# List of top-scoring protein chains for t04-100-30-CB_burial_14_7-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # # FSSP representative for each protein chain taken from FSSP: # ------------------Citations (FSSP) ----------------------------------- # L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue FSSP-rep SCOP_domain SCOP_suid 5S 5N 12S 6S 12S 10N 1y0uA 96 6.55e-01 1kjkA 64 1.66e+00 d.10.1.4 72613 1cy5A 97 2.36e+00 1cy5A a.77.1.3 18430 1t5eA 360 2.74e+00 f.46.1.1 106436 1r6xA 395 2.88e+00 b.122.1.3,c.26.1.5 97167,97168 1vf7A 369 3.75e+00 f.46.1.1 108557 1zxfA 155 4.21e+00 1spgA 144 5.43e+00 1abwA a.1.1.2 15409 1g291 372 6.61e+00 1g291 2ak3A 226 7.41e+00 1zin c.37.1.1,g.41.2.1 31892,45193 1g8fA 511 7.61e+00 1g8fA b.122.1.3,c.26.1.5,c.37.1.15 60348,60349,60350 1om2A 95 8.10e+00 1om2A a.23.4.1 16520 2bt2A 161 1.01e+01 1z83A 196 1.20e+01 1na3A 91 1.36e+01 k.38.1.1 85481 1qo3C 137 1.39e+01 1qo3C d.169.1.1 42350 1vkjA 285 1.41e+01 c.37.1.5 108666 1oj7A 408 1.42e+01 e.22.1.2 103971 1pch 88 1.52e+01 1ptf d.94.1.1 40564 1z5sD 83 1.56e+01 1rec 201 1.62e+01 1rec a.39.1.5 17326 1ndh 272 1.86e+01 1ndh b.43.4.2,c.25.1.1 25662,31552 1gz6A 319 1.92e+01 c.2.1.2 76410 2a50A 73 1.98e+01 1umkA 275 2.19e+01 1u9lA 70 2.19e+01 a.60.4.2 107751 1dfuP 94 2.53e+01 1dfuP b.53.1.1 26936 1eg2A 319 2.58e+01 1eg2A c.66.1.11 34249 1v38A 78 2.59e+01 a.60.1.2 100280 1fbr 93 2.60e+01 1fbr g.27.1.1,g.27.1.1 44948,44949 1xd5A 112 2.60e+01 1zsoA 164 2.63e+01 1f9aA 168 2.63e+01 1f9aA c.26.1.3 31602 2bf6A 449 2.66e+01 1ia8A 289 2.69e+01 1ia8A d.144.1.7 62112 1h6qA 168 2.78e+01 1h6qA b.88.1.2 60692 1ujrA 110 2.84e+01 1omrA 201 2.85e+01 a.39.1.5 93349 1fna 93 2.88e+01 1fnf b.1.2.1 21971 1t0fA 276 2.91e+01 1smoA 119 2.91e+01 b.1.1.1 105764 1lm8V 160 2.94e+01 b.3.3.1 74035 1tr8A 102 2.97e+01 1p90A 145 3.02e+01 c.55.5.2 94377 1dkzA 219 3.04e+01 1dkzA a.8.4.1,b.130.1.1 90345,90346 1i7dA 659 3.17e+01 1d6mA e.10.1.1 61886 2bibA 547 3.22e+01 1914 232 3.22e+01 1914 d.49.1.1,d.49.1.1 83028,83029 1orjA 130 3.24e+01 a.24.19.1 93456 1vcbC 160 3.26e+01 1vcbC b.3.3.1 22535 1pu5A 164 3.34e+01 b.95.1.1 104310 1f53A 84 3.35e+01 1f53A b.11.1.4 23632 1vheA 373 3.38e+01 b.49.3.1,c.56.5.4 100669,100670 2bnxA 386 3.50e+01 1zdrA 164 3.52e+01 1ytqA 204 3.52e+01 1d3bB 91 3.60e+01 1d3bB b.38.1.1 24804 1jpc 109 3.64e+01 1b2pA b.78.1.1 27986 1xriA 151 3.65e+01 1w8iA 156 3.67e+01 1xbsA 149 3.68e+01 1sqlA 146 3.71e+01 d.96.1.3 105925 1jhdA 396 3.95e+01 b.122.1.3,c.26.1.5 66712,66713 1zd8A 227 4.04e+01 2avpA 70 4.15e+01 1jhgA 101 4.22e+01 1jhgA a.4.12.1 19009 1zxuA 217 4.38e+01 1v1rB 342 4.43e+01 c.36.1.7,c.48.1.2 108273,108274 1dtwB 342 4.56e+01 1qs0B c.36.1.7,c.48.1.2 31828,33102 1xb4A 202 4.57e+01 1i7pA 274 4.65e+01 b.43.4.2,c.25.1.1 66048,66049 1g7nA 131 4.78e+01 b.60.1.2 83274 2ag4A 164 4.83e+01 1cskA 71 4.89e+01 1ckaA b.34.2.1 24513 1v4eA 299 4.92e+01 a.128.1.1 100296 2ag9A 164 5.01e+01 1z2cB 383 5.17e+01 1z9zA 60 5.18e+01 1olsB 342 5.18e+01 c.36.1.7,c.48.1.2 93332,93333 1ubeA 349 5.21e+01 c.37.1.11,d.48.1.1 88412,88413 1zkrA 153 5.23e+01 1ukz 203 5.54e+01 1zin c.37.1.1 31840 1rz2A 254 5.57e+01 b.100.1.1 105130 1opc 110 5.64e+01 1opc a.4.6.1 16231 1g13A 162 5.65e+01 1g13A b.95.1.1 60194 1qz8A 113 5.80e+01 b.140.1.1 96619 2fpeA 62 5.82e+01 1n0uA 842 5.98e+01 b.43.3.1,c.37.1.8,d.14.1.1,d.58.11.1,d.58.11.1 79757,79758,79759,79760,79761 2bfdB 345 6.02e+01 1x7yB 342 6.12e+01 1ig8A 486 6.27e+01 2yhx c.55.1.3,c.55.1.3 64746,64747 2d00A 109 6.34e+01 1g03A 134 6.39e+01 1qrjB a.73.1.1 60162 2fji1 399 6.62e+01 1yw5A 177 6.71e+01 1v2bA 177 6.84e+01 d.107.1.2 108279 1s1iF 162 6.96e+01 i.1.1.1 105180 1wgxA 73 7.13e+01 1fqiA 147 7.34e+01 1agrE a.91.1.1 18542 1jbkA 195 7.48e+01 c.37.1.20 71631 1vig 71 7.70e+01 1vih d.51.1.1 38806 1ckv 141 7.70e+01 1ckv d.137.1.1 41452 1gg1A 350 7.73e+01 1qr7A c.1.10.4 29187 1f1zA 273 7.82e+01 1f1zA a.4.5.27,c.52.1.16 16081,33334 2b05A 246 7.87e+01 1x1fA 149 7.88e+01 1k47A 337 8.06e+01 d.14.1.5,d.58.26.4 72040,72041 1uhnA 189 8.16e+01 a.39.1.5 99399 1qf8A 182 8.36e+01 1qf8A g.41.4.1 45212 1lldA 319 8.39e+01 3ldh c.2.1.5,d.162.1.1 30177,42144 1tffA 234 8.51e+01 d.3.1.11 106854 1fit 147 8.67e+01 1fit d.13.1.1 37499 1yfuA 174 8.69e+01 1xauA 122 8.73e+01 1y1xA 191 8.81e+01 2c3gA 98 8.84e+01 1np3A 338 8.90e+01 a.100.1.2,c.2.1.6 85946,85947 1pfsA 78 8.91e+01 1pfsA b.40.4.7 25391 1zud1 251 8.91e+01 1deeG 54 8.92e+01 1fc2C a.8.1.1 16343 2gk3A 256 8.97e+01