# List of top-scoring protein chains for t06-100-30-stride-ebghtl-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # # FSSP representative for each protein chain taken from FSSP: # ------------------Citations (FSSP) ----------------------------------- # L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue FSSP-rep SCOP_domain SCOP_suid 5S 5N 12S 6S 12S 10N 1dc1A 323 4.01e-01 1dc1A c.52.1.11 33321 2bkrA 212 4.42e-01 2dg5B 190 8.37e-01 1y74A 57 2.07e+00 1vljA 407 2.20e+00 e.22.1.2 108832 1lehA 364 2.83e+00 1bw9A c.2.1.7,c.58.1.1 30268,33916 2g8yA 385 2.86e+00 2ap1A 327 2.88e+00 1rjdA 334 2.94e+00 c.66.1.37 97558 1kcqA 104 3.07e+00 d.109.1.1 68449 2eu9A 355 3.35e+00 2b49A 287 3.45e+00 1hqz1 141 3.50e+00 1vicA 262 3.78e+00 c.68.1.13 100756 1vl4A 447 3.81e+00 d.283.1.1 108718 1gci 269 4.19e+00 1gci c.41.1.1 32503 1p90A 145 4.59e+00 c.55.5.2 94377 1jx4A 352 4.90e+00 d.240.1.1,e.8.1.7 90378,90379 1o2dA 371 5.60e+00 e.22.1.2 86591 2g6bA 180 5.63e+00 1z08A 170 5.63e+00 1zxuA 217 5.78e+00 2cayA 145 7.21e+00 1r6wA 322 7.39e+00 c.1.11.2,d.54.1.1 97165,97166 1euvA 221 7.47e+00 1euvA d.3.1.7 37133 1pme 380 7.74e+00 1hcl d.144.1.7 41653 1c93A 265 7.85e+00 2ebn c.1.8.5 28998 1pgs 314 8.53e+00 1pgs b.121.1.1,b.121.1.1 23653,23654 1uptA 171 8.56e+00 c.37.1.8 99767 1kjkA 64 8.80e+00 d.10.1.4 72613 1wsrA 375 8.86e+00 1hq0A 295 9.40e+00 1hzgA d.194.1.1 61122 1gw5S 142 9.57e+00 d.110.4.2 70633 3cla 213 1.01e+01 3cla c.43.1.1 32610 2h1tA 188 1.02e+01 2ebn 289 1.06e+01 2ebn c.1.8.5 28990 1udxA 416 1.10e+01 b.117.1.1,c.37.1.8,d.242.1.1 99228,99229,99230 1edt 271 1.12e+01 2ebn c.1.8.5 28993 1ofuX 119 1.12e+01 c.37.1.22 86976 1o5kA 306 1.12e+01 c.1.10.1 92504 1p57A 114 1.20e+01 d.170.1.2 94125 1ayoA 130 1.31e+01 1ayoA b.2.4.1 22431 2a10A 125 1.32e+01 1on0A 158 1.35e+01 d.108.1.1 87095 1poiB 260 1.38e+01 1poiB c.124.1.3 34155 1p5dX 463 1.38e+01 c.84.1.1,c.84.1.1,c.84.1.1,d.129.2.1 94138,94139,94140,94141 1to2E 281 1.41e+01 2govA 195 1.42e+01 1txoA 237 1.53e+01 1w15A 153 1.54e+01 b.7.1.2 109041 1ooeA 236 1.55e+01 c.2.1.2 87196 1q8yA 373 1.56e+01 d.144.1.7 96234 1ytqA 204 1.56e+01 1vpjA 192 1.60e+01 1x72A 334 1.66e+01 d.126.1.6 109495 1vg0A 650 1.67e+01 c.3.1.3,d.16.1.6 108596,108597 1pi1A 185 1.67e+01 a.29.7.1 94699 1rybA 212 1.67e+01 c.56.3.1 98098 1hruA 188 1.72e+01 1hruA d.115.1.1 40926 1tuoA 464 1.74e+01 1lqaA 346 1.76e+01 c.1.7.1 84674 1qb5D 99 1.82e+01 b.40.2.1 88357 1wa3A 205 1.82e+01 2az4A 429 1.93e+01 1r0rE 274 1.96e+01 c.41.1.1 96735 1tfr 305 1.99e+01 1tfr a.60.7.1,c.120.1.2 18081,33351 1uwzA 136 2.09e+01 c.97.1.1 108081 1wb4A 297 2.11e+01 2fm8A 135 2.13e+01 1u9tA 354 2.16e+01 1em8A 147 2.18e+01 c.128.1.1 90457 1jm1A 204 2.25e+01 b.33.1.1 71745 1hw6A 278 2.27e+01 1frb c.1.7.1 61296 1x6oA 174 2.27e+01 b.34.5.2,b.40.4.5 109493,109494 1qfjA 232 2.30e+01 1qfjA b.43.4.2,c.25.1.1 25655,31545 2gtrA 261 2.34e+01 1zxfA 155 2.38e+01 1t0iA 191 2.46e+01 c.23.5.4 106209 1odzA 386 2.50e+01 c.1.8.3 86889 1uanA 227 2.52e+01 c.134.1.1 99135 2a5yB 549 2.54e+01 1t1gA 364 2.54e+01 c.41.1.2 106246 4tmkA 213 2.61e+01 5tmpA c.37.1.1 31930 1bif 469 2.62e+01 1bif c.37.1.7,c.60.1.4 31961,34003 1cz6A 25 2.69e+01 j.3.1.3 46072 1y88A 199 2.69e+01 1k2eA 156 2.70e+01 d.113.1.1 72010 1qopA 268 2.72e+01 2tysA c.1.2.4 28570 2cmuA 342 2.75e+01 1svdM 110 2.82e+01 1jhgA 101 2.82e+01 1jhgA a.4.12.1 19009 1yw5A 177 2.83e+01 2b7aA 293 2.86e+01 1bd3A 243 2.86e+01 1bd3A c.61.1.1 34098 1m2dA 110 2.91e+01 c.47.1.11 78476 1z8gA 372 2.91e+01 1nw3A 416 2.93e+01 c.66.1.31 86288 1o22A 170 2.95e+01 d.238.1.1 86557 1o5zA 442 3.00e+01 c.59.1.2,c.72.2.2 92530,92531 1ad1A 266 3.03e+01 1aj2 c.1.21.1 29668 1z2mA 155 3.05e+01 1s7kA 182 3.05e+01 1uyrA 737 3.07e+01 c.14.1.4,c.14.1.4 100188,100189 1ek9A 428 3.10e+01 1ek9A f.5.1.1 43809 5nul 138 3.10e+01 5nul c.23.5.1 31191 1wzaA 488 3.14e+01 1z57A 339 3.15e+01 1s3aA 102 3.17e+01 1mpxA 615 3.18e+01 b.18.1.13,c.69.1.21 85041,85042 1hywA 68 3.20e+01 1hywA d.186.1.1 61425 1vkyA 347 3.21e+01 e.53.1.1 108696 1ua4A 455 3.22e+01 c.72.1.3 99128 1uj0A 62 3.24e+01 b.34.2.1 99449 1lw7A 365 3.28e+01 c.26.1.3,c.37.1.1 74295,74296 1sz2A 332 3.31e+01 1p8xA 344 3.44e+01 d.109.1.1,d.109.1.1,d.109.1.1 94365,94366,94367 1cxqA 162 3.48e+01 1cxqA c.55.3.2 33621 3bamA 213 3.56e+01 1bam c.52.1.3 33288 1m1hA 248 3.58e+01 b.114.1.1,d.58.42.1 78415,78416 1wnaA 131 3.61e+01 1aj2 282 3.62e+01 1aj2 c.1.21.1 29665 1w9cA 321 3.66e+01 1zsoA 164 3.66e+01 1z9zA 60 3.68e+01 1g12A 167 3.70e+01 1ge5A d.92.1.12 60193 2a4hA 126 3.70e+01 1rq2A 382 3.76e+01 c.32.1.1,d.79.2.1 105048,105049 1ptmA 329 3.77e+01 c.77.1.3 95104 1woqA 267 3.79e+01 c.55.1.10,c.55.1.10 109462,109463 1ckaA 57 3.81e+01 1ckaA b.34.2.1 24459 1id1A 153 3.86e+01 1id1A c.2.1.9 62286 1k4nA 192 3.88e+01 d.32.1.5 72059 1nriA 306 3.99e+01 c.80.1.3 86123 1ne9A 335 4.01e+01 d.108.1.4,d.108.1.4 91839,91840 1q52A 314 4.03e+01 c.14.1.3 95846 1nrjB 218 4.03e+01 c.37.1.8 86125 3il8 72 4.10e+01 1tvxA d.9.1.1 37356 1bqcA 302 4.12e+01 1bqcA c.1.8.3 28831 1zgkA 308 4.24e+01 1wrmA 165 4.25e+01 1ae9A 179 4.25e+01 1ae9A d.163.1.1 42153 1ttwA 138 4.25e+01 d.198.1.1 107308 1wtaA 275 4.26e+01 1acf 125 4.26e+01 3nul d.110.1.1 40882 2a8eA 220 4.27e+01 1geeA 261 4.27e+01 c.2.1.2 90509 1ztpA 251 4.31e+01 1qj4A 257 4.49e+01 1qj4A c.69.1.20 34796 1zo0A 126 4.51e+01 1m4jA 142 4.60e+01 d.109.1.2 78602 2beiA 170 4.69e+01 1yb3A 175 4.73e+01 1wosA 364 4.77e+01 b.44.2.1,d.250.1.1 109468,109469 1lnsA 763 4.77e+01 a.40.2.1,b.18.1.13,c.69.1.21 78101,78102,78103 2gx9A 129 4.80e+01 1otgA 125 4.80e+01 1otgA d.80.1.2 39831 1qxoA 388 4.86e+01 d.258.1.1 96539 1nnwA 252 4.87e+01 d.159.1.5 80674 1bjt 793 4.92e+01 1bjt e.11.1.1 43249 2g2cA 167 4.95e+01 1mqeA 207 4.96e+01 d.113.1.1 91394 2f7tA 227 4.98e+01 1xt8A 292 5.05e+01 2f7fA 494 5.10e+01 1ec7A 446 5.17e+01 1bqg c.1.11.2,d.54.1.1 29218,38862 1jz8A 1023 5.22e+01 b.1.4.1,b.1.4.1,b.18.1.5,b.30.5.1,c.1.8.3 67830,67831,67832,67833,67834 1gp0A 143 5.25e+01 b.64.1.1 70300 1u0mA 382 5.34e+01 c.95.1.2,c.95.1.2 107557,107558 1u7zA 226 5.34e+01 1xknA 355 5.34e+01 1jl0A 334 5.39e+01 1jenA d.156.1.1 63155 1wy5A 317 5.47e+01 2b0aA 186 5.63e+01 2djkA 133 5.65e+01 1u04A 771 5.68e+01 b.34.14.1,c.55.3.10 107539,107540 1vfsA 386 5.73e+01 b.49.2.2,c.1.6.1 108584,108585 1eo1A 124 5.88e+01 1eo1A c.55.5.1 33739 1tuzA 118 5.99e+01 1kfcA 268 6.04e+01 c.1.2.4 77371 1t95A 240 6.14e+01 a.5.8.1,d.235.1.2,d.58.11.3 106705,106706,106707 1zcbA 362 6.16e+01 1ydgA 211 6.16e+01 1e8yA 966 6.24e+01 1e8xA a.118.1.6,b.7.1.1,d.15.1.5,d.144.1.4 19152,23187,37635,41715 1puoA 170 6.34e+01 a.101.1.1,a.101.1.1 95134,95135 1qhtA 775 6.35e+01 1tgoA c.55.3.5,e.8.1.1 33722,43011 1jlvA 209 6.36e+01 a.45.1.1,c.47.1.5 71729,71730 1cq3A 233 6.37e+01 1cq3A b.27.1.1 23923 2ajrA 331 6.37e+01 1t46A 313 6.41e+01 d.144.1.7 106397 1qz9A 416 6.49e+01 c.67.1.3 96621 1bdfA 235 6.53e+01 1bdfA d.74.3.1,d.181.1.1 39727,42602 1h0hA 977 6.57e+01 b.52.2.2,c.81.1.1 76435,76436 1xngA 268 6.71e+01 1va4A 279 6.76e+01 c.69.1.12 108458 2f57A 317 6.77e+01 1x8qA 184 7.00e+01 1r7cA 31 7.03e+01 j.35.1.1 104831 2ag4A 164 7.13e+01 2fb1A 226 7.19e+01 1m2oA 768 7.22e+01 a.71.2.1,b.2.8.1,c.62.1.2,d.109.2.1,g.41.10.1 78480,78481,78482,78483,78484 1zg2A 107 7.24e+01 1wrjA 156 7.25e+01 1ye8A 178 7.30e+01 1lam 484 7.36e+01 1lam c.50.1.1,c.56.5.3 33166,33829 2alaA 391 7.41e+01 1m7bA 184 7.61e+01 c.37.1.8 74572 2d00A 109 7.78e+01 1toaA 313 7.84e+01 1toaA c.92.2.2 35598 1tbfA 347 7.89e+01 a.211.1.2 106743 1sqhA 312 7.91e+01 d.108.1.5 98966 2b6nA 278 8.02e+01 1i88A 389 8.02e+01 c.95.1.2,c.95.1.2 66070,66071 1dxeA 256 8.05e+01 1dxeA c.1.12.5 29310 1e7uA 961 8.07e+01 1e8xA a.118.1.6,b.7.1.1,d.15.1.5,d.144.1.4 19147,23182,37630,41710 1unqA 125 8.07e+01 b.55.1.1 107968 2furA 209 8.10e+01 1jbwA 428 8.22e+01 c.59.1.2,c.72.2.2 62860,62861 1u59A 287 8.23e+01 d.144.1.7 107681 1z83A 196 8.28e+01 1z6mA 175 8.36e+01 1uheA 97 8.39e+01 1epxA 370 8.40e+01 1fbaA c.1.10.1 29150 1xteA 154 8.43e+01 1mtzA 293 8.46e+01 c.69.1.7 79467 1xwyA 264 8.50e+01 1pbyB 337 8.50e+01 b.69.2.2 94422 1wdnA 226 8.51e+01 1lst c.94.1.1 35816 1rz2A 254 8.58e+01 b.100.1.1 105130 2c78A 405 8.78e+01 1yqtA 538 8.82e+01 1b5eA 246 8.83e+01 1b5eA d.117.1.1 41056 1thm 279 8.92e+01 1gci c.41.1.1 32544