Best Alignments for T0343

To select the top models, SAM generates pairwise alignments of the target sequence and the best-scoring templates. The alignments with the best E-values are presented here.

Warning: E-values smaller than about 0.001 may be overly optimistic.

A2M alignment AL alignment Template E-value Alignment cost FSSP rep SCOP Domain(s)
2ap1A/T0343-2ap1A-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m 2ap1A/T0343-2ap1A-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.al 6.6621e+001.36e-08
1p90A/T0343-1p90A-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m 1p90A/T0343-1p90A-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.al 6.7504e+005.89e-09 c.55.5.2
2ygsA/T0343-2ygsA-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m 2ygsA/T0343-2ygsA-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.al 6.9600e+001.87e+00 1cy5A a.77.1.3
2b49A/T0343-2b49A-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m 2b49A/T0343-2b49A-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.al 7.1973e+007.32e-07
1hq0A/T0343-1hq0A-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m 1hq0A/T0343-1hq0A-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.al 8.8802e+006.97e-08 1hzgA d.194.1.1
1ofuX/T0343-1ofuX-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m 1ofuX/T0343-1ofuX-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.al 9.6029e+002.24e-11 c.37.1.22
1yw5A/T0343-1yw5A-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m 1yw5A/T0343-1yw5A-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.al 9.9501e+001.94e-08
2bkrA/T0343-2bkrA-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m 2bkrA/T0343-2bkrA-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.al 1.0253e+011.71e-06
1wbpA/T0343-1wbpA-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m 1wbpA/T0343-1wbpA-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.al 1.0523e+017.67e-11
3cla/T0343-3cla-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m 3cla/T0343-3cla-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.al 1.1991e+011.06e-05 3cla c.43.1.1

Please cite: Karplus, K. and Karchin, R. and Barrett, C. and Tu, S. and Cline, M. and Diekhans, M. and Grate, L. and Casper, J. and Hughey, R. ``What is the value added by human intervention in protein structure prediction?'' Proteins: Structure Function and Genetics 45(S5):86-91,2001