# List of top-scoring protein chains for T0343.t06-w0.5 hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # # FSSP representative for each protein chain taken from FSSP: # ------------------Citations (FSSP) ----------------------------------- # L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue FSSP-rep SCOP_domain SCOP_suid 5S 5N 12S 6S 12S 10N 1k8kC 372 3.39e+00 b.69.4.1 68308 1zxfA 155 3.55e+00 1s4fA 601 5.55e+00 e.8.1.4 98495 1s48A 609 5.58e+00 e.8.1.4 98475 1zoqA 191 5.76e+00 2ygsA 92 6.86e+00 1cy5A a.77.1.3 18431 1s1nA 68 6.94e+00 3ygsC 95 7.28e+00 1cy5A a.77.1.3 18432 1cy5A 97 7.51e+00 1cy5A a.77.1.3 18430 1cwwA 102 7.72e+00 1cy5A a.77.1.3 18434 1qwtA 255 7.91e+00 b.26.1.3 96501 1j2fA 258 7.95e+00 b.26.1.3 90785 1ndh 272 1.08e+01 1ndh b.43.4.2,c.25.1.1 25662,31552 1lqtA 456 1.22e+01 c.3.1.1,c.4.1.1 74198,74199 1g291 372 1.26e+01 1g291 1umkA 275 1.43e+01 1p4lD 122 1.46e+01 d.169.1.1 94109 1p1zD 120 1.46e+01 d.169.1.1 93906 2d62A 375 1.61e+01 1ja3A 127 1.91e+01 d.169.1.1 71621 1eh2 106 2.10e+01 1eh2 a.39.1.6 17339 1wflA 74 2.24e+01 1vkxA 273 2.51e+01 1a3qA b.1.18.1,b.2.5.3 21941,22454 2ramA 273 2.51e+01 1a3qA b.1.18.1,b.2.5.3 21937,22450 1leiA 274 2.53e+01 b.1.18.1,b.2.5.3 84599,84600 1iknA 286 2.59e+01 1a3qA b.1.18.1,b.2.5.3 21936,22449 966c 157 2.82e+01 1hfc d.92.1.11 40338 1hfc 169 3.06e+01 1hfc d.92.1.11 40335 1nfiA 301 3.09e+01 1a3qA b.1.18.1,b.2.5.3 21942,22455 2fo7A 136 3.14e+01 1ue1A 164 3.20e+01 b.40.4.3 99243 1cgfA 162 3.21e+01 1hfc d.92.1.11 40339 1cge 168 3.39e+01 1hfc d.92.1.11 40336 2fji1 399 3.46e+01 1ckv 141 3.62e+01 1ckv d.137.1.1 41452 3fruA 269 3.75e+01 1agdA b.1.1.2,d.19.1.1 20657,38150 1pzxA 289 3.80e+01 c.119.1.1 95484 1cglA 169 3.86e+01 1hfc d.92.1.11 40341 1gycA 499 4.02e+01 b.6.1.3,b.6.1.3,b.6.1.3 70748,70749,70750 1mozA 183 4.10e+01 c.37.1.8 79368 2a3lA 701 4.16e+01 1na0A 125 4.21e+01 k.38.1.1 85479 1rvxB 160 4.36e+01 h.3.1.1 97938 1p90A 145 4.60e+01 c.55.5.2 94377 2fk0B 181 4.61e+01 2avpA 70 4.67e+01 2fb6A 117 4.68e+01 1kjkA 64 4.68e+01 d.10.1.4 72613 1jsmB 176 4.81e+01 h.3.1.1 63265 2crpA 150 4.93e+01 1na3A 91 4.94e+01 k.38.1.1 85481 1rdqE 350 4.99e+01 d.144.1.7 97314 1ig9A 903 5.02e+01 1clqA c.55.3.5,e.8.1.1 62367,62368 1q9yA 906 5.03e+01 c.55.3.5,e.8.1.1 96336,96337 1ih7A 903 5.13e+01 1clqA c.55.3.5,e.8.1.1 62375,62376 1smhA 350 5.29e+01 d.144.1.7 105757 1wjrA 127 5.42e+01 1qazA 351 5.57e+01 1qazA a.102.3.1 18848 1y74A 57 5.60e+01 2aiaA 203 5.84e+01 1lm6A 215 5.95e+01 d.167.1.1 84628 1e7nA 106 5.95e+01 2bb2 b.11.1.1 23620 1xh9A 350 5.96e+01 1sykA 350 5.96e+01 2aieP 203 5.96e+01 1q62A 350 5.96e+01 d.144.1.7 95956 1ruzI 160 5.97e+01 h.3.1.1 97890 1ruyI 160 5.98e+01 h.3.1.1 97884 1ydrE 350 6.31e+01 1cdkA d.144.1.7 41624 1u7eA 350 6.32e+01 1xh8A 350 6.38e+01 2c1aA 351 6.40e+01 1l3rE 350 6.42e+01 d.144.1.7 73552 2erzE 351 6.44e+01 1rd8B 182 6.44e+01 h.3.1.1 97309 1apmE 350 6.48e+01 1cdkA d.144.1.7 41628 1cdkA 350 6.48e+01 1cdkA d.144.1.7 41620 1ctpE 350 6.49e+01 1cdkA d.144.1.7 41622 1cmkE 351 6.49e+01 1cdkA d.144.1.7 41623 1f8hA 95 6.49e+01 1eh2 a.39.1.6 17336 1q61A 350 6.68e+01 d.144.1.7 95955 2bl1A 172 6.72e+01 1rynA 202 6.72e+01 c.56.3.1 98107 1rybA 212 6.77e+01 c.56.3.1 98098 1u14A 172 6.79e+01 c.51.4.3 107579 1rymA 212 6.81e+01 c.56.3.1 98106 1wjsA 127 6.85e+01 1fj2A 232 7.01e+01 1auoA c.69.1.14 34720 1yvoA 172 7.08e+01 2gnjA 350 7.14e+01 2gngA 350 7.16e+01 2a50A 73 7.50e+01 1spgA 144 7.55e+01 1abwA a.1.1.2 15409 1oj8A 105 7.76e+01 d.5.1.1 103975 1zdrA 164 7.83e+01 1rv0I 160 7.85e+01 h.3.1.1 97896 1jbpE 350 7.92e+01 1cdkA d.144.1.7 62849 1w6vA 141 8.09e+01 1ku0A 388 8.09e+01 c.69.1.18 72994 1zkrA 153 8.12e+01 1gne 232 8.23e+01 1b8xA a.45.1.1,c.47.1.5 17721,33015 1xbsA 149 8.35e+01 1xriA 151 8.38e+01 1r7cA 31 8.58e+01 j.35.1.1 104831 1ywqA 200 8.64e+01 2akcA 230 8.82e+01 1a0i 348 9.00e+01 1a0i b.40.4.6,d.142.2.1 25363,41577