Best Alignments for T0343

To select the top models, SAM generates pairwise alignments of the target sequence and the best-scoring templates. The alignments with the best E-values are presented here.

Warning: E-values smaller than about 0.001 may be overly optimistic.

A2M alignment AL alignment Template E-value Alignment cost FSSP rep SCOP Domain(s)
2bkqA/T0343-2bkqA-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m 2bkqA/T0343-2bkqA-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.al 4.5874e+002.00e-07
1p90A/T0343-1p90A-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m 1p90A/T0343-1p90A-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.al 4.6365e+004.17e-09 c.55.5.2
2bkrA/T0343-2bkrA-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m 2bkrA/T0343-2bkrA-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.al 4.6904e+001.52e-07
2ap1A/T0343-2ap1A-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m 2ap1A/T0343-2ap1A-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.al 4.7864e+001.25e-13
1euvA/T0343-1euvA-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m 1euvA/T0343-1euvA-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.al 4.9831e+001.64e-09 1euvA d.3.1.7
1xt9A/T0343-1xt9A-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m 1xt9A/T0343-1xt9A-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.al 8.2540e+006.28e-07
1wbpA/T0343-1wbpA-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m 1wbpA/T0343-1wbpA-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.al 9.4534e+002.83e-11
1wnaA/T0343-1wnaA-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m 1wnaA/T0343-1wnaA-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.al 1.1265e+014.31e-11
2b49A/T0343-2b49A-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m 2b49A/T0343-2b49A-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.al 1.2264e+017.30e-08
1fchA/T0343-1fchA-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m 1fchA/T0343-1fchA-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.al 1.4477e+018.23e-05 1fchA a.118.8.1

Please cite: Karplus, K. and Karchin, R. and Barrett, C. and Tu, S. and Cline, M. and Diekhans, M. and Grate, L. and Casper, J. and Hughey, R. ``What is the value added by human intervention in protein structure prediction?'' Proteins: Structure Function and Genetics 45(S5):86-91,2001