# TARGET T0343 # Using neural net t04-2621-IDGaaH13-3-13-7-13-9-13-11-ebghtl-stride-seeded.net # This is a 4-layer network, with # window units # 3 13 # 7 13 # 9 13 # 11 6 (1 EBGHTL ) # The input amino acid frequencies were determined from # alignment T0343.t04-thin90.a2m.gz # with weighted counts, using HenikoffWeight(1.3 bits/column, 1) # The weighting was determined by the posterior distribution # after regularizing with /projects/compbio/lib/recode3.20comp. # Counts were regularized to probabilities using # /projects/compbio/lib/recode3.20comp # Total sequence weight for alignment was 3 # Pos AA E B G H T C 10N 1S 5N 5N 5N 5N 5N 5N 1 M 0.008 0.005 0.001 0.021 0.074 0.890 2 T 0.016 0.012 0.001 0.174 0.040 0.758 3 W 0.002 0.001 0.002 0.975 0.005 0.015 4 R 0.001 0.001 0.001 0.995 0.001 0.002 5 E 0.001 0.001 0.001 0.995 0.002 0.001 6 I 0.002 0.001 0.002 0.993 0.002 0.001 7 L 0.001 0.001 0.001 0.994 0.002 0.001 8 R 0.001 0.001 0.003 0.985 0.010 0.002 9 K 0.001 0.001 0.004 0.958 0.029 0.008 10 E 0.001 0.001 0.005 0.843 0.118 0.032 11 G 0.014 0.004 0.006 0.069 0.418 0.489 12 F 0.069 0.011 0.004 0.006 0.121 0.790 13 L 0.416 0.062 0.018 0.012 0.123 0.369 14 D 0.511 0.021 0.036 0.015 0.197 0.220 15 L 0.295 0.009 0.212 0.057 0.330 0.096 16 G 0.173 0.002 0.133 0.014 0.575 0.103 17 E 0.409 0.004 0.053 0.005 0.441 0.088 18 F 0.916 0.005 0.002 0.001 0.037 0.039 19 I 0.988 0.001 0.001 0.001 0.003 0.007 20 V 0.997 0.001 0.001 0.001 0.001 0.002 21 E 0.996 0.001 0.001 0.001 0.001 0.003 22 L 0.989 0.001 0.001 0.001 0.002 0.009 23 V 0.978 0.001 0.001 0.001 0.004 0.017 24 Y 0.959 0.001 0.001 0.001 0.011 0.028 25 I 0.836 0.005 0.001 0.003 0.047 0.108 26 D 0.429 0.011 0.004 0.005 0.275 0.276 27 C 0.139 0.019 0.008 0.004 0.470 0.360 28 P 0.076 0.018 0.022 0.006 0.513 0.366 29 C 0.094 0.024 0.056 0.007 0.427 0.393 30 E 0.105 0.016 0.041 0.006 0.362 0.470 31 P 0.093 0.014 0.042 0.007 0.293 0.551 32 I 0.052 0.017 0.010 0.002 0.180 0.739 33 P 0.044 0.009 0.002 0.001 0.213 0.731 34 P 0.077 0.004 0.008 0.001 0.268 0.643 35 T 0.515 0.005 0.004 0.001 0.134 0.341 36 L 0.971 0.001 0.001 0.001 0.011 0.015 37 A 0.994 0.001 0.001 0.001 0.002 0.004 38 I 0.994 0.001 0.001 0.001 0.001 0.003 39 Y 0.968 0.001 0.001 0.001 0.008 0.022 40 D 0.715 0.003 0.001 0.001 0.119 0.161 41 K 0.235 0.011 0.005 0.002 0.553 0.194 42 K 0.095 0.014 0.020 0.003 0.706 0.162 43 G 0.071 0.011 0.025 0.004 0.779 0.110 44 D 0.136 0.005 0.023 0.004 0.602 0.230 45 E 0.621 0.010 0.013 0.004 0.152 0.200 46 W 0.934 0.008 0.003 0.003 0.018 0.035 47 Y 0.960 0.004 0.001 0.004 0.007 0.024 48 K 0.958 0.002 0.001 0.004 0.009 0.026 49 V 0.846 0.006 0.003 0.005 0.040 0.100 50 E 0.580 0.008 0.007 0.006 0.191 0.208 51 E 0.281 0.014 0.022 0.009 0.389 0.285 52 A 0.094 0.013 0.021 0.007 0.483 0.382 53 P 0.066 0.026 0.026 0.011 0.378 0.492 54 N 0.050 0.024 0.023 0.010 0.367 0.526 55 V 0.030 0.015 0.209 0.092 0.450 0.204 56 Q 0.043 0.010 0.132 0.204 0.389 0.222 57 N 0.051 0.009 0.089 0.393 0.249 0.209 58 Y 0.036 0.006 0.016 0.743 0.069 0.130 59 R 0.025 0.003 0.008 0.889 0.025 0.050 60 E 0.017 0.002 0.010 0.934 0.020 0.018 61 A 0.019 0.002 0.011 0.925 0.017 0.026 62 V 0.003 0.001 0.003 0.986 0.003 0.005 63 E 0.001 0.001 0.002 0.995 0.001 0.001 64 W 0.001 0.001 0.002 0.996 0.001 0.001 65 A 0.001 0.001 0.002 0.996 0.001 0.001 66 I 0.001 0.001 0.002 0.996 0.001 0.001 67 E 0.001 0.001 0.002 0.995 0.001 0.001 68 V 0.001 0.001 0.002 0.994 0.002 0.002 69 L 0.001 0.001 0.002 0.995 0.001 0.001 70 E 0.001 0.001 0.005 0.992 0.002 0.001 71 R 0.001 0.001 0.004 0.992 0.003 0.001 72 I 0.002 0.001 0.004 0.972 0.013 0.009 73 R 0.004 0.004 0.007 0.870 0.083 0.033 74 D 0.003 0.002 0.010 0.610 0.243 0.131 75 G 0.007 0.005 0.011 0.037 0.727 0.214 76 E 0.021 0.010 0.027 0.022 0.657 0.263 77 N 0.094 0.012 0.031 0.012 0.530 0.322 78 V 0.337 0.018 0.033 0.009 0.378 0.226 79 K 0.487 0.010 0.021 0.007 0.162 0.314 80 L 0.796 0.020 0.016 0.005 0.048 0.114 81 V 0.822 0.019 0.011 0.007 0.041 0.100 82 S 0.757 0.027 0.011 0.006 0.059 0.140 83 L 0.466 0.030 0.014 0.009 0.154 0.327 84 D 0.131 0.015 0.017 0.007 0.422 0.409 85 G 0.031 0.010 0.012 0.005 0.527 0.416 86 P 0.014 0.021 0.013 0.010 0.372 0.568 87 A 0.008 0.032 0.006 0.015 0.274 0.665 88 P 0.003 0.008 0.002 0.036 0.167 0.784 89 P 0.001 0.001 0.010 0.922 0.026 0.042 90 K 0.001 0.001 0.005 0.984 0.006 0.004 91 V 0.001 0.001 0.003 0.993 0.002 0.001 92 M 0.001 0.001 0.002 0.993 0.002 0.002 93 K 0.001 0.001 0.002 0.993 0.003 0.001 94 R 0.001 0.001 0.002 0.994 0.002 0.001 95 L 0.001 0.001 0.002 0.993 0.002 0.003 96 S 0.001 0.001 0.002 0.991 0.003 0.003 97 L 0.001 0.001 0.003 0.988 0.005 0.004 98 A 0.002 0.001 0.005 0.967 0.010 0.016 99 L 0.001 0.001 0.009 0.970 0.009 0.010 100 Q 0.004 0.001 0.026 0.929 0.023 0.019 101 K 0.005 0.001 0.022 0.889 0.030 0.053 102 L 0.007 0.004 0.010 0.716 0.039 0.224 103 T 0.006 0.006 0.002 0.235 0.048 0.703 104 E 0.003 0.001 0.001 0.046 0.041 0.908