# List of top-scoring protein chains for t04-100-30-dssp-ehl2-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # # FSSP representative for each protein chain taken from FSSP: # ------------------Citations (FSSP) ----------------------------------- # L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue FSSP-rep SCOP_domain SCOP_suid 5S 5N 12S 6S 12S 10N 1fobA 334 2.74e-01 c.1.8.3 83255 1xx4A 261 5.10e-01 2b99A 156 1.02e+00 1nxmA 197 1.08e+00 b.82.1.1 86385 1z47A 355 1.14e+00 1sg4A 260 1.29e+00 1l2tA 235 1.51e+00 c.37.1.12 73514 1t6kA 278 1.61e+00 1u1wA 298 1.86e+00 1xubA 298 2.36e+00 1vypX 364 2.38e+00 c.1.4.1 108905 1c9kA 180 2.55e+00 1c9kB c.37.1.11 32363 1vyrA 364 2.64e+00 c.1.4.1 108906 1gvoA 364 2.70e+00 c.1.4.1 76357 1p5jA 372 2.84e+00 c.79.1.1 104067 1h61A 364 2.91e+00 1oyc c.1.4.1 60657 2ct8A 497 3.04e+00 2abbA 364 3.08e+00 1w78A 422 3.12e+00 1obdA 306 3.42e+00 d.143.1.1 86767 1te0A 318 3.56e+00 1nekA 588 3.84e+00 a.7.3.1,c.3.1.4,d.168.1.1 80426,80427,80428 2reb 352 3.88e+00 2reb c.37.1.11,d.48.1.1 32282,38767 1a48 306 3.88e+00 1a48 d.143.1.1 41590 1e7rA 321 4.69e+00 1bsvA c.2.1.2 29808 1ush 550 4.75e+00 1ush d.114.1.1,d.159.1.2 40923,42079 1m6iA 493 4.80e+00 c.3.1.5,c.3.1.5,d.87.1.1 74533,74534,74535 1jf8A 131 4.84e+00 c.44.1.1 66621 2f5tX 233 4.90e+00 1hp1A 516 4.96e+00 d.114.1.1,d.159.1.2 70976,70977 1z2lA 423 5.08e+00 1vr3A 191 5.79e+00 1e6uA 321 5.84e+00 1bsvA c.2.1.2 29805 1ig3A 263 6.19e+00 1ig3A b.82.6.1,c.100.1.1 62358,62359 1yvkA 163 7.63e+00 1f28A 297 7.87e+00 1bkpA d.117.1.1 59608 1vjoA 393 8.18e+00 c.67.1.3 100827 1yuwA 554 8.64e+00 1mb3A 124 8.68e+00 c.23.1.1 78907 1cr1A 296 8.81e+00 1cr1A c.37.1.11 32286 1wleA 501 9.66e+00 2gqrA 237 9.86e+00 1pwhA 327 1.00e+01 c.79.1.1 95224 1srrA 124 1.07e+01 1dz3A c.23.1.1 31110 1yu6A 275 1.08e+01 1w44A 331 1.08e+01 2fp8A 322 1.08e+01 1h49A 512 1.10e+01 c.1.8.4 83477 1e55A 512 1.10e+01 1e70M c.1.8.4 28934 1u94A 356 1.12e+01 c.37.1.11,d.48.1.1 107743,107744 1y9kA 157 1.16e+01 1vp8A 201 1.18e+01 1ivyA 452 1.19e+01 1ivyA c.69.1.5 34654 1b0uA 262 1.33e+01 1b0uA c.37.1.12 32370 1r0rE 274 1.34e+01 c.41.1.1 96735 1k77A 260 1.42e+01 c.1.15.5 72096 1wb4A 297 1.58e+01 1v60A 123 1.68e+01 2b61A 377 1.72e+01 2azpA 318 1.72e+01 1zhvA 134 1.76e+01 1g0hA 252 1.76e+01 1dk4A e.7.1.1 60171 2b6eA 146 1.81e+01 1j8yF 297 1.83e+01 1ng1 a.24.13.1,c.37.1.10 62747,62748 1ac5 483 1.86e+01 1ac5 c.69.1.5 34653 1mtzA 293 1.87e+01 c.69.1.7 79467 1xqwA 293 1.89e+01 2gtrA 261 1.89e+01 1o0iA 138 2.04e+01 d.38.1.5 86532 1icxA 155 2.04e+01 d.129.3.1 71191 1vmoA 163 2.05e+01 1vmoA b.77.1.1 27974 1s72H 171 2.10e+01 d.41.4.1 105327 1acf 125 2.17e+01 3nul d.110.1.1 40882 1gklA 297 2.21e+01 c.69.1.2 65250 1cseE 274 2.27e+01 1gci c.41.1.1 32481 1u9jA 358 2.28e+01 1qsmA 152 2.35e+01 1qsmA d.108.1.1 40808 1j5pA 253 2.41e+01 d.81.1.3,c.2.1.3 71577,83092 1s9jA 341 2.45e+01 1ko7A 314 2.46e+01 c.98.2.1,c.91.1.2 72797,72798 1zn6A 227 2.59e+01 1lci 550 2.60e+01 1lci e.23.1.1 43349 2aa4A 289 2.64e+01 1u0sY 118 2.70e+01 c.23.1.1 107566 2ethA 154 2.70e+01 1tmy 120 2.78e+01 1dbwA c.23.1.1 31083 1lnsA 763 2.87e+01 a.40.2.1,b.18.1.13,c.69.1.21 78101,78102,78103 1vf8A 377 2.88e+01 1tqzA 133 2.89e+01 7odcA 424 2.90e+01 7odcA b.49.2.3,c.1.6.1 26488,28650 1a04A 215 2.92e+01 1a04A a.4.6.2,c.23.1.1 16234,31089 2cqnA 77 2.92e+01 1f9vA 347 2.96e+01 1bg2 c.37.1.9 59745 1xp8A 366 2.97e+01 2frnA 278 2.99e+01 7a3hA 303 3.00e+01 7a3hA c.1.8.3 28817 1e79D 482 3.06e+01 1skyE a.69.1.1,b.49.1.1,c.37.1.11 18272,26437,32317 1w2xA 758 3.11e+01 c.14.1.4,c.14.1.4 109134,109135 1h3fA 432 3.17e+01 c.26.1.1,d.66.1.4 76631,76632 1e9lA 377 3.19e+01 1e9lA c.1.8.5,d.26.3.1 59395,59396 2ck3D 482 3.22e+01 1n82A 331 3.27e+01 c.1.8.3 91703 1g7sA 594 3.33e+01 1g7rA b.43.3.1,b.43.3.1,c.20.1.1,c.37.1.8 25712,25713,31032,32147 1z41A 338 3.35e+01 1ciy 590 3.45e+01 1ciy b.18.1.3,b.77.2.1,f.1.3.1 23720,27977,43392 1qvbA 481 3.46e+01 1qvbA c.1.8.4 28983 1y10A 407 3.56e+01 1hjsA 332 3.57e+01 c.1.8.3 83492 1yavA 159 3.57e+01 1i39A 225 3.62e+01 1ekeA c.55.3.1 61585 1ebfA 358 3.62e+01 1ebuA c.2.1.3,d.81.1.2 30033,39948 1n2sA 299 3.63e+01 c.2.1.2 79857 1w5fA 353 3.65e+01 1pm3A 78 3.70e+01 b.41.1.2 94889 1j8mF 297 3.74e+01 1ng1 a.24.13.1,c.37.1.10 62742,62743 1v33A 366 3.76e+01 d.264.1.1 100278 1cnzA 363 3.79e+01 1cnzA c.77.1.1 35061 3nul 130 3.92e+01 3nul d.110.1.1 40891 1pcxA 810 3.95e+01 a.71.2.1,b.2.8.1,c.62.1.2,d.109.2.1,g.41.10.1 94497,94498,94499,94500,94501 1um5H 217 3.96e+01 1wurA 220 3.99e+01 1c44A 123 4.07e+01 1qndA d.106.1.1 40795 2gkeA 274 4.11e+01 1z90A 469 4.20e+01 1qsoA 149 4.21e+01 1qsmA d.108.1.1 40812 1z7bA 358 4.24e+01 1e8yA 966 4.27e+01 1e8xA a.118.1.6,b.7.1.1,d.15.1.5,d.144.1.4 19152,23187,37635,41715 1e19A 314 4.29e+01 1b7bA c.73.1.1 34967 1v02A 565 4.39e+01 c.1.8.4 108194 1jkxA 212 4.40e+01 c.65.1.1 66813 1w0dA 337 4.41e+01 1ofuA 320 4.43e+01 c.32.1.1,d.79.2.1 86972,86973 1gheA 177 4.46e+01 d.108.1.1 76222 1phk 298 4.48e+01 1cdkA d.144.1.7 41635 2ffcA 353 4.49e+01 1hkkA 364 4.52e+01 c.1.8.5,d.26.3.1 90634,90635 1szoA 257 4.58e+01 c.14.1.3 106164 1vqoH 171 4.61e+01 1ojqA 212 4.66e+01 d.166.1.1 93146 1s95A 333 4.70e+01 d.159.1.3 105375 1uyrA 737 4.82e+01 c.14.1.4,c.14.1.4 100188,100189 1z5yE 149 4.86e+01 1o8uA 257 4.92e+01 c.14.1.3 81194 1bg4 302 4.94e+01 1taxA c.1.8.3 28806 1svfB 38 4.95e+01 1svfB h.3.2.1 45764 1i60A 278 4.95e+01 c.1.15.4 71118 1nu7D 282 4.95e+01 a.8.6.1,a.8.6.1 92191,92192 2biiA 424 5.06e+01 1n0wA 243 5.21e+01 c.37.1.11 79772 2d4rA 147 5.25e+01 1jmvA 141 5.30e+01 c.26.2.4 66897 1vl8A 267 5.31e+01 c.2.1.2 108733 2b0vA 153 5.33e+01 1dysA 348 5.35e+01 1bvwA c.6.1.1 30669 1xwiA 322 5.39e+01 1zckA 154 5.49e+01 1ezm 301 5.53e+01 1hyt d.92.1.2 58980 2ffsA 157 5.54e+01 1kutA 230 5.59e+01 d.143.1.1 73017 1ltzA 297 5.65e+01 d.178.1.1 74254 2ge3A 170 5.71e+01 1m3uA 264 5.72e+01 c.1.12.8 84784 2bp1A 360 5.73e+01 1q7zA 566 5.76e+01 c.1.21.2,c.1.26.1 96090,96091 1i6iA 366 5.80e+01 1bg2 c.37.1.9 61844 1g291 372 5.81e+01 1g291 1qv9A 283 5.85e+01 c.127.1.1 96356 1bupA 386 5.86e+01 1ba1 c.55.1.1,c.55.1.1 33377,33378 2f5gA 133 5.86e+01 1h8gA 95 5.89e+01 b.109.1.1 65735 1wb0A 445 5.92e+01 1zclA 180 5.93e+01 1zy9A 564 6.00e+01 1lt8A 406 6.01e+01 c.1.26.1 78186 1ufwA 95 6.01e+01 d.58.7.1 99358 1v5wA 343 6.02e+01 c.37.1.11 108387 1g71A 347 6.09e+01 1g71A d.264.1.1 43268 2fexA 188 6.11e+01 1z2iA 358 6.13e+01 1gvhA 396 6.19e+01 a.1.1.2,b.43.4.2,c.25.1.5 70601,70602,70603 1fzqA 181 6.43e+01 1hurA c.37.1.8 32060 1f89A 291 6.46e+01 d.160.1.1 64988 2a1xA 308 6.49e+01 1rlhA 173 6.57e+01 d.256.1.1 97646 1lv7A 257 6.60e+01 c.37.1.20 78232 2gdjA 264 6.62e+01 2ey4C 82 6.71e+01 1qoiA 177 6.76e+01 2cpl b.62.1.1 27490 1thm 279 6.83e+01 1gci c.41.1.1 32544 1shsA 147 6.89e+01 1shsA b.15.1.1 23675 1f2vA 219 6.93e+01 1f2vA c.23.17.1 59627 1pwxA 254 7.00e+01 c.2.1.2 95262 1k66A 149 7.08e+01 c.23.1.1 90941 2gr8A 99 7.11e+01 1ne2A 200 7.12e+01 c.66.1.32 85586 1h8eD 482 7.15e+01 1skyE a.69.1.1,b.49.1.1,c.37.1.11 60747,60748,60749 1uh5A 329 7.17e+01 c.2.1.2 107840 1zmtA 254 7.21e+01 1ne9A 335 7.22e+01 d.108.1.4,d.108.1.4 91839,91840 1kngA 156 7.26e+01 c.47.1.10 72777 2bl5A 140 7.37e+01 1vfvA 366 7.40e+01 c.37.1.9 108592 2ac2A 309 7.44e+01 1dozA 309 7.50e+01 1ak1 c.92.1.1 35592 2ac4A 309 7.56e+01 1wy5A 317 7.61e+01 2anuA 255 7.61e+01 1eiwA 111 7.69e+01 1eiwA c.23.3.1 31130 1z7gA 217 7.72e+01 1yd7A 395 7.93e+01 2fyxA 143 7.93e+01 2grrA 161 7.97e+01 1kay 381 8.02e+01 1ba1 c.55.1.1,c.55.1.1 33385,33386 2czdA 208 8.05e+01 1fvuB 125 8.13e+01 1ixxB d.169.1.1 42346 1t8tA 271 8.14e+01 c.37.1.5 106685 2pia 321 8.21e+01 2pia b.43.4.2,c.25.1.2,d.15.4.2 25663,31553,37704 1ekeA 230 8.21e+01 1ekeA c.55.3.1 33572 1c3wA 222 8.22e+01 1c3wA f.13.1.1 43405 1h6dA 433 8.26e+01 c.2.1.3,d.81.1.5 65656,65657 1mzjA 339 8.36e+01 c.95.1.2,c.95.1.2 79700,79701 2bc4B 211 8.37e+01 1ydwA 362 8.40e+01 2c0nA 203 8.50e+01 1o70A 324 8.57e+01 b.118.1.1,b.118.1.1 81115,81116 1n13B 113 8.58e+01 1wohA 305 8.59e+01 c.42.1.1 109446 1u9aA 160 8.67e+01 1u9aA d.20.1.1 38333 2b5dX 528 8.80e+01 2cdcA 366 8.83e+01 1k68A 140 8.84e+01 c.23.1.1 90943 1r8gA 372 8.87e+01 d.128.1.3 104845 1ua4A 455 8.99e+01 c.72.1.3 99128