CreatePredAlphaCost pred_alpha2k alpha11 T0342.t2k.alpha.rdb 2 alpha alpha_prev sum CreatePredAlphaCost pred_alpha04 alpha11 T0342.t04.alpha.rdb 2 alpha alpha_prev sum CreatePredAlphaCost pred_alpha06 alpha11 T0342.t06.alpha.rdb 2 alpha alpha_prev sum SetCost wet6.5 15 near_backbone 5 way_back 5 dry5 25 dry6.5 30 dry8 25 dry12 5 \ phobic_fit 2 \ sidechain 5 \ n_ca_c 5 bad_peptide 10 \ bystroff 5 \ soft_clashes 40 backbone_clashes 2 \ break 90 \ pred_alpha2k 2 \ pred_alpha04 2 \ pred_alpha06 2 \ constraints 10 \ hbond_geom 5 \ hbond_geom_backbone 10 \ hbond_geom_beta 50 \ hbond_geom_beta_pair 50 \ missing_atoms 1 \ maybe_metal 0.5 # from decoys/try22-opt2.sheets SheetConstraint S16 A21 N87 V82 hbond F17 1 SheetConstraint F41 D48 W84 D77 hbond C42 1 SheetConstraint V43 L46 Q115 V112 hbond R45 1 SheetConstraint F49 F53 Q73 A69 hbond K50 1 SheetConstraint Y105 T114 M127 K118 hbond I108 1 SheetConstraint C122 S124 L18 F20 hbond R123 1 # from decoys/try22-opt2.helices HelixConstraint S1 T10 HelixConstraint L27 N35 HelixConstraint N87 Q97 HelixConstraint Y139 G151 HelixConstraint L154 I163 HelixConstraint A162 G170 HelixConstraint S173 L188