# List of top-scoring protein chains for t04-100-30-o_notor2-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # # FSSP representative for each protein chain taken from FSSP: # ------------------Citations (FSSP) ----------------------------------- # L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue FSSP-rep SCOP_domain SCOP_suid 5S 5N 12S 6S 12S 10N 1z47A 355 6.52e-02 2b99A 156 7.81e-02 1gvoA 364 8.12e-02 c.1.4.1 76357 1h61A 364 1.16e-01 1oyc c.1.4.1 60657 1l2tA 235 1.33e-01 c.37.1.12 73514 1vyrA 364 1.39e-01 c.1.4.1 108906 2abbA 364 1.70e-01 1vypX 364 1.90e-01 c.1.4.1 108905 2c31A 568 1.99e-01 1hp1A 516 2.21e-01 d.114.1.1,d.159.1.2 70976,70977 1jf8A 131 2.40e-01 c.44.1.1 66621 1vp8A 201 2.54e-01 1ush 550 2.76e-01 1ush d.114.1.1,d.159.1.2 40923,42079 1xx4A 261 2.79e-01 1mb3A 124 2.94e-01 c.23.1.1 78907 1e19A 314 3.05e-01 1b7bA c.73.1.1 34967 1tmy 120 3.26e-01 1dbwA c.23.1.1 31083 1b0uA 262 3.46e-01 1b0uA c.37.1.12 32370 1pvdA 537 3.49e-01 1zpdA c.31.1.3,c.36.1.5,c.36.1.9 31737,31777,31778 1h6zA 913 3.85e-01 c.1.12.2,c.8.1.1,d.142.1.5 70906,70907,70908 2ct8A 497 4.12e-01 2reb 352 4.59e-01 2reb c.37.1.11,d.48.1.1 32282,38767 1u0sY 118 4.67e-01 c.23.1.1 107566 1i39A 225 4.80e-01 1ekeA c.55.3.1 61585 1fobA 334 5.10e-01 c.1.8.3 83255 1ekeA 230 5.20e-01 1ekeA c.55.3.1 33572 1ek0A 170 5.61e-01 1ctqA c.37.1.8 32076 1a04A 215 6.11e-01 1a04A a.4.6.2,c.23.1.1 16234,31089 1cnzA 363 6.13e-01 1cnzA c.77.1.1 35061 1c9kA 180 6.19e-01 1c9kB c.37.1.11 32363 1u94A 356 6.41e-01 c.37.1.11,d.48.1.1 107743,107744 1jmvA 141 6.53e-01 c.26.2.4 66897 1nxmA 197 6.58e-01 b.82.1.1 86385 1sg4A 260 7.19e-01 1z2lA 423 7.61e-01 1cr1A 296 7.85e-01 1cr1A c.37.1.11 32286 7odcA 424 8.40e-01 7odcA b.49.2.3,c.1.6.1 26488,28650 1k77A 260 8.53e-01 c.1.15.5 72096 1io2A 213 8.68e-01 1ekeA c.55.3.1 62612 1ig3A 263 9.02e-01 1ig3A b.82.6.1,c.100.1.1 62358,62359 1gegA 256 9.31e-01 1ybvA c.2.1.2 29888 1qo2A 241 9.76e-01 1qo2A c.1.2.1 28533 1lt8A 406 1.11e+00 c.1.26.1 78186 1bg4 302 1.12e+00 1taxA c.1.8.3 28806 1rvgA 305 1.12e+00 c.1.10.2 97920 1qv9A 283 1.15e+00 c.127.1.1 96356 2gzxA 265 1.16e+00 2aa4A 289 1.39e+00 1srrA 124 1.48e+00 1dz3A c.23.1.1 31110 2b61A 377 1.55e+00 1yvkA 163 1.73e+00 1eiwA 111 1.76e+00 1eiwA c.23.3.1 31130 1mzjA 339 1.80e+00 c.95.1.2,c.95.1.2 79700,79701 1lv7A 257 1.81e+00 c.37.1.20 78232 1ep3A 311 1.81e+00 2dorA c.1.4.1 28597 2fuvA 549 1.84e+00 2a67A 167 1.86e+00 1es9A 232 1.89e+00 1wab c.23.10.3 31340 1h49A 512 1.90e+00 c.1.8.4 83477 1tv8A 340 1.91e+00 c.1.28.3 107352 2h4vA 320 1.97e+00 1e9lA 377 1.97e+00 1e9lA c.1.8.5,d.26.3.1 59395,59396 1qvbA 481 1.99e+00 1qvbA c.1.8.4 28983 1k66A 149 1.99e+00 c.23.1.1 90941 1e55A 512 1.99e+00 1e70M c.1.8.4 28934 1dbiA 280 2.00e+00 1gci c.41.1.1 32543 1wab 232 2.02e+00 1wab c.23.10.3 31341 2b7oA 464 2.19e+00 1q6oA 216 2.30e+00 c.1.2.3 95986 1uyrA 737 2.33e+00 c.14.1.4,c.14.1.4 100188,100189 1ru8A 232 2.39e+00 c.26.2.1 97849 1qwgA 251 2.41e+00 c.1.27.1 96473 1p5jA 372 2.55e+00 c.79.1.1 104067 1ko7A 314 2.56e+00 c.98.2.1,c.91.1.2 72797,72798 1yd7A 395 2.61e+00 1yu6A 275 2.66e+00 1vf8A 377 2.69e+00 2g76A 335 2.78e+00 1q7zA 566 2.81e+00 c.1.21.2,c.1.26.1 96090,96091 1kqpA 271 2.85e+00 c.26.2.1 72883 1jjiA 311 2.87e+00 c.69.1.2 66766 1h3fA 432 2.92e+00 c.26.1.1,d.66.1.4 76631,76632 1r0rE 274 2.97e+00 c.41.1.1 96735 1wleA 501 2.98e+00 1mvoA 136 3.04e+00 c.23.1.1 79513 1itg 166 3.15e+00 1b9dA c.55.3.2 33661 1umzA 278 3.17e+00 b.29.1.2 99639 1phk 298 3.17e+00 1cdkA d.144.1.7 41635 1ybdA 239 3.20e+00 1w78A 422 3.22e+00 1mzhA 225 3.22e+00 c.1.10.1 79698 1ofuA 320 3.25e+00 c.32.1.1,d.79.2.1 86972,86973 1qc7A 101 3.28e+00 1qc7A a.118.14.1 18456 1xhcA 367 3.32e+00 1r2qA 170 3.33e+00 c.37.1.8 96874 1q45A 391 3.55e+00 c.1.4.1 95780 1qxyA 252 3.58e+00 d.127.1.1 96565 1zr6A 503 3.65e+00 2gclA 261 3.87e+00 1vc1A 110 4.05e+00 c.13.2.1 108493 1zn6A 227 4.07e+00 1w5qA 337 4.10e+00 1w5fA 353 4.17e+00 2fexA 188 4.18e+00 1m6iA 493 4.22e+00 c.3.1.5,c.3.1.5,d.87.1.1 74533,74534,74535 2tpsA 227 4.26e+00 2tpsA c.1.3.1 28591 2ac4A 309 4.29e+00 2cnqA 306 4.34e+00 1oxxK 353 4.38e+00 b.40.6.3,c.37.1.12 93715,93716 1ih8A 271 4.48e+00 2nsyA c.26.2.1 62377 1dozA 309 4.58e+00 1ak1 c.92.1.1 35592 1geeA 261 4.63e+00 c.2.1.2 90509 1r4pB 70 4.64e+00 b.40.2.1 97026 1z41A 338 4.67e+00 1exqA 154 4.67e+00 1b9dA c.55.3.2 33646 1twiA 434 4.69e+00 b.49.2.3,c.1.6.1 107399,107400 1rhcA 330 4.71e+00 c.1.16.3 97468 1obdA 306 4.72e+00 d.143.1.1 86767 1itwA 741 4.73e+00 c.77.1.2 76793 2ac2A 309 4.79e+00 2az4A 429 4.79e+00 1hyvA 166 4.81e+00 1b9dA c.55.3.2 61424 1cseE 274 4.82e+00 1gci c.41.1.1 32481 1h7wA 1025 4.86e+00 1h7wA a.1.2.2,c.1.4.1,c.3.1.1,c.4.1.1,d.58.1.5 15683,28628,30324,30609,39007 1gteA 1025 4.88e+00 a.1.2.2,c.1.4.1,c.3.1.1,c.4.1.1,d.58.1.5 70440,70441,70442,70443,70444 1y9kA 157 4.89e+00 1pfkA 320 4.90e+00 3pfk c.89.1.1 35575 1s8nA 205 5.01e+00 c.23.1.1 105374 1kv8A 216 5.05e+00 c.1.2.3 73054 2czdA 208 5.06e+00 1ujpA 271 5.09e+00 c.1.2.4 99462 1b6g 310 5.12e+00 1b6g c.69.1.8 34661 1xjdA 345 5.21e+00 1huqA 164 5.27e+00 1byuA c.37.1.8 32020 1e7rA 321 5.29e+00 1bsvA c.2.1.2 29808 1ceo 343 5.52e+00 1ceo c.1.8.3 28808 1dysA 348 5.53e+00 1bvwA c.6.1.1 30669 1in4A 334 5.61e+00 1hqcA a.4.5.11,c.37.1.20 62597,62598 1qfeA 252 5.67e+00 1qfeA c.1.10.1 29167 2bm8A 236 5.68e+00 1ps9A 671 5.69e+00 c.1.4.1,c.3.1.1,c.4.1.1 95076,95077,95078 1gheA 177 5.76e+00 d.108.1.1 76222 1o69A 394 5.81e+00 c.67.1.4 92560 1pea 385 5.81e+00 1pea c.93.1.1 35662 1n2sA 299 5.95e+00 c.2.1.2 79857 3pmgA 561 5.96e+00 3pmgA c.84.1.1,c.84.1.1,c.84.1.1,d.129.2.1 35408,35409,35410,41301 1u1wA 298 6.04e+00 1b4kA 337 6.09e+00 1b4kA c.1.10.3 29184 1gqnA 252 6.13e+00 c.1.10.1 90514 1w8iA 156 6.13e+00 2axyA 73 6.18e+00 1b8gA 429 6.30e+00 1b8gA c.67.1.4 34499 1j8mF 297 6.35e+00 1ng1 a.24.13.1,c.37.1.10 62742,62743 1h5qA 265 6.36e+00 1cydA c.2.1.2 60643 1zjjA 263 6.44e+00 1howA 373 6.46e+00 1hcl d.144.1.7 41679 1thm 279 6.48e+00 1gci c.41.1.1 32544 1e6uA 321 6.50e+00 1bsvA c.2.1.2 29805 1jykA 254 6.52e+00 c.68.1.13 67458 1k1eA 180 6.53e+00 c.108.1.5 67995 1a48 306 6.63e+00 1a48 d.143.1.1 41590 1w5nA 337 6.67e+00 1w2xA 758 6.77e+00 c.14.1.4,c.14.1.4 109134,109135 2cdcA 366 6.81e+00 1o5zA 442 6.85e+00 c.59.1.2,c.72.2.2 92530,92531 1vl6A 388 6.94e+00 c.2.1.7,c.58.1.3 108724,108725 1g6hA 257 6.99e+00 1gajA c.37.1.12 60318 1ltzA 297 7.01e+00 d.178.1.1 74254 1f28A 297 7.07e+00 1bkpA d.117.1.1 59608 2d2jA 329 7.14e+00 2ethA 154 7.25e+00 1ho1A 242 7.28e+00 1ho1A c.1.24.1 61097 1z4eA 153 7.30e+00 1ynuA 473 7.31e+00 1wstA 417 7.45e+00 2a1dD 329 7.55e+00 1gcoA 261 7.61e+00 1ybvA c.2.1.2 29884 1ne9A 335 7.64e+00 d.108.1.4,d.108.1.4 91839,91840 1f1zA 273 7.69e+00 1f1zA a.4.5.27,c.52.1.16 16081,33334 1a0cA 438 7.71e+00 1a0cA c.1.15.3 29529 8acn 754 7.76e+00 1amj c.8.2.1,c.83.1.1 30724,35400 1pcxA 810 7.92e+00 a.71.2.1,b.2.8.1,c.62.1.2,d.109.2.1,g.41.10.1 94497,94498,94499,94500,94501 1v02A 565 8.04e+00 c.1.8.4 108194 1nu7D 282 8.09e+00 a.8.6.1,a.8.6.1 92191,92192 1ydwA 362 8.11e+00 1umdA 367 8.13e+00 c.36.1.11 99599 1f9zA 135 8.13e+00 1qipA d.32.1.1 38484 1hkkA 364 8.16e+00 c.1.8.5,d.26.3.1 90634,90635 1u4gA 301 8.26e+00 d.92.1.2 107670 1yavA 159 8.51e+00 2ftxB 64 8.59e+00 1gmlA 178 8.64e+00 c.8.5.2 70273 1xi3A 215 8.75e+00 c.1.3.1 109601 1ezm 301 8.81e+00 1hyt d.92.1.2 58980 1v4vA 376 8.86e+00 c.87.1.3 100313 1xrsA 516 8.94e+00 2pfkA 320 9.06e+00 3pfk c.89.1.1 35577 1wlsA 328 9.17e+00 1kblA 873 9.27e+00 c.1.12.2,c.8.1.1,d.142.1.5 68384,68385,68386 1oi7A 288 9.34e+00 c.2.1.8,c.23.4.1 87049,87050 1te0A 318 9.37e+00 1bl3A 160 9.38e+00 1b9dA c.55.3.2 33655 1z0jA 170 9.38e+00 2fukA 220 9.44e+00 1g71A 347 9.66e+00 1g71A d.264.1.1 43268 1s95A 333 9.72e+00 d.159.1.3 105375 1svdA 473 9.72e+00 1t6kA 278 9.72e+00 1nq6A 302 9.83e+00 c.1.8.3 92046 1vmoA 163 9.84e+00 1vmoA b.77.1.1 27974 1iirA 415 9.95e+00 1iirA c.87.1.5 62453 1ede 310 1.00e+01 1b6g c.69.1.8 34662 1m7yA 435 1.01e+01 c.67.1.4 78761 1xubA 298 1.01e+01 2ge3A 170 1.01e+01 1yuwA 554 1.01e+01 1vk9A 151 1.01e+01 c.139.1.1 108640 1vhnA 318 1.02e+01 c.1.4.1 100693 1gzgA 337 1.02e+01 c.1.10.3 70805 1uehA 253 1.04e+01 c.101.1.1 99259 1gca 309 1.04e+01 1gca c.93.1.1 35659 1odzA 386 1.06e+01 c.1.8.3 86889 2f5tX 233 1.08e+01 1qpoA 284 1.09e+01 1qpoA c.1.17.1,d.41.2.1 29561,38597 1pwhA 327 1.11e+01 c.79.1.1 95224 1c96A 753 1.12e+01 1amj c.8.2.1,c.83.1.1 30727,35403 1tqzA 133 1.12e+01 2a1fA 247 1.12e+01 2fp8A 322 1.14e+01 1n2eA 300 1.14e+01 c.26.1.4 85268 1ww9A 392 1.14e+01 1ursA 402 1.14e+01 c.94.1.1 99833 2fywA 267 1.15e+01 1o0yA 260 1.15e+01 c.1.10.1 80756 1hzyA 332 1.15e+01 1pscA c.1.9.3 61468 1ak5 503 1.15e+01 1ak5 c.1.5.1 28639 1v8fA 276 1.16e+01 c.26.1.4 100503 1q6cA 495 1.17e+01 c.1.8.1 95970 1m3uA 264 1.18e+01 c.1.12.8 84784 2gshA 414 1.20e+01 1ccwA 137 1.21e+01 1be1 c.23.6.1 31238 1wkyA 464 1.21e+01 1vr3A 191 1.21e+01 2f9zC 159 1.22e+01 2b5dX 528 1.22e+01 1j6oA 268 1.24e+01 c.1.9.12 77088 1uj6A 227 1.25e+01 c.124.1.4,d.58.40.1 107898,107899 1ypfA 336 1.25e+01 2bnjA 303 1.26e+01 1lwjA 441 1.26e+01 b.71.1.1,c.1.8.1 74303,74304 2dbqA 334 1.27e+01 1to3A 304 1.28e+01 c.1.10.1 107161 1vpbA 451 1.28e+01 1qhdA 398 1.28e+01 1qhdA a.115.1.2,b.19.1.1 63324,63325 1qtwA 285 1.28e+01 1qumA c.1.15.1 29392 1vl8A 267 1.29e+01 c.2.1.2 108733 1g5aA 628 1.30e+01 b.71.1.1,c.1.8.1 65152,65153 1r1dA 247 1.30e+01 c.69.1.29 96813 1ac5 483 1.32e+01 1ac5 c.69.1.5 34653 1xbbA 291 1.32e+01 1yh6A 179 1.34e+01 1i0dA 332 1.35e+01 1pscA c.1.9.3 61487 1me8A 503 1.36e+01 c.1.5.1 79028 1on0A 158 1.37e+01 d.108.1.1 87095 1q8yA 373 1.37e+01 d.144.1.7 96234 1bif 469 1.37e+01 1bif c.37.1.7,c.60.1.4 31961,34003 1o0xA 262 1.38e+01 d.127.1.1 80755 2fhxA 246 1.39e+01 1yadA 221 1.40e+01 1v04A 355 1.40e+01 b.68.6.2 100240 1oxsC 353 1.41e+01 b.40.6.3,c.37.1.12 87519,87520 2cqnA 77 1.41e+01 2anuA 255 1.41e+01 1in6A 334 1.42e+01 1hqcA a.4.5.11,c.37.1.20 62601,62602 1wg8A 285 1.43e+01 1ka2A 499 1.43e+01 d.92.1.5 77305 1ta3B 303 1.45e+01 c.1.8.3 106732 1zcoA 262 1.45e+01 1to2E 281 1.45e+01 1fa8A 135 1.46e+01 1qipA d.32.1.1 38486 2feaA 236 1.47e+01 1ig8A 486 1.51e+01 2yhx c.55.1.3,c.55.1.3 64746,64747 1usgA 346 1.52e+01 c.93.1.1 99864 2cwxA 430 1.52e+01 1edqA 540 1.52e+01 1ctn b.1.18.2,c.1.8.5,d.26.3.1 21873,29002,38436 1byb 495 1.53e+01 1byb c.1.8.1 28790 1ej2A 181 1.54e+01 1f9aA c.26.1.3 59414 1ewqA 765 1.55e+01 1ewqA a.113.1.1,c.37.1.12,c.55.6.1,d.75.2.1 19069,32383,33740,39743 1g291 372 1.56e+01 1g291 1i1wA 303 1.56e+01 c.1.8.3 76732 1auk 489 1.56e+01 1auk c.76.1.2 35030 1o58A 303 1.57e+01 c.79.1.1 92491 1lw6E 281 1.59e+01 c.41.1.1 74293 1pm3A 78 1.61e+01 b.41.1.2 94889 1zckA 154 1.61e+01 1jlnA 297 1.61e+01 1pty c.45.1.2 63172 2c07A 285 1.62e+01 1fmcA 255 1.62e+01 1cydA c.2.1.2 29856 1bqcA 302 1.62e+01 1bqcA c.1.8.3 28831 2a84A 300 1.63e+01 2gbp 309 1.64e+01 1gca c.93.1.1 35657 1o66A 275 1.64e+01 c.1.12.8 92547 1zs9A 261 1.65e+01 1y7lA 316 1.65e+01 1u6tA 121 1.65e+01 1q74A 303 1.65e+01 c.134.1.1 96019 1sup 275 1.66e+01 1gci c.41.1.1 32510 1wqaA 455 1.67e+01 1nzjA 298 1.68e+01 c.26.1.1 92377 1fjhA 257 1.68e+01 1fjhB c.2.1.2 29870 3ladA 476 1.69e+01 1lvl c.3.1.5,c.3.1.5,d.87.1.1 30573,30574,40208 1ivyA 452 1.69e+01 1ivyA c.69.1.5 34654 1fkx 349 1.69e+01 1a4mA c.1.9.1 29018 1f9yA 158 1.69e+01 d.58.30.1 83249 2frnA 278 1.71e+01 1cunA 213 1.72e+01 1cunA a.7.1.1,a.7.1.1 16313,16314 1g8lA 411 1.73e+01 1g8lA b.85.6.1,b.103.1.1,c.57.1.2 60365,60366,60367 2awaA 390 1.73e+01 1zarA 282 1.74e+01 1wzlA 585 1.75e+01 1qhfA 240 1.77e+01 1qhfA c.60.1.1 33960 2dri 271 1.78e+01 2dri c.93.1.1 35637 1ur1A 378 1.78e+01 c.1.8.3 99804 2d69A 430 1.79e+01 2d13A 227 1.79e+01 1nvmA 345 1.79e+01 a.5.7.1,c.1.10.5 86249,86250 1upaA 573 1.80e+01 c.31.1.3,c.36.1.5,c.36.1.9 99714,99715,99716 1p4fA 293 1.80e+01 d.144.1.7 104063 2bpqA 373 1.80e+01 1tufA 434 1.81e+01 b.49.2.3,c.1.6.1 107335,107336 1qipA 183 1.82e+01 1qipA d.32.1.1 38470 1jx7A 117 1.84e+01 c.114.1.1 77195 1mtzA 293 1.84e+01 c.69.1.7 79467 2fh7A 595 1.84e+01 1gbg 214 1.84e+01 1axkA b.29.1.2 24171 2ap1A 327 1.85e+01 1o4vA 183 1.87e+01 c.23.8.1 86628 1lw7A 365 1.92e+01 c.26.1.3,c.37.1.1 74295,74296 1gpuA 680 1.92e+01 c.36.1.10,c.36.1.6,c.48.1.1 65454,65455,65456 1v6tA 255 1.92e+01 2b8eA 273 1.94e+01 1t0fA 276 1.94e+01 2b0tA 738 1.98e+01 1gvfA 286 1.98e+01 c.1.10.2 70599 1efvB 255 1.99e+01 1efvB c.26.2.3 31634 2f9lA 199 1.99e+01 1xttA 216 1.99e+01 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