# List of top-scoring protein chains for t04-100-30-near-backbone-11-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # # FSSP representative for each protein chain taken from FSSP: # ------------------Citations (FSSP) ----------------------------------- # L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue FSSP-rep SCOP_domain SCOP_suid 5S 5N 12S 6S 12S 10N 2cqnA 77 8.42e-01 2anuA 255 8.69e-01 1svfB 38 1.10e+00 1svfB h.3.2.1 45764 2bvpA 276 1.28e+00 1yuwA 554 1.52e+00 1tmy 120 1.72e+00 1dbwA c.23.1.1 31083 6ldh 330 1.77e+00 3ldh c.2.1.5,d.162.1.1 30161,42128 1mb3A 124 1.85e+00 c.23.1.1 78907 1z47A 355 2.04e+00 2b5dX 528 2.14e+00 1u0sY 118 2.33e+00 c.23.1.1 107566 2b99A 156 2.38e+00 1c9kA 180 2.45e+00 1c9kB c.37.1.11 32363 1jf8A 131 3.16e+00 c.44.1.1 66621 2fo1D 85 3.20e+00 1srrA 124 3.61e+00 1dz3A c.23.1.1 31110 1bupA 386 4.00e+00 1ba1 c.55.1.1,c.55.1.1 33377,33378 1nxmA 197 4.17e+00 b.82.1.1 86385 1yh3A 256 4.19e+00 1kay 381 4.49e+00 1ba1 c.55.1.1,c.55.1.1 33385,33386 1l2tA 235 4.68e+00 c.37.1.12 73514 1ccwA 137 6.16e+00 1be1 c.23.6.1 31238 1fobA 334 6.21e+00 c.1.8.3 83255 2eshA 118 6.48e+00 1vp8A 201 7.03e+00 2d48A 129 7.59e+00 1mvoA 136 9.83e+00 c.23.1.1 79513 2ethA 154 1.04e+01 2feaA 236 1.10e+01 2f5gA 133 1.15e+01 1a04A 215 1.19e+01 1a04A a.4.6.2,c.23.1.1 16234,31089 2d28C 149 1.37e+01 1e19A 314 1.41e+01 1b7bA c.73.1.1 34967 2d27A 149 1.43e+01 1ydwA 362 1.43e+01 1vk9A 151 1.55e+01 c.139.1.1 108640 1w8iA 156 1.56e+01 1qrvA 73 1.59e+01 1cktA a.21.1.1 16425 2fbiA 142 1.62e+01 1hziA 129 1.69e+01 1rcb a.26.1.2 61449 1m6pA 152 1.75e+01 1m6pA b.64.1.1 27519 1h54A 754 1.76e+01 a.102.1.4,b.30.5.3 60634,60635 1ntyA 311 1.81e+01 a.87.1.1,b.55.1.1 103873,103874 2eueA 279 1.99e+01 1vgjA 184 1.99e+01 1rcb 129 2.00e+01 1rcb a.26.1.2 16854 1wd5A 208 2.01e+01 1gh9A 71 2.40e+01 1gh9A g.41.6.1 45266 1n13B 113 2.45e+01 1vdxA 184 2.47e+01 1vhmA 195 2.54e+01 d.110.2.1 100691 1n2sA 299 2.57e+01 c.2.1.2 79857 1mzjA 339 2.59e+01 c.95.1.2,c.95.1.2 79700,79701 1i50H 146 2.63e+01 b.40.4.8 61761 1lldA 319 2.69e+01 3ldh c.2.1.5,d.162.1.1 30177,42144 1s8nA 205 2.72e+01 c.23.1.1 105374 1pmi 440 2.75e+01 1pmi b.82.1.3 28114 1eceA 358 2.81e+01 1eceA c.1.8.3 28813 1wovA 250 2.98e+01 1g8sA 230 3.08e+01 c.66.1.3 90507 1eciA 37 3.24e+01 1eciA a.33.1.1 16999 1itvA 195 3.27e+01 b.66.1.1 76791 1ukxA 137 3.28e+01 d.20.1.3 107919 1u9lA 70 3.35e+01 a.60.4.2 107751 1p42A 270 3.36e+01 d.14.1.7,d.14.1.7 87754,87755 1vjoA 393 3.37e+01 c.67.1.3 100827 1zanL 214 3.69e+01 1ebfA 358 3.91e+01 1ebuA c.2.1.3,d.81.1.2 30033,39948 1v71A 323 3.92e+01 1ufiA 64 3.93e+01 a.30.4.1 99336 1squA 155 3.99e+01 d.252.1.1 98971 2ffcA 353 4.10e+01 2au3A 407 4.11e+01 2gclA 261 4.13e+01 1e6cA 173 4.14e+01 1shkA c.37.1.2 59296 1qxyA 252 4.15e+01 d.127.1.1 96565 1yvkA 163 4.22e+01 1nnwA 252 4.32e+01 d.159.1.5 80674 1uv4A 293 4.34e+01 1t8tA 271 4.34e+01 c.37.1.5 106685 2gqrA 237 4.35e+01 1gyfA 62 4.42e+01 1gyfA d.76.1.1 39749 1fbnA 230 4.43e+01 1fbnA c.66.1.3 34181 1a0tP 413 4.47e+01 1a0tP f.4.3.2 43794 1ltzA 297 4.59e+01 d.178.1.1 74254 1fzqA 181 4.60e+01 1hurA c.37.1.8 32060 1b0uA 262 4.60e+01 1b0uA c.37.1.12 32370 1pzgA 331 4.88e+01 c.2.1.5,d.162.1.1 95425,95426 1vzwA 244 4.88e+01 1r4pB 70 5.17e+01 b.40.2.1 97026 1wh8A 111 5.21e+01 2ct8A 497 5.30e+01 2fbwC 141 5.32e+01 1z5zA 271 5.35e+01 1xebA 150 5.44e+01 2f4nA 273 5.59e+01 2bf5A 98 5.60e+01 1wjvA 79 5.68e+01 1wz9A 375 5.90e+01 2fyxA 143 5.92e+01 1o5kA 306 6.20e+01 c.1.10.1 92504 1h2cA 140 6.37e+01 b.31.1.1 83462 1po5A 476 6.47e+01 a.104.1.1 94963 2fcr 173 6.54e+01 1rcf c.23.5.1 31151 1cnzA 363 6.59e+01 1cnzA c.77.1.1 35061 1p5jA 372 6.63e+01 c.79.1.1 104067 1dpjA 329 6.67e+01 1smrA b.50.1.2 26828 1jmxB 349 6.68e+01 b.69.2.2 66906 1drw 273 6.82e+01 1drw c.2.1.3,d.81.1.3 30057,39972 2fi9A 128 6.85e+01 1twfH 146 6.96e+01 1xsvA 113 7.07e+01 1ytw 306 7.07e+01 1ytw c.45.1.2 32689 1th0A 226 7.15e+01 d.3.1.7 106903 1sxgA 280 7.21e+01 1nni1 174 7.21e+01 1k66A 149 7.24e+01 c.23.1.1 90941 2b7kA 200 7.25e+01 1m48A 133 7.29e+01 a.26.1.2 74443 1syxB 86 7.35e+01 1ytzT 107 7.49e+01 1gheA 177 7.53e+01 d.108.1.1 76222 2c2aA 258 7.62e+01 1wudA 89 7.67e+01 2awaA 390 7.71e+01 1zr6A 503 7.75e+01 2bl5A 140 7.88e+01 7odcA 424 7.93e+01 7odcA b.49.2.3,c.1.6.1 26488,28650 1cunA 213 8.01e+01 1cunA a.7.1.1,a.7.1.1 16313,16314 1vpqA 273 8.03e+01 1w25A 459 8.07e+01 1xb4A 202 8.10e+01 1vypX 364 8.18e+01 c.1.4.1 108905 1q6oA 216 8.40e+01 c.1.2.3 95986 1a48 306 8.43e+01 1a48 d.143.1.1 41590 2czdA 208 8.52e+01 1kqpA 271 8.54e+01 c.26.2.1 72883 1gmmA 133 8.66e+01 b.18.1.10 65314 1rypG 244 8.72e+01 d.153.1.4 41938 1z2lA 423 8.76e+01 2bbkL 125 8.83e+01 2bbkL g.21.1.1 44882 1u0sA 86 8.90e+01 d.58.24.1 107565