# TARGET T0343 # Using neural net t2k-5651-IDaaHr-5-15-7-15-9-15-13-ebghtl-seeded.net # This is a 4-layer network, with # window units # 5 15 # 7 15 # 9 15 # 13 6 (1 EBGHTL ) # The input amino acid frequencies were determined from # alignment T0343.t2k-thin90.a2m.gz # with weighted counts, using HenikoffWeight(-1 bits/column, 1) # Counts were regularized to probabilities using # /projects/compbio/lib/recode3.20comp # Total sequence weight for alignment was 3 # Pos AA E B G H T C 10N 1S 5N 5N 5N 5N 5N 5N 1 M 0.027 0.009 0.002 0.116 0.124 0.721 2 T 0.058 0.024 0.001 0.269 0.029 0.619 3 W 0.006 0.001 0.001 0.969 0.004 0.019 4 R 0.002 0.001 0.003 0.990 0.003 0.003 5 E 0.003 0.001 0.004 0.981 0.008 0.003 6 I 0.003 0.001 0.005 0.975 0.013 0.004 7 L 0.003 0.001 0.005 0.965 0.018 0.009 8 R 0.006 0.001 0.008 0.934 0.037 0.015 9 K 0.006 0.001 0.010 0.887 0.064 0.033 10 E 0.015 0.002 0.021 0.679 0.154 0.129 11 G 0.017 0.002 0.007 0.035 0.244 0.695 12 F 0.178 0.007 0.021 0.024 0.306 0.464 13 L 0.655 0.022 0.016 0.012 0.178 0.116 14 D 0.699 0.020 0.015 0.014 0.156 0.095 15 L 0.601 0.007 0.034 0.013 0.299 0.047 16 G 0.147 0.003 0.065 0.023 0.690 0.073 17 E 0.379 0.003 0.033 0.010 0.479 0.097 18 F 0.903 0.001 0.002 0.001 0.050 0.043 19 I 0.973 0.002 0.001 0.001 0.004 0.021 20 V 0.994 0.001 0.001 0.001 0.001 0.004 21 E 0.994 0.001 0.001 0.001 0.001 0.005 22 L 0.988 0.001 0.001 0.001 0.002 0.010 23 V 0.970 0.001 0.001 0.001 0.007 0.020 24 Y 0.908 0.008 0.001 0.001 0.031 0.051 25 I 0.504 0.006 0.004 0.003 0.245 0.238 26 D 0.165 0.015 0.005 0.004 0.422 0.389 27 C 0.121 0.030 0.004 0.004 0.387 0.454 28 P 0.085 0.024 0.006 0.008 0.314 0.563 29 C 0.057 0.015 0.033 0.017 0.364 0.514 30 E 0.076 0.019 0.052 0.018 0.370 0.464 31 P 0.097 0.018 0.028 0.018 0.272 0.566 32 I 0.055 0.036 0.005 0.009 0.156 0.739 33 P 0.045 0.006 0.004 0.004 0.094 0.848 34 P 0.269 0.010 0.019 0.009 0.139 0.554 35 T 0.743 0.005 0.015 0.006 0.073 0.158 36 L 0.934 0.003 0.005 0.002 0.016 0.040 37 A 0.969 0.001 0.001 0.001 0.006 0.021 38 I 0.965 0.001 0.001 0.001 0.008 0.023 39 Y 0.934 0.004 0.001 0.001 0.016 0.043 40 D 0.704 0.008 0.004 0.002 0.174 0.108 41 K 0.187 0.009 0.009 0.005 0.705 0.086 42 K 0.075 0.008 0.011 0.003 0.817 0.086 43 G 0.077 0.012 0.009 0.003 0.816 0.082 44 D 0.218 0.007 0.008 0.004 0.430 0.334 45 E 0.756 0.022 0.004 0.003 0.066 0.150 46 W 0.903 0.006 0.002 0.002 0.026 0.060 47 Y 0.934 0.003 0.001 0.003 0.018 0.040 48 K 0.935 0.007 0.002 0.004 0.018 0.034 49 V 0.810 0.009 0.010 0.014 0.076 0.082 50 E 0.503 0.004 0.015 0.023 0.220 0.234 51 E 0.204 0.010 0.017 0.022 0.348 0.399 52 A 0.091 0.016 0.016 0.013 0.462 0.403 53 P 0.045 0.010 0.036 0.014 0.508 0.387 54 N 0.039 0.009 0.074 0.021 0.522 0.333 55 V 0.046 0.017 0.053 0.051 0.519 0.315 56 Q 0.040 0.016 0.026 0.081 0.345 0.491 57 N 0.071 0.018 0.014 0.088 0.220 0.588 58 Y 0.017 0.003 0.032 0.804 0.074 0.070 59 R 0.010 0.001 0.032 0.864 0.057 0.036 60 E 0.006 0.001 0.031 0.891 0.050 0.022 61 A 0.005 0.002 0.018 0.911 0.036 0.028 62 V 0.002 0.001 0.008 0.958 0.016 0.015 63 E 0.002 0.001 0.007 0.965 0.015 0.012 64 W 0.002 0.001 0.006 0.966 0.011 0.015 65 A 0.004 0.002 0.003 0.969 0.006 0.015 66 I 0.004 0.001 0.002 0.988 0.002 0.005 67 E 0.006 0.001 0.002 0.983 0.003 0.005 68 V 0.006 0.001 0.003 0.986 0.002 0.002 69 L 0.008 0.001 0.003 0.986 0.002 0.002 70 E 0.010 0.001 0.003 0.981 0.003 0.002 71 R 0.013 0.001 0.005 0.967 0.007 0.007 72 I 0.027 0.001 0.005 0.930 0.016 0.022 73 R 0.099 0.010 0.009 0.751 0.084 0.047 74 D 0.080 0.013 0.012 0.374 0.345 0.176 75 G 0.025 0.002 0.014 0.040 0.634 0.286 76 E 0.083 0.009 0.010 0.012 0.564 0.321 77 N 0.331 0.018 0.004 0.003 0.216 0.427 78 V 0.673 0.013 0.002 0.003 0.083 0.226 79 K 0.843 0.004 0.001 0.001 0.034 0.116 80 L 0.935 0.004 0.001 0.001 0.011 0.048 81 V 0.894 0.002 0.001 0.002 0.021 0.080 82 S 0.788 0.009 0.001 0.002 0.036 0.165 83 L 0.385 0.014 0.002 0.003 0.147 0.450 84 D 0.058 0.007 0.002 0.001 0.196 0.737 85 G 0.018 0.009 0.002 0.003 0.217 0.752 86 P 0.019 0.017 0.008 0.011 0.198 0.747 87 A 0.028 0.026 0.013 0.036 0.204 0.694 88 P 0.013 0.005 0.035 0.112 0.230 0.606 89 P 0.006 0.003 0.069 0.521 0.155 0.245 90 K 0.002 0.001 0.056 0.823 0.070 0.048 91 V 0.003 0.005 0.074 0.856 0.045 0.018 92 M 0.004 0.002 0.037 0.900 0.036 0.021 93 K 0.004 0.001 0.023 0.917 0.031 0.025 94 R 0.004 0.002 0.020 0.933 0.022 0.020 95 L 0.004 0.002 0.010 0.936 0.022 0.026 96 S 0.006 0.001 0.014 0.908 0.034 0.037 97 L 0.006 0.001 0.015 0.849 0.054 0.075 98 A 0.003 0.001 0.010 0.883 0.043 0.061 99 L 0.003 0.003 0.016 0.893 0.049 0.035 100 Q 0.003 0.001 0.043 0.777 0.114 0.062 101 K 0.002 0.001 0.075 0.729 0.110 0.083 102 L 0.004 0.006 0.034 0.520 0.130 0.306 103 T 0.003 0.006 0.016 0.306 0.089 0.580 104 E 0.001 0.001 0.001 0.006 0.012 0.981