Best Alignments for T0344

To select the top models, SAM generates pairwise alignments of the target sequence and the best-scoring templates. The alignments with the best E-values are presented here.

Warning: E-values smaller than about 0.001 may be overly optimistic.

A2M alignment AL alignment Template E-value Alignment cost FSSP rep SCOP Domain(s)
1z47A/T0344-1z47A-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m 1z47A/T0344-1z47A-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.al 5.4693e-012.28e-09
1fobA/T0344-1fobA-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m 1fobA/T0344-1fobA-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.al 8.1635e-011.83e-05 c.1.8.3
1l2tA/T0344-1l2tA-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m 1l2tA/T0344-1l2tA-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.al 1.1728e+008.87e-09 c.37.1.12
1h61A/T0344-1h61A-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m 1h61A/T0344-1h61A-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.al 1.2701e+001.24e-06 1oyc c.1.4.1
2b99A/T0344-2b99A-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m 2b99A/T0344-2b99A-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.al 2.4365e+009.06e-04
2anuA/T0344-2anuA-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m 2anuA/T0344-2anuA-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.al 3.3350e+004.38e-13
1c9kA/T0344-1c9kA-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m 1c9kA/T0344-1c9kA-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.al 3.4763e+003.46e-07 1c9kB c.37.1.11
1m5tA/T0344-1m5tA-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m 1m5tA/T0344-1m5tA-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.al 3.6736e+007.16e-04 c.23.1.1
2abbA/T0344-2abbA-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m 2abbA/T0344-2abbA-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.al 3.7096e+001.55e-06
1vp8A/T0344-1vp8A-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m 1vp8A/T0344-1vp8A-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.al 4.8266e+003.16e-05

Please cite: Karplus, K. and Karchin, R. and Barrett, C. and Tu, S. and Cline, M. and Diekhans, M. and Grate, L. and Casper, J. and Hughey, R. ``What is the value added by human intervention in protein structure prediction?'' Proteins: Structure Function and Genetics 45(S5):86-91,2001