt1.pdb.gz costs 301.154 real_cost = 329.184 T0344.try28-opt1-scwrl.pdb.gz costs 301.592 real_cost = 329.568 T0344.try27-opt2.repack-nonPC.pdb.gz costs 267.086 real_cost = 351.58 T0344.try27-opt2.pdb.gz costs 265.12 real_cost = 351.798 T0344.try27-opt2.gromacs0.repack-nonPC.pdb.gz costs 285.661 real_cost = 352.02 T0344.try27-opt2.gromacs0.pdb.gz costs 284.01 real_cost = 352.382 T0344.try27-opt1.pdb.gz costs 265.756 real_cost = 350.663 T0344.try27-opt1-scwrl.pdb.gz costs 272.262 real_cost = 347.436 T0344.try26-opt2.repack-nonPC.pdb.gz costs 266.45 real_cost = 350.216 T0344.try26-opt2.pdb.gz costs 264.63 real_cost = 350.631 T0344.try26-opt2.gromacs0.repack-nonPC.pdb.gz costs 284.699 real_cost = 351.789 T0344.try26-opt2.gromacs0.pdb.gz costs 283.743 real_cost = 351.354 T0344.try26-opt1.pdb.gz costs 270.395 real_cost = 350.327 T0344.try26-opt1-scwrl.pdb.gz costs 274.093 real_cost = 349.678 T0344.try25-opt2.repack-nonPC.pdb.gz costs 276.884 real_cost = 375.214 T0344.try25-opt2.pdb.gz costs 274.711 real_cost = 373.263 T0344.try25-opt2.gromacs0.repack-nonPC.pdb.gz costs 299.165 real_cost = 377.628 T0344.try25-opt2.gromacs0.pdb.gz costs 297.588 real_cost = 376.392 T0344.try25-opt1.pdb.gz costs 287.131 real_cost = 372.612 T0344.try25-opt1-scwrl.pdb.gz costs 287.782 real_cost = 372.622 T0344.try24-opt2.repack-nonPC.pdb.gz costs 274.867 real_cost = 350.05 T0344.try24-opt2.pdb.gz costs 273.553 real_cost = 350.333 T0344.try24-opt2.gromacs0.repack-nonPC.pdb.gz costs 286.283 real_cost = 351.792 T0344.try24-opt2.gromacs0.pdb.gz costs 285.792 real_cost = 352.139 T0344.try24-opt1.pdb.gz costs 276.742 real_cost = 349.657 T0344.try24-opt1-scwrl.pdb.gz costs 280.807 real_cost = 349.467 T0344.try23-opt2.repack-nonPC.pdb.gz costs 281.319 real_cost = 350.671 T0344.try23-opt2.pdb.gz costs 280.375 real_cost = 350.042 T0344.try23-opt2.gromacs0.repack-nonPC.pdb.gz costs 300.599 real_cost = 350.767 T0344.try23-opt2.gromacs0.pdb.gz costs 301.265 real_cost = 351.089 T0344.try23-opt1.pdb.gz costs 283.588 real_cost = 350.361 T0344.try23-opt1-scwrl.pdb.gz costs 287.108 real_cost = 350.588 T0344.try22-opt2.repack-nonPC.pdb.gz costs 285.46 real_cost = 349.125 T0344.try22-opt2.pdb.gz costs 284.852 real_cost = 349.146 T0344.try22-opt2.gromacs0.repack-nonPC.pdb.gz costs 306.384 real_cost = 351.255 T0344.try22-opt2.gromacs0.pdb.gz costs 306.337 real_cost = 351.532 T0344.try22-opt1.pdb.gz costs 296.445 real_cost = 347.213 T0344.try22-opt1-scwrl.pdb.gz costs 298.498 real_cost = 346.965 T0344.try21-opt2.repack-nonPC.pdb.gz costs 285.803 real_cost = 343.876 T0344.try21-opt2.pdb.gz costs 284.527 real_cost = 341.806 T0344.try21-opt2.gromacs0.repack-nonPC.pdb.gz costs 303.592 real_cost = 345.135 T0344.try21-opt2.gromacs0.pdb.gz costs 303.366 real_cost = 344.94 T0344.try21-opt1.pdb.gz costs 299.827 real_cost = 342.414 T0344.try21-opt1-scwrl.pdb.gz costs 302.461 real_cost = 342.488 T0344.try20-opt2.repack-nonPC.pdb.gz costs 300.605 real_cost = 353.43 T0344.try20-opt2.pdb.gz costs 300.03 real_cost = 353.424 T0344.try20-opt2.gromacs0.repack-nonPC.pdb.gz costs 323.916 real_cost = 358.388 T0344.try20-opt2.gromacs0.pdb.gz costs 324.986 real_cost = 358.374 T0344.try20-opt1.pdb.gz costs 319.831 real_cost = 354.455 T0344.try20-opt1-scwrl.pdb.gz costs 319.967 real_cost = 354.125 T0344.try2-opt2.repack-nonPC.pdb.gz costs 285.427 real_cost = 374.519 T0344.try2-opt2.pdb.gz costs 284.29 real_cost = 374.15 T0344.try2-opt2.gromacs0.repack-nonPC.pdb.gz costs 302.08 real_cost = 375.976 T0344.try2-opt2.gromacs0.pdb.gz costs 301.389 real_cost = 375.648 T0344.try2-opt1.pdb.gz costs 297.166 real_cost = 373.772 T0344.try2-opt1-scwrl.pdb.gz costs 298.741 real_cost = 373.708 T0344.try19-opt2.repack-nonPC.pdb.gz costs 294.493 real_cost = 347.294 T0344.try19-opt2.pdb.gz costs 296.175 real_cost = 346.645 T0344.try19-opt2.gromacs0.repack-nonPC.pdb.gz costs 315.019 real_cost = 347.558 T0344.try19-opt2.gromacs0.pdb.gz costs 316.933 real_cost = 348.013 T0344.try19-opt1.pdb.gz costs 310.259 real_cost = 344.574 T0344.try19-opt1-scwrl.pdb.gz costs 309.677 real_cost = 345.046 T0344.try18-opt2.repack-nonPC.pdb.gz costs 294.357 real_cost = 357.974 T0344.try18-opt2.pdb.gz costs 294.442 real_cost = 360.362 T0344.try18-opt2.gromacs0.repack-nonPC.pdb.gz costs 318.281 real_cost = 361.914 T0344.try18-opt2.gromacs0.pdb.gz costs 318.102 real_cost = 361.546 T0344.try18-opt1.pdb.gz costs 303.334 real_cost = 352.704 T0344.try18-opt1-scwrl.pdb.gz costs 305.708 real_cost = 352.968 T0344.try17-opt2.repack-nonPC.pdb.gz costs 304.729 real_cost = 349.097 T0344.try17-opt2.pdb.gz costs 305.097 real_cost = 348.579 T0344.try17-opt2.gromacs0.repack-nonPC.pdb.gz costs 321.707 real_cost = 344.542 T0344.try17-opt2.gromacs0.pdb.gz costs 322.082 real_cost = 348.146 T0344.try17-opt1.pdb.gz costs 306.481 real_cost = 351.337 T0344.try17-opt1-scwrl.pdb.gz costs 315.187 real_cost = 351.523 T0344.try16-opt2.repack-nonPC.pdb.gz costs 302.963 real_cost = 341.991 T0344.try16-opt2.pdb.gz costs 304.059 real_cost = 343.856 T0344.try16-opt2.gromacs0.repack-nonPC.pdb.gz costs 330.278 real_cost = 351.075 T0344.try16-opt2.gromacs0.pdb.gz costs 330.97 real_cost = 353.174 T0344.try16-opt1.pdb.gz costs 318.177 real_cost = 349.287 T0344.try16-opt1-scwrl.pdb.gz costs 321.983 real_cost = 348.039 T0344.try15-opt2.repack-nonPC.pdb.gz costs 289.143 real_cost = 344.586 T0344.try15-opt2.pdb.gz costs 289.841 real_cost = 345.511 T0344.try15-opt2.gromacs0.repack-nonPC.pdb.gz costs 299.311 real_cost = 343.2 T0344.try15-opt2.gromacs0.pdb.gz costs 298.74 real_cost = 342.157 T0344.try15-opt1.pdb.gz costs 301.483 real_cost = 340.289 T0344.try15-opt1-scwrl.pdb.gz costs 304.083 real_cost = 339.956 T0344.try14-opt2.repack-nonPC.pdb.gz costs 270.481 real_cost = 349.942 T0344.try14-opt2.pdb.gz costs 268.022 real_cost = 349.772 T0344.try14-opt2.gromacs0.repack-nonPC.pdb.gz costs 276.126 real_cost = 341.508 T0344.try14-opt2.gromacs0.pdb.gz costs 273.983 real_cost = 341.487 T0344.try14-opt1.pdb.gz costs 273.677 real_cost = 348.55 T0344.try14-opt1-scwrl.pdb.gz costs 276.056 real_cost = 347.127 T0344.try13-opt2.repack-nonPC.pdb.gz costs 286.114 real_cost = 368.251 T0344.try13-opt2.pdb.gz costs 283.373 real_cost = 367.545 T0344.try13-opt2.gromacs0.repack-nonPC.pdb.gz costs 309.713 real_cost = 366.974 T0344.try13-opt2.gromacs0.pdb.gz costs 308.311 real_cost = 366.687 T0344.try13-opt1.pdb.gz costs 292.346 real_cost = 369.284 T0344.try13-opt1-scwrl.pdb.gz costs 301.978 real_cost = 366.501 T0344.try12-opt2.repack-nonPC.pdb.gz costs 266.414 real_cost = 364.899 T0344.try12-opt2.pdb.gz costs 262.749 real_cost = 364.76 T0344.try12-opt2.gromacs0.repack-nonPC.pdb.gz costs 274.373 real_cost = 366.421 T0344.try12-opt2.gromacs0.pdb.gz costs 271.605 real_cost = 364.36 T0344.try12-opt1.pdb.gz costs 268 real_cost = 361.757 T0344.try12-opt1-scwrl.pdb.gz costs 272.272 real_cost = 360.449 T0344.try11-opt2.repack-nonPC.pdb.gz costs 278.182 real_cost = 375.179 T0344.try11-opt2.pdb.gz costs 276.311 real_cost = 375.696 T0344.try11-opt2.gromacs0.repack-nonPC.pdb.gz costs 292.41 real_cost = 374.943 T0344.try11-opt2.gromacs0.pdb.gz costs 291.916 real_cost = 375.39 T0344.try11-opt1.pdb.gz costs 284.951 real_cost = 375.058 T0344.try11-opt1-scwrl.pdb.gz costs 295.132 real_cost = 373.773 T0344.try10-opt2.repack-nonPC.pdb.gz costs 259.274 real_cost = 347.112 T0344.try10-opt2.pdb.gz costs 256.6 real_cost = 347.262 T0344.try10-opt2.gromacs0.repack-nonPC.pdb.gz costs 264.105 real_cost = 345.824 T0344.try10-opt2.gromacs0.pdb.gz costs 262.78 real_cost = 345.669 T0344.try10-opt1.pdb.gz costs 262.305 real_cost = 346.674 T0344.try10-opt1-scwrl.pdb.gz costs 269.233 real_cost = 346.824 T0344.try1-opt2.repack-nonPC.pdb.gz costs 288.586 real_cost = 337.719 T0344.try1-opt2.pdb.gz costs 286.486 real_cost = 339.438 T0344.try1-opt2.gromacs0.repack-nonPC.pdb.gz costs 309.759 real_cost = 338.522 T0344.try1-opt2.gromacs0.pdb.gz costs 310.149 real_cost = 340.711 T0344.try1-opt1.pdb.gz costs 298.347 real_cost = 343.146 T0344.try1-opt1-scwrl.pdb.gz costs 301.442 real_cost = 343.174 T0344.sub-chimera.pdb.gz costs 744.348 real_cost = 383.518 T0344.model2.pdb.gz costs 305.437 real_cost = 358.4 T0344.model1_renum.pdb.gz costs 348.068 real_cost = 386.926 T0344.chimera.pdb.gz costs 295.086 real_cost = 335.531 ../model5.ts-submitted costs 289.685 real_cost = 392.287 ../model4.ts-submitted costs 276.286 real_cost = 358.231 ../model3.ts-submitted costs 257.009 real_cost = 359.931 ../model2.ts-submitted costs 259.529 real_cost = 360.215 ../model1.ts-submitted costs 264.096 real_cost = 366.896 align5 costs 2016.46 real_cost = 534.415 align4 costs 1863.63 real_cost = 590.189 align3 costs 1692.44 real_cost = 521.117 align2 costs 1785.18 real_cost = 563.347 align1 costs 1895.36 real_cost = 471.504 T0344.try1-opt2.pdb costs 286.486 real_cost = 339.442 model5-scwrl costs 289.685 real_cost = 392.287 model4-scwrl costs 276.286 real_cost = 358.231 model3-scwrl costs 257.009 real_cost = 359.931 model2-scwrl costs 259.529 real_cost = 360.215 model1-scwrl costs 264.096 real_cost = 368.42 T0344 costs 543.751 real_cost = -895 # command:CPU_time= 894.127 sec, elapsed time= 1042.36 sec) # command:make[1]: Leaving directory `/projects/compbio/experiments/protein-predict/casp7/T0344'