# List of top-scoring protein chains for t06-100-30-dssp-ehl2-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # # FSSP representative for each protein chain taken from FSSP: # ------------------Citations (FSSP) ----------------------------------- # L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue FSSP-rep SCOP_domain SCOP_suid 5S 5N 12S 6S 12S 10N 1fobA 334 1.99e-01 c.1.8.3 83255 1nxmA 197 1.10e+00 b.82.1.1 86385 1z47A 355 1.17e+00 2b99A 156 1.26e+00 1l2tA 235 1.52e+00 c.37.1.12 73514 1sg4A 260 1.64e+00 1vyrA 364 2.48e+00 c.1.4.1 108906 1c9kA 180 2.75e+00 1c9kB c.37.1.11 32363 1xubA 298 2.78e+00 1w78A 422 2.80e+00 1obdA 306 3.23e+00 d.143.1.1 86767 1te0A 318 3.76e+00 1vr3A 191 3.91e+00 1e6uA 321 4.42e+00 1bsvA c.2.1.2 29805 1m6iA 493 4.55e+00 c.3.1.5,c.3.1.5,d.87.1.1 74533,74534,74535 1jf8A 131 4.69e+00 c.44.1.1 66621 1hp1A 516 4.69e+00 d.114.1.1,d.159.1.2 70976,70977 1ig3A 263 5.30e+00 1ig3A b.82.6.1,c.100.1.1 62358,62359 1w44A 331 5.68e+00 1vjoA 393 6.77e+00 c.67.1.3 100827 1mb3A 124 7.14e+00 c.23.1.1 78907 2f5tX 233 8.39e+00 1z2lA 423 8.65e+00 1srrA 124 9.31e+00 1dz3A c.23.1.1 31110 1vp8A 201 9.63e+00 2gqrA 237 9.81e+00 1f28A 297 1.00e+01 1bkpA d.117.1.1 59608 1cr1A 296 1.02e+01 1cr1A c.37.1.11 32286 1b0uA 262 1.09e+01 1b0uA c.37.1.12 32370 1k77A 260 1.22e+01 c.1.15.5 72096 1wleA 501 1.29e+01 1r0rE 274 1.32e+01 c.41.1.1 96735 2gtrA 261 1.33e+01 1u94A 356 1.33e+01 c.37.1.11,d.48.1.1 107743,107744 1ivyA 452 1.34e+01 1ivyA c.69.1.5 34654 2fp8A 322 1.37e+01 1qsmA 152 1.53e+01 1qsmA d.108.1.1 40808 2cqnA 77 1.57e+01 1v60A 123 1.58e+01 1acf 125 1.64e+01 3nul d.110.1.1 40882 2b61A 377 1.69e+01 1zhvA 134 1.79e+01 1vmoA 163 1.80e+01 1vmoA b.77.1.1 27974 1wb4A 297 1.85e+01 1tqzA 133 1.89e+01 2frnA 278 1.93e+01 1h3fA 432 1.94e+01 c.26.1.1,d.66.1.4 76631,76632 1w0dA 337 1.95e+01 1q7zA 566 1.99e+01 c.1.21.2,c.1.26.1 96090,96091 1z41A 338 2.03e+01 2aa4A 289 2.05e+01 1zn6A 227 2.07e+01 1vf8A 377 2.20e+01 7odcA 424 2.23e+01 7odcA b.49.2.3,c.1.6.1 26488,28650 1e8yA 966 2.24e+01 1e8xA a.118.1.6,b.7.1.1,d.15.1.5,d.144.1.4 19152,23187,37635,41715 2azpA 318 2.27e+01 1i39A 225 2.28e+01 1ekeA c.55.3.1 61585 1f9vA 347 2.28e+01 1bg2 c.37.1.9 59745 7a3hA 303 2.28e+01 7a3hA c.1.8.3 28817 1j5pA 253 2.35e+01 d.81.1.3,c.2.1.3 71577,83092 1zy9A 564 2.44e+01 1xqwA 293 2.47e+01 1ojqA 212 2.62e+01 d.166.1.1 93146 1hjsA 332 2.66e+01 c.1.8.3 83492 1u0sY 118 2.67e+01 c.23.1.1 107566 1v02A 565 2.71e+01 c.1.8.4 108194 1mtzA 293 2.73e+01 c.69.1.7 79467 1tmy 120 2.74e+01 1dbwA c.23.1.1 31083 1wy5A 317 2.77e+01 1s9jA 341 2.78e+01 1e19A 314 2.84e+01 1b7bA c.73.1.1 34967 1lnsA 763 2.88e+01 a.40.2.1,b.18.1.13,c.69.1.21 78101,78102,78103 1um5H 217 2.99e+01 1g7sA 594 3.02e+01 1g7rA b.43.3.1,b.43.3.1,c.20.1.1,c.37.1.8 25712,25713,31032,32147 1z90A 469 3.02e+01 2ethA 154 3.05e+01 1vqoH 171 3.14e+01 1v33A 366 3.14e+01 d.264.1.1 100278 1w5fA 353 3.20e+01 1c44A 123 3.24e+01 1qndA d.106.1.1 40795 1jkxA 212 3.26e+01 c.65.1.1 66813 1ltzA 297 3.27e+01 d.178.1.1 74254 1cnzA 363 3.28e+01 1cnzA c.77.1.1 35061 1pm3A 78 3.38e+01 b.41.1.2 94889 1o0iA 138 3.39e+01 d.38.1.5 86532 1w2xA 758 3.42e+01 c.14.1.4,c.14.1.4 109134,109135 1j8mF 297 3.50e+01 1ng1 a.24.13.1,c.37.1.10 62742,62743 1gheA 177 3.53e+01 d.108.1.1 76222 1s95A 333 3.55e+01 d.159.1.3 105375 1ebfA 358 3.56e+01 1ebuA c.2.1.3,d.81.1.2 30033,39948 1n82A 331 3.62e+01 c.1.8.3 91703 1kutA 230 3.62e+01 d.143.1.1 73017 1xp8A 366 3.64e+01 1jmvA 141 3.65e+01 c.26.2.4 66897 1svfB 38 3.70e+01 1svfB h.3.2.1 45764 1n2sA 299 3.71e+01 c.2.1.2 79857 3nul 130 3.71e+01 3nul d.110.1.1 40891 2biiA 424 3.73e+01 1m3uA 264 3.81e+01 c.1.12.8 84784 1k66A 149 3.87e+01 c.23.1.1 90941 2ck3D 482 3.93e+01 2ffcA 353 3.97e+01 1y10A 407 3.99e+01 1yavA 159 4.01e+01 1gvhA 396 4.04e+01 a.1.1.2,b.43.4.2,c.25.1.5 70601,70602,70603 1wb0A 445 4.19e+01 1nu7D 282 4.21e+01 a.8.6.1,a.8.6.1 92191,92192 1ek0A 170 4.21e+01 1ctqA c.37.1.8 32076 1ydwA 362 4.23e+01 1lv7A 257 4.30e+01 c.37.1.20 78232 1bg4 302 4.35e+01 1taxA c.1.8.3 28806 1f2vA 219 4.49e+01 1f2vA c.23.17.1 59627 1szoA 257 4.60e+01 c.14.1.3 106164 1qv9A 283 4.61e+01 c.127.1.1 96356 1thm 279 4.75e+01 1gci c.41.1.1 32544 2ge3A 170 4.75e+01 1g291 372 4.75e+01 1g291 1dysA 348 4.85e+01 1bvwA c.6.1.1 30669 2gkeA 274 4.86e+01 2anuA 255 4.87e+01 1dozA 309 4.88e+01 1ak1 c.92.1.1 35592 1fvuB 125 4.89e+01 1ixxB d.169.1.1 42346 2grrA 161 4.92e+01 1kngA 156 4.99e+01 c.47.1.10 72777 1i60A 278 4.99e+01 c.1.15.4 71118 1ufwA 95 4.99e+01 d.58.7.1 99358 1f89A 291 5.01e+01 d.160.1.1 64988 1z5yE 149 5.01e+01 1eiwA 111 5.17e+01 1eiwA c.23.3.1 31130 1u9aA 160 5.30e+01 1u9aA d.20.1.1 38333 1uyrA 737 5.31e+01 c.14.1.4,c.14.1.4 100188,100189 1lt8A 406 5.32e+01 c.1.26.1 78186 1wohA 305 5.42e+01 c.42.1.1 109446 1vdmA 153 5.43e+01 1ua4A 455 5.45e+01 c.72.1.3 99128 1ne2A 200 5.47e+01 c.66.1.32 85586 1z3eA 132 5.52e+01 2ffsA 157 5.65e+01 2f5gA 133 5.72e+01 1wurA 220 5.74e+01 1z2iA 358 5.76e+01 2b5dX 528 5.82e+01 1xfsA 178 5.86e+01 d.129.3.5 109589 1uh5A 329 5.88e+01 c.2.1.2 107840 1pcxA 810 5.88e+01 a.71.2.1,b.2.8.1,c.62.1.2,d.109.2.1,g.41.10.1 94497,94498,94499,94500,94501 1ekeA 230 5.97e+01 1ekeA c.55.3.1 33572 1n0wA 243 5.98e+01 c.37.1.11 79772 2a1xA 308 6.04e+01 6ldh 330 6.06e+01 3ldh c.2.1.5,d.162.1.1 30161,42128 2c31A 568 6.06e+01 1ne9A 335 6.06e+01 d.108.1.4,d.108.1.4 91839,91840 1io2A 213 6.09e+01 1ekeA c.55.3.1 62612 2fexA 188 6.09e+01 2c0nA 203 6.09e+01 1qxyA 252 6.15e+01 d.127.1.1 96565 1wkyA 464 6.25e+01 1juhA 350 6.27e+01 b.82.1.5 71884 2gdjA 264 6.32e+01 2czdA 208 6.40e+01 1g6hA 257 6.42e+01 1gajA c.37.1.12 60318 1yd7A 395 6.43e+01 1ypfA 336 6.49e+01 1fzqA 181 6.50e+01 1hurA c.37.1.8 32060 1ursA 402 6.52e+01 c.94.1.1 99833 2bryA 497 6.57e+01 1pwxA 254 6.58e+01 c.2.1.2 95262 1zmtA 254 6.67e+01 1nzjA 298 6.67e+01 c.26.1.1 92377 1xttA 216 6.70e+01 1r8gA 372 6.80e+01 d.128.1.3 104845 2d69A 430 6.83e+01 1rlhA 173 6.85e+01 d.256.1.1 97646 2g76A 335 6.90e+01 2bepA 159 6.92e+01 1h6dA 433 6.97e+01 c.2.1.3,d.81.1.5 65656,65657 1tljA 213 6.98e+01 d.282.1.1 107126 1bqcA 302 7.01e+01 1bqcA c.1.8.3 28831 1qhdA 398 7.07e+01 1qhdA a.115.1.2,b.19.1.1 63324,63325 1ur1A 378 7.18e+01 c.1.8.3 99804 1atg 231 7.26e+01 1atg c.94.1.1 35834 2ey4C 82 7.28e+01 1bupA 386 7.29e+01 1ba1 c.55.1.1,c.55.1.1 33377,33378 1th0A 226 7.42e+01 d.3.1.7 106903 2f4nA 273 7.47e+01 1z7gA 217 7.48e+01 1mugA 168 7.52e+01 1mugA c.18.1.2 31030 2gr8A 99 7.55e+01 1s57A 153 7.62e+01 2pia 321 7.66e+01 2pia b.43.4.2,c.25.1.2,d.15.4.2 25663,31553,37704 1ghhA 81 7.68e+01 1ghhA d.57.1.1 38940 2fyxA 143 7.72e+01 1t8tA 271 7.84e+01 c.37.1.5 106685 1z4eA 153 7.93e+01 2d4rA 147 7.94e+01 1ig0A 319 7.97e+01 1ig0A b.82.6.1,c.100.1.1 62354,62355 2bc4B 211 7.98e+01 1n57A 291 8.04e+01 c.23.16.2 85328 1vk9A 151 8.06e+01 c.139.1.1 108640 1qc7A 101 8.07e+01 1qc7A a.118.14.1 18456 1vcdA 126 8.23e+01 1h8eD 482 8.26e+01 1skyE a.69.1.1,b.49.1.1,c.37.1.11 60747,60748,60749 2b0vA 153 8.30e+01 1txvA 452 8.41e+01 1t0fA 276 8.42e+01 1o8xA 146 8.46e+01 c.47.1.10 86681 1q6oA 216 8.53e+01 c.1.2.3 95986 1rxdA 159 8.58e+01 2cw5A 255 8.59e+01 1m98A 317 8.62e+01 a.175.1.1,d.17.4.6 78866,78867 1edqA 540 8.67e+01 1ctn b.1.18.2,c.1.8.5,d.26.3.1 21873,29002,38436 1jflA 228 8.68e+01 c.78.2.1,c.78.2.1 71656,71657 1y7lA 316 8.70e+01 2bllA 345 8.79e+01 1fzvA 132 8.79e+01 1vpfA g.17.1.1 60159 2c07A 285 8.84e+01 1vb3A 428 8.87e+01 2carA 196 8.89e+01 1vfvA 366 8.90e+01 c.37.1.9 108592 2dri 271 8.99e+01 2dri c.93.1.1 35637