# List of top-scoring protein chains for t06-100-30-dssp-ehl2-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # # FSSP representative for each protein chain taken from FSSP: # ------------------Citations (FSSP) ----------------------------------- # L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue FSSP-rep SCOP_domain SCOP_suid 5S 5N 12S 6S 12S 10N 1udxA 416 5.95e-01 b.117.1.1,c.37.1.8,d.242.1.1 99228,99229,99230 1i88A 389 2.13e+00 c.95.1.2,c.95.1.2 66070,66071 2b49A 287 2.46e+00 1y74A 57 2.61e+00 2h1tA 188 2.70e+00 1jx4A 352 2.91e+00 d.240.1.1,e.8.1.7 90378,90379 1dc1A 323 3.02e+00 1dc1A c.52.1.11 33321 2dg5B 190 3.14e+00 2g8yA 385 3.17e+00 1hq0A 295 3.20e+00 1hzgA d.194.1.1 61122 2ap1A 327 3.50e+00 1p90A 145 3.81e+00 c.55.5.2 94377 1lehA 364 5.29e+00 1bw9A c.2.1.7,c.58.1.1 30268,33916 1rjdA 334 5.31e+00 c.66.1.37 97558 2bkrA 212 5.61e+00 1y88A 199 5.75e+00 1ckaA 57 6.01e+00 1ckaA b.34.2.1 24459 1zxuA 217 6.07e+00 2eu9A 355 6.50e+00 1gci 269 6.50e+00 1gci c.41.1.1 32503 1p57A 114 7.13e+00 d.170.1.2 94125 1gw5S 142 7.18e+00 d.110.4.2 70633 1r6wA 322 7.32e+00 c.1.11.2,d.54.1.1 97165,97166 1nriA 306 7.61e+00 c.80.1.3 86123 1euvA 221 7.61e+00 1euvA d.3.1.7 37133 2az4A 429 7.65e+00 1kjkA 64 7.91e+00 d.10.1.4 72613 1kcqA 104 8.22e+00 d.109.1.1 68449 5nul 138 8.22e+00 5nul c.23.5.1 31191 2g6bA 180 8.63e+00 1o2dA 371 8.80e+00 e.22.1.2 86591 2fm8A 135 8.91e+00 1oltA 457 9.14e+00 c.1.28.2 93334 1uwzA 136 9.20e+00 c.97.1.1 108081 1q8yA 373 9.24e+00 d.144.1.7 96234 2cayA 145 9.76e+00 1xwyA 264 9.78e+00 2a10A 125 9.99e+00 1u7zA 226 1.01e+01 1w15A 153 1.02e+01 b.7.1.2 109041 1ayoA 130 1.09e+01 1ayoA b.2.4.1 22431 1vicA 262 1.15e+01 c.68.1.13 100756 2f7tA 227 1.18e+01 1ofuX 119 1.19e+01 c.37.1.22 86976 1wrmA 165 1.19e+01 1pme 380 1.25e+01 1hcl d.144.1.7 41653 1wsrA 375 1.25e+01 1zxfA 155 1.29e+01 1t0iA 191 1.39e+01 c.23.5.4 106209 1vljA 407 1.48e+01 e.22.1.2 108832 1hw6A 278 1.57e+01 1frb c.1.7.1 61296 1on0A 158 1.57e+01 d.108.1.1 87095 1lba 146 1.58e+01 1lba d.118.1.1 41062 1o5kA 306 1.58e+01 c.1.10.1 92504 1lzlA 323 1.62e+01 c.69.1.2 78306 1yw5A 177 1.67e+01 1lqaA 346 1.69e+01 c.1.7.1 84674 1hruA 188 1.69e+01 1hruA d.115.1.1 40926 1vl4A 447 1.76e+01 d.283.1.1 108718 1uanA 227 1.76e+01 c.134.1.1 99135 1odzA 386 1.83e+01 c.1.8.3 86889 1txoA 237 1.84e+01 1x6oA 174 1.88e+01 b.34.5.2,b.40.4.5 109493,109494 1r0rE 274 1.92e+01 c.41.1.1 96735 1ne9A 335 1.95e+01 d.108.1.4,d.108.1.4 91839,91840 1vbkA 307 1.96e+01 1jl0A 334 1.98e+01 1jenA d.156.1.1 63155 1r31A 428 2.00e+01 d.58.20.1,d.179.1.1 96897,96898 1pch 88 2.01e+01 1ptf d.94.1.1 40564 1qopA 268 2.05e+01 2tysA c.1.2.4 28570 1svdM 110 2.06e+01 1geeA 261 2.11e+01 c.2.1.2 90509 1jm1A 204 2.14e+01 b.33.1.1 71745 1to2E 281 2.15e+01 1d7uA 433 2.19e+01 2dkb c.67.1.4 34439 2gtrA 261 2.21e+01 3cla 213 2.31e+01 3cla c.43.1.1 32610 1z8gA 372 2.36e+01 1p5dX 463 2.36e+01 c.84.1.1,c.84.1.1,c.84.1.1,d.129.2.1 94138,94139,94140,94141 4tmkA 213 2.39e+01 5tmpA c.37.1.1 31930 1wb4A 297 2.39e+01 1noyA 388 2.41e+01 1clqA c.55.3.5 33713 1kfcA 268 2.42e+01 c.1.2.4 77371 1uj0A 62 2.44e+01 b.34.2.1 99449 1poiB 260 2.48e+01 1poiB c.124.1.3 34155 1pi1A 185 2.51e+01 a.29.7.1 94699 1z08A 170 2.59e+01 1z2mA 155 2.59e+01 1rypA 243 2.65e+01 1pmaA d.153.1.4 41932 1ek9A 428 2.70e+01 1ek9A f.5.1.1 43809 1xteA 154 2.70e+01 1qb5D 99 2.73e+01 b.40.2.1 88357 1mpxA 615 2.74e+01 b.18.1.13,c.69.1.21 85041,85042 1unqA 125 2.76e+01 b.55.1.1 107968 1z9zA 60 2.87e+01 2g2cA 167 2.89e+01 1ooeA 236 2.93e+01 c.2.1.2 87196 1xb4A 202 2.94e+01 1s3aA 102 2.96e+01 1kid 203 3.16e+01 1derA c.8.5.1 30771 1wa3A 205 3.18e+01 1q0pA 223 3.24e+01 c.62.1.1 95507 1em8A 147 3.28e+01 c.128.1.1 90457 1pgs 314 3.39e+01 1pgs b.121.1.1,b.121.1.1 23653,23654 1aj2 282 3.39e+01 1aj2 c.1.21.1 29665 1jhgA 101 3.41e+01 1jhgA a.4.12.1 19009 1tuoA 464 3.43e+01 1rybA 212 3.44e+01 c.56.3.1 98098 1nw3A 416 3.47e+01 c.66.1.31 86288 2fpeA 62 3.57e+01 2b7aA 293 3.60e+01 1w9cA 321 3.64e+01 1qxoA 388 3.76e+01 d.258.1.1 96539 1z6nA 167 3.76e+01 1ttwA 138 3.84e+01 d.198.1.1 107308 2cvbA 188 3.94e+01 1vg0A 650 3.98e+01 c.3.1.3,d.16.1.6 108596,108597 1p8xA 344 4.02e+01 d.109.1.1,d.109.1.1,d.109.1.1 94365,94366,94367 1ua4A 455 4.06e+01 c.72.1.3 99128 1wdnA 226 4.17e+01 1lst c.94.1.1 35816 1vpjA 192 4.19e+01 1tfr 305 4.19e+01 1tfr a.60.7.1,c.120.1.2 18081,33351 1e8yA 966 4.24e+01 1e8xA a.118.1.6,b.7.1.1,d.15.1.5,d.144.1.4 19152,23187,37635,41715 2beiA 170 4.35e+01 1bdfA 235 4.48e+01 1bdfA d.74.3.1,d.181.1.1 39727,42602 1hqz1 141 4.56e+01 1uptA 171 4.59e+01 c.37.1.8 99767 1x72A 334 4.59e+01 d.126.1.6 109495 1zsoA 164 4.71e+01 1zkrA 153 4.72e+01 1bd3A 243 4.76e+01 1bd3A c.61.1.1 34098 1hywA 68 4.78e+01 1hywA d.186.1.1 61425 1edt 271 4.88e+01 2ebn c.1.8.5 28993 1c93A 265 4.93e+01 2ebn c.1.8.5 28998 1wguA 136 4.98e+01 2b6nA 278 5.03e+01 1sy7A 715 5.03e+01 1id1A 153 5.04e+01 1id1A c.2.1.9 62286 2govA 195 5.04e+01 1lnsA 763 5.06e+01 a.40.2.1,b.18.1.13,c.69.1.21 78101,78102,78103 1acf 125 5.07e+01 3nul d.110.1.1 40882 1k0fA 277 5.10e+01 c.92.2.2 71974 1x8qA 184 5.11e+01 2a5yB 549 5.13e+01 1lam 484 5.20e+01 1lam c.50.1.1,c.56.5.3 33166,33829 1m4jA 142 5.20e+01 d.109.1.2 78602 1xkzA 255 5.25e+01 1yd0A 96 5.34e+01 1o1zA 234 5.36e+01 c.1.18.3 86555 1t1gA 364 5.41e+01 c.41.1.2 106246 2djkA 133 5.45e+01 2cfuA 658 5.47e+01 2ebn 289 5.65e+01 2ebn c.1.8.5 28990 1uheA 97 5.66e+01 1u0mA 382 5.69e+01 c.95.1.2,c.95.1.2 107557,107558 1lvwA 295 5.70e+01 c.68.1.6 84723 1nrjB 218 5.73e+01 c.37.1.8 86125 1ad1A 266 5.76e+01 1aj2 c.1.21.1 29668 1woqA 267 5.79e+01 c.55.1.10,c.55.1.10 109462,109463 1wnaA 131 5.86e+01 1rxdA 159 5.96e+01 2gf9A 189 5.98e+01 1z57A 339 5.98e+01 2d00A 109 6.07e+01 1qhtA 775 6.07e+01 1tgoA c.55.3.5,e.8.1.1 33722,43011 2bo9A 308 6.11e+01 2b81A 323 6.23e+01 2a7kA 250 6.25e+01 1frb 315 6.25e+01 1frb c.1.7.1 28665 1cz6A 25 6.28e+01 j.3.1.3 46072 1wy5A 317 6.29e+01 1z47A 355 6.29e+01 1yqtA 538 6.32e+01 2gkeA 274 6.32e+01 1f53A 84 6.36e+01 1f53A b.11.1.4 23632 1qz9A 416 6.38e+01 c.67.1.3 96621 1gqzA 274 6.38e+01 d.21.1.1,d.21.1.1 83311,83312 1qc7A 101 6.39e+01 1qc7A a.118.14.1 18456 1g12A 167 6.39e+01 1ge5A d.92.1.12 60193 2f57A 317 6.47e+01 2bjfA 329 6.48e+01 1sd4A 126 6.49e+01 a.4.5.39 105428 2gx9A 129 6.52e+01 1o22A 170 6.53e+01 d.238.1.1 86557 1xrtA 467 6.54e+01 1k2eA 156 6.72e+01 d.113.1.1 72010 1nnwA 252 6.89e+01 d.159.1.5 80674 1mi3A 322 6.90e+01 c.1.7.1 91274 1vraB 215 7.01e+01 1zczA 464 7.05e+01 1ec7A 446 7.06e+01 1bqg c.1.11.2,d.54.1.1 29218,38862 1spgA 144 7.21e+01 1abwA a.1.1.2 15409 1xd5A 112 7.25e+01 2cmuA 342 7.26e+01 1us0A 316 7.29e+01 c.1.7.1 99850 1vkmA 297 7.35e+01 c.138.1.1 108670 1x88A 359 7.38e+01 1zo0A 126 7.47e+01 2ex3B 264 7.48e+01 1wrjA 156 7.52e+01 1va4A 279 7.57e+01 c.69.1.12 108458 2a4hA 126 7.60e+01 1hziA 129 7.67e+01 1rcb a.26.1.2 61449 1j0dA 341 7.69e+01 c.79.1.1 83902 1ivnA 190 7.69e+01 c.23.10.5 83719 2f2hA 773 7.76e+01 1xfkA 336 7.79e+01 1xviA 275 7.81e+01 1ae9A 179 7.81e+01 1ae9A d.163.1.1 42153 1mp8A 281 7.83e+01 d.144.1.7 91384 1eo1A 124 7.85e+01 1eo1A c.55.5.1 33739 1ytqA 204 7.91e+01 3il8 72 7.93e+01 1tvxA d.9.1.1 37356 1zpyA 95 7.99e+01 1b5eA 246 8.05e+01 1b5eA d.117.1.1 41056 1tmxA 293 8.08e+01 1ob8A 135 8.09e+01 1vpqA 273 8.11e+01 1cxqA 162 8.20e+01 1cxqA c.55.3.2 33621 1svy 114 8.28e+01 1svy d.109.1.1 40831 2d48A 129 8.30e+01 1n7eA 97 8.30e+01 b.36.1.1 91691 1v5vA 401 8.40e+01 1m2dA 110 8.44e+01 c.47.1.11 78476 1ydgA 211 8.46e+01 1s7kA 182 8.57e+01 1r7cA 31 8.60e+01 j.35.1.1 104831 1zo2A 129 8.60e+01 1nrjA 158 8.64e+01 d.110.4.4 86124 1dpjA 329 8.67e+01 1smrA b.50.1.2 26828 1o5zA 442 8.68e+01 c.59.1.2,c.72.2.2 92530,92531 1toaA 313 8.69e+01 1toaA c.92.2.2 35598 1bif 469 8.72e+01 1bif c.37.1.7,c.60.1.4 31961,34003 1rlzA 369 8.77e+01 c.31.1.1 104989 2alaA 391 8.87e+01 1xjdA 345 8.87e+01 1dbiA 280 8.91e+01 1gci c.41.1.1 32543 1gpmA 525 8.96e+01 1gpmA c.23.16.1,c.26.2.1,d.52.2.1 31405,31608,38826 1e19A 314 9.00e+01 1b7bA c.73.1.1 34967