Best Alignments for T0343

To select the top models, SAM generates pairwise alignments of the target sequence and the best-scoring templates. The alignments with the best E-values are presented here.

Warning: E-values smaller than about 0.001 may be overly optimistic.

A2M alignment AL alignment Template E-value Alignment cost FSSP rep SCOP Domain(s)
1p90A/T0343-1p90A-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m 1p90A/T0343-1p90A-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.al 5.8974e+002.49e-09 c.55.5.2
2ap1A/T0343-2ap1A-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m 2ap1A/T0343-2ap1A-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.al 6.0841e+001.25e-13
2bkrA/T0343-2bkrA-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m 2bkrA/T0343-2bkrA-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.al 7.4382e+001.52e-07
2b49A/T0343-2b49A-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m 2b49A/T0343-2b49A-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.al 8.9839e+007.30e-08
1hq0A/T0343-1hq0A-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m 1hq0A/T0343-1hq0A-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.al 1.1481e+016.97e-08 1hzgA d.194.1.1
1dc1A/T0343-1dc1A-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m 1dc1A/T0343-1dc1A-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.al 1.4365e+014.62e-07 1dc1A c.52.1.11
1yw5A/T0343-1yw5A-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m 1yw5A/T0343-1yw5A-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.al 1.4425e+011.94e-08
1ofuX/T0343-1ofuX-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m 1ofuX/T0343-1ofuX-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.al 1.5040e+012.24e-11 c.37.1.22
3cla/T0343-3cla-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m 3cla/T0343-3cla-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.al 1.6194e+011.00e-05 3cla c.43.1.1
1y74A/T0343-1y74A-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m 1y74A/T0343-1y74A-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.al 1.6454e+012.62e-02

Please cite: Karplus, K. and Karchin, R. and Barrett, C. and Tu, S. and Cline, M. and Diekhans, M. and Grate, L. and Casper, J. and Hughey, R. ``What is the value added by human intervention in protein structure prediction?'' Proteins: Structure Function and Genetics 45(S5):86-91,2001