# TARGET T0343 # Using neural net t06-IDGaaH13-3-13-7-13-9-13-11-ebghtl-stride-seeded.net # This is a 4-layer network, with # window units # 3 13 # 7 13 # 9 13 # 11 6 (1 EBGHTL ) # The input amino acid frequencies were determined from # alignment T0343.t06-thin90.a2m.gz # with weighted counts, using HenikoffWeight(1.3 bits/column, 1) # The weighting was determined by the posterior distribution # after regularizing with /projects/compbio/lib/recode3.20comp. # Counts were regularized to probabilities using # /projects/compbio/lib/recode3.20comp # Total sequence weight for alignment was 3 # Pos AA E B G H T C 10N 1S 5N 5N 5N 5N 5N 5N 1 M 0.011 0.001 0.001 0.035 0.042 0.910 2 T 0.053 0.015 0.001 0.129 0.042 0.761 3 W 0.011 0.001 0.008 0.917 0.019 0.044 4 R 0.010 0.001 0.013 0.937 0.019 0.020 5 E 0.008 0.001 0.013 0.953 0.018 0.007 6 I 0.006 0.001 0.010 0.956 0.016 0.011 7 L 0.002 0.001 0.004 0.971 0.012 0.009 8 R 0.004 0.001 0.007 0.944 0.030 0.014 9 K 0.003 0.001 0.007 0.929 0.037 0.023 10 E 0.005 0.002 0.010 0.724 0.147 0.112 11 G 0.018 0.002 0.014 0.087 0.382 0.497 12 F 0.131 0.019 0.020 0.043 0.213 0.573 13 L 0.472 0.043 0.038 0.044 0.126 0.276 14 D 0.578 0.023 0.026 0.040 0.175 0.157 15 L 0.323 0.008 0.104 0.124 0.395 0.045 16 G 0.188 0.004 0.051 0.032 0.669 0.055 17 E 0.231 0.002 0.033 0.017 0.671 0.045 18 F 0.853 0.006 0.003 0.003 0.105 0.029 19 I 0.982 0.002 0.001 0.001 0.005 0.010 20 V 0.995 0.001 0.001 0.001 0.001 0.003 21 E 0.993 0.001 0.001 0.002 0.001 0.004 22 L 0.985 0.001 0.001 0.004 0.003 0.008 23 V 0.954 0.001 0.001 0.008 0.008 0.029 24 Y 0.924 0.002 0.001 0.010 0.023 0.039 25 I 0.692 0.009 0.004 0.016 0.100 0.179 26 D 0.286 0.013 0.011 0.020 0.281 0.389 27 C 0.113 0.017 0.010 0.010 0.402 0.447 28 P 0.080 0.020 0.017 0.018 0.382 0.482 29 C 0.084 0.040 0.038 0.018 0.412 0.409 30 E 0.096 0.018 0.034 0.016 0.356 0.480 31 P 0.079 0.026 0.031 0.011 0.283 0.569 32 I 0.057 0.030 0.008 0.003 0.197 0.704 33 P 0.073 0.014 0.004 0.001 0.215 0.693 34 P 0.104 0.003 0.005 0.001 0.266 0.621 35 T 0.497 0.005 0.004 0.001 0.140 0.353 36 L 0.948 0.003 0.001 0.001 0.015 0.033 37 A 0.984 0.002 0.001 0.001 0.004 0.010 38 I 0.982 0.001 0.001 0.001 0.004 0.011 39 Y 0.935 0.003 0.001 0.001 0.014 0.046 40 D 0.587 0.009 0.002 0.002 0.245 0.156 41 K 0.094 0.009 0.019 0.004 0.709 0.165 42 K 0.040 0.007 0.036 0.005 0.803 0.109 43 G 0.042 0.009 0.034 0.004 0.832 0.079 44 D 0.095 0.006 0.037 0.005 0.568 0.289 45 E 0.510 0.020 0.023 0.005 0.224 0.218 46 W 0.873 0.018 0.006 0.003 0.035 0.066 47 Y 0.931 0.006 0.002 0.003 0.016 0.043 48 K 0.924 0.004 0.002 0.003 0.018 0.048 49 V 0.834 0.010 0.006 0.006 0.047 0.098 50 E 0.570 0.010 0.008 0.007 0.169 0.236 51 E 0.373 0.021 0.015 0.009 0.220 0.363 52 A 0.126 0.021 0.017 0.011 0.403 0.422 53 P 0.065 0.015 0.047 0.022 0.379 0.472 54 N 0.053 0.023 0.051 0.024 0.385 0.464 55 V 0.043 0.015 0.185 0.104 0.371 0.282 56 Q 0.025 0.007 0.122 0.305 0.272 0.269 57 N 0.037 0.008 0.081 0.488 0.192 0.194 58 Y 0.012 0.002 0.022 0.850 0.049 0.064 59 R 0.015 0.002 0.012 0.887 0.032 0.051 60 E 0.009 0.001 0.012 0.938 0.022 0.018 61 A 0.010 0.001 0.011 0.945 0.016 0.017 62 V 0.002 0.001 0.004 0.985 0.005 0.004 63 E 0.001 0.001 0.003 0.993 0.002 0.001 64 W 0.001 0.001 0.002 0.994 0.002 0.001 65 A 0.001 0.001 0.002 0.993 0.002 0.002 66 I 0.001 0.001 0.003 0.991 0.003 0.002 67 E 0.001 0.001 0.003 0.990 0.004 0.002 68 V 0.002 0.001 0.004 0.981 0.007 0.005 69 L 0.003 0.001 0.005 0.981 0.007 0.004 70 E 0.002 0.001 0.005 0.985 0.006 0.002 71 R 0.003 0.001 0.004 0.984 0.006 0.003 72 I 0.003 0.001 0.005 0.955 0.021 0.015 73 R 0.005 0.004 0.009 0.827 0.112 0.043 74 D 0.005 0.002 0.017 0.585 0.265 0.125 75 G 0.013 0.003 0.027 0.044 0.735 0.178 76 E 0.034 0.008 0.048 0.027 0.640 0.243 77 N 0.118 0.018 0.062 0.018 0.505 0.279 78 V 0.310 0.020 0.042 0.015 0.363 0.249 79 K 0.460 0.013 0.026 0.015 0.145 0.341 80 L 0.708 0.016 0.033 0.017 0.075 0.151 81 V 0.740 0.015 0.018 0.017 0.072 0.138 82 S 0.698 0.018 0.012 0.016 0.097 0.159 83 L 0.433 0.039 0.010 0.026 0.162 0.330 84 D 0.124 0.020 0.009 0.012 0.453 0.382 85 G 0.037 0.007 0.023 0.016 0.537 0.380 86 P 0.025 0.022 0.032 0.028 0.404 0.488 87 A 0.017 0.029 0.017 0.040 0.338 0.560 88 P 0.005 0.006 0.003 0.061 0.123 0.802 89 P 0.001 0.001 0.013 0.919 0.030 0.037 90 K 0.001 0.001 0.010 0.973 0.011 0.005 91 V 0.001 0.001 0.010 0.976 0.010 0.003 92 M 0.004 0.001 0.004 0.975 0.009 0.008 93 K 0.002 0.001 0.003 0.983 0.006 0.005 94 R 0.002 0.001 0.003 0.984 0.006 0.005 95 L 0.002 0.001 0.002 0.985 0.006 0.005 96 S 0.003 0.001 0.003 0.982 0.007 0.005 97 L 0.002 0.001 0.005 0.976 0.011 0.006 98 A 0.002 0.001 0.007 0.941 0.022 0.027 99 L 0.002 0.001 0.013 0.936 0.021 0.026 100 Q 0.006 0.001 0.045 0.876 0.043 0.029 101 K 0.008 0.002 0.045 0.776 0.060 0.110 102 L 0.014 0.006 0.025 0.501 0.076 0.378 103 T 0.006 0.005 0.004 0.297 0.040 0.648 104 E 0.001 0.001 0.001 0.038 0.021 0.940