Best Alignments for T0344

To select the top models, SAM generates pairwise alignments of the target sequence and the best-scoring templates. The alignments with the best E-values are presented here.

Warning: E-values smaller than about 0.001 may be overly optimistic.

A2M alignment AL alignment Template E-value Alignment cost FSSP rep SCOP Domain(s)
1z47A/T0344-1z47A-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m 1z47A/T0344-1z47A-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.al 1.1666e+008.72e-11
1hpm/T0344-1hpm-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m 1hpm/T0344-1hpm-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.al 1.4400e+004.98e-03 1ba1 c.55.1.1
c.55.1.1
1l2tA/T0344-1l2tA-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m 1l2tA/T0344-1l2tA-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.al 1.5878e+004.74e-12 c.37.1.12
2b99A/T0344-2b99A-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m 2b99A/T0344-2b99A-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.al 2.1151e+002.38e-04
1mb3A/T0344-1mb3A-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m 1mb3A/T0344-1mb3A-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.al 2.2765e+006.80e-05 c.23.1.1
1fobA/T0344-1fobA-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m 1fobA/T0344-1fobA-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.al 2.8194e+002.06e-04 c.1.8.3
1c9kA/T0344-1c9kA-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m 1c9kA/T0344-1c9kA-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.al 3.5747e+002.58e-09 1c9kB c.37.1.11

Please cite: Karplus, K. and Karchin, R. and Barrett, C. and Tu, S. and Cline, M. and Diekhans, M. and Grate, L. and Casper, J. and Hughey, R. ``What is the value added by human intervention in protein structure prediction?'' Proteins: Structure Function and Genetics 45(S5):86-91,2001