# List of top-scoring protein chains for t2k-100-30-dssp-ehl2-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # # FSSP representative for each protein chain taken from FSSP: # ------------------Citations (FSSP) ----------------------------------- # L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue FSSP-rep SCOP_domain SCOP_suid 5S 5N 12S 6S 12S 10N 2g0qA 173 1.36e-04 1vkbA 161 2.24e-04 d.269.1.1 108643 1v30A 124 9.18e-03 1eejA 216 1.67e-01 1eejA c.47.1.9,d.17.3.1 33057,38071 1kqaA 203 2.75e+00 b.81.1.3 72868 1krrA 203 2.75e+00 b.81.1.3 72899 1wfuA 120 5.24e+00 1es9A 232 5.68e+00 1wab c.23.10.3 31340 1wab 232 5.70e+00 1wab c.23.10.3 31341 2fvgA 340 5.80e+00 1n7zA 334 6.02e+00 b.127.1.1 85380 1qwtA 255 6.88e+00 b.26.1.3 96501 2bfgA 503 6.92e+00 1z94A 147 8.33e+00 1m2oA 768 8.77e+00 a.71.2.1,b.2.8.1,c.62.1.2,d.109.2.1,g.41.10.1 78480,78481,78482,78483,78484 1d3zA 76 8.92e+00 1ubi d.15.1.1 37592 1qo7A 394 9.29e+00 1qo7A c.69.1.11 34697 1zs7A 190 9.31e+00 2cx1A 187 9.90e+00 1ubq 76 9.93e+00 1ubi d.15.1.1 37585 1rpa 342 1.00e+01 1cviA c.60.1.2 33983 1nbfD 76 1.07e+01 d.15.1.1 80390 1n00A 321 1.25e+01 a.65.1.1 85241 1ogwA 76 1.32e+01 d.15.1.1 87001 1ubi 76 1.32e+01 1ubi d.15.1.1 37584 1dmwA 307 1.42e+01 4pah d.178.1.1 42580 4pah 308 1.42e+01 4pah d.178.1.1 42576 1pah 308 1.42e+01 4pah d.178.1.1 42578 2bs9A 503 1.46e+01 2eiaB 206 1.48e+01 1eia a.28.3.1,a.73.1.1 16950,18330 1j8uA 325 1.52e+01 d.178.1.1 71611 2ab5A 269 1.59e+01 1b34A 119 1.59e+01 1d3bA b.38.1.1 24796 1pvxA 194 1.59e+01 1axkA b.29.1.11 24341 2hpaA 342 1.60e+01 1cviA c.60.1.2 33985 1q3iA 214 1.62e+01 d.220.1.1 104524 1i7fA 292 1.65e+01 1i7fA d.193.1.1 61888 1fggA 261 1.70e+01 1fggA c.68.1.7 34576 2fgeA 995 1.74e+01 1i1iP 681 1.75e+01 1i1iP d.92.1.5 40297 2h21A 440 1.85e+01 1ukuA 102 1.90e+01 d.58.5.2 99533 1yl31 118 2.00e+01 1nd6A 354 2.04e+01 c.60.1.2 80407 1b2vA 188 2.04e+01 1b2vA d.35.1.1 38532 1dk0A 188 2.04e+01 1b2vA d.35.1.1 38530 1p32C 209 2.06e+01 1p32A d.25.1.1 38381 1qfhA 212 2.08e+01 1qfhA b.1.18.10,b.1.18.10 21893,21894 1v0aA 178 2.20e+01 1luzA 88 2.25e+01 b.40.4.5 74271 2cxaA 256 2.27e+01 1odkA 235 2.53e+01 c.56.2.1 86863 2f1rA 171 2.54e+01 1g5cA 170 2.62e+01 1g5cA c.53.2.1 60264 1ecmA 109 2.63e+01 1ecmA a.130.1.1 19492 1p0yA 444 2.66e+01 a.166.1.1,b.85.7.3 87654,87655 1an7A 136 2.71e+01 1seiA d.140.1.1 41465 1mlvA 444 2.82e+01 a.166.1.1,b.85.7.3 79283,79284 1wddA 477 2.87e+01 1gk8A 475 2.97e+01 c.1.14.1,d.58.9.1 65234,65235 1v9nA 360 3.02e+01 1yr0A 175 3.04e+01 1m4zA 238 3.07e+01 b.34.12.1 78630 1fwcC 567 3.10e+01 1ubpC b.92.1.1,c.1.9.2 28410,29032 1y2qA 143 3.11e+01 1fjjA 159 3.12e+01 1fjjA b.17.1.2 59852 1ejrC 567 3.13e+01 1ubpC b.92.1.1,c.1.9.2 28420,29042 1ejxC 567 3.23e+01 b.92.1.1,c.1.9.2 83184,83185 1xjvA 294 3.24e+01 1j8rA 196 3.24e+01 1j8rA b.2.3.3 62745 1uxzA 131 3.26e+01 b.18.1.10 100170 1p32A 209 3.61e+01 1p32A d.25.1.1 38379 1p5zB 263 3.75e+01 c.37.1.1 87815 1gg1A 350 3.80e+01 1qr7A c.1.10.4 29187 1wveC 80 3.84e+01 1fsu 492 3.86e+01 1auk c.76.1.2 35032 2fkbA 180 3.86e+01 1diiC 80 3.87e+01 1diiC a.3.1.1 15925 1tcvA 287 3.88e+01 1cz4A 185 3.89e+01 1cz4A b.52.2.3,d.31.1.1 26934,38468 1qr7A 350 3.89e+01 1qr7A c.1.10.4 29191 1n8fA 350 3.95e+01 c.1.10.4 85397 1cviA 342 3.98e+01 1cviA c.60.1.2 33989 1h65A 270 4.03e+01 c.37.1.8 65640 1a12A 413 4.04e+01 1a12A b.69.5.1 27663 3rnt 104 4.16e+01 9rnt d.1.1.4 36069 1vi2A 300 4.32e+01 c.2.1.7,c.58.1.5 100726,100727 1pbwA 216 4.35e+01 1pbwA a.116.1.1 19103 1uv4A 293 4.42e+01 1ln1A 214 4.49e+01 d.129.3.2 74038 1kwsA 261 4.49e+01 c.68.1.7 73083 1a5mC 566 4.52e+01 1ubpC b.92.1.1,c.1.9.2 28423,29045 1a5kC 566 4.53e+01 1ubpC b.92.1.1,c.1.9.2 28425,29047 8rucA 475 4.55e+01 1burA c.1.14.1,d.58.9.1 29339,39245 1blxA 326 4.55e+01 1hcl d.144.1.7 41596 1a5lC 566 4.55e+01 1ubpC b.92.1.1,c.1.9.2 28426,29048 1c0nA 406 4.57e+01 1c0nA c.67.1.3 34433 1qttA 117 4.58e+01 1a1x b.63.1.1 27516 1i0vA 104 4.69e+01 9rnt d.1.1.4 36054 1hrnA 337 4.70e+01 1smrA b.50.1.2 26869 2d1eA 248 4.76e+01 9rnt 104 4.77e+01 9rnt d.1.1.4 36055 1yemA 179 4.93e+01 1agnA 373 4.95e+01 2ohxA b.35.1.2,c.2.1.1 24737,29753 1r1hA 696 5.02e+01 d.92.1.4 104756 2f6kA 307 5.10e+01 1g4wR 383 5.19e+01 1g4uS a.24.11.1,c.45.1.2 16644,32692 1r85A 379 5.25e+01 c.1.8.3 104839 1zz1A 369 5.26e+01 2cab 261 5.31e+01 2cba b.74.1.1 27906 1t13A 158 5.36e+01 2fx2 147 5.41e+01 1rcf c.23.5.1 31158 1dmtA 696 5.53e+01 1dmtA d.92.1.4 40296 1yna 194 5.55e+01 1axkA b.29.1.11 24335 1hizA 379 5.56e+01 c.1.8.3 65841 1hw7A 255 5.61e+01 1i7fA d.193.1.1 61297 1fl2A 310 5.75e+01 1hyuA c.3.1.5,c.3.1.5 59869,59870 1wduA 245 5.77e+01 d.151.1.1 109286 1di0A 158 5.86e+01 1di0A c.16.1.1 30957 1vkkA 154 5.88e+01 d.109.1.2 108669 2g8yA 385 6.03e+01 1yj1A 76 6.10e+01 2gasA 307 6.42e+01 1z4rA 168 6.42e+01 2hnp 321 6.56e+01 1pty c.45.1.2 32678 1g7fA 298 6.67e+01 1pty c.45.1.2 60330 1burA 475 6.70e+01 1burA 2foyA 260 6.74e+01 1gzsB 165 6.78e+01 a.168.1.1 76425 1am3 70 6.79e+01 1eia 207 6.88e+01 1eia a.28.3.1,a.73.1.1 16951,18331 1iqzA 81 6.90e+01 d.58.1.4 66281 1f6kA 293 6.96e+01 1nal3 c.1.10.1 29081 1xkrA 206 7.10e+01 1rocA 155 7.22e+01 b.1.22.1 97673 2b49A 287 7.29e+01 1jj2A 239 7.30e+01 1rl2A b.34.5.3,b.40.4.5 63084,63085 1p15A 253 7.58e+01 c.45.1.2 93894 9pap 212 7.68e+01 1cs8A d.3.1.1 37006 1jb0D 138 7.69e+01 1jb0D d.187.1.1 62823 1lfpA 249 7.74e+01 e.39.1.1 73885 1tu1A 148 7.76e+01 d.107.1.3 107316 2ffsA 157 7.89e+01 2f02A 323 7.93e+01 2awdA 323 7.94e+01 1g60A 260 7.99e+01 c.66.1.11 70151 1mt6A 280 8.04e+01 b.76.2.1,b.85.7.1 79446,79447 1j3bA 529 8.05e+01 c.91.1.1,c.109.1.1 77071,77072 1rot 149 8.06e+01 1fkj d.26.1.1 38429 1jfuA 186 8.08e+01 c.47.1.10 62940 1byfA 125 8.19e+01 1byfA d.169.1.1 42419 1tlgA 125 8.19e+01 1byfA d.169.1.1 42421 1eexB 224 8.25e+01 1dioB c.51.3.1 33213 1j9eA 147 8.29e+01 c.23.5.1 62756 1hh1A 143 8.32e+01 1gefA c.52.1.18 61036 1hcb 260 8.39e+01 2cba b.74.1.1 27814 1bu5A 147 8.45e+01 5nul c.23.5.1 31155 1zxfA 155 8.48e+01 1aum 70 8.49e+01 1a8o a.28.3.1 16957 1pty 321 8.58e+01 1pty c.45.1.2 32656 1ei9A 279 8.66e+01 1ei9A c.69.1.13 34713 1xnkA 196 8.67e+01 1fm4A 159 8.68e+01 1bv1 d.129.3.1 76186 1akt 147 8.72e+01 5nul c.23.5.1 31157 1h1aA 191 8.75e+01 b.29.1.11 83450 1i7nA 309 8.78e+01 c.30.1.5,d.142.1.3 83681,83682 2aw4Q 117 8.79e+01 1ppn 212 8.85e+01 1cs8A d.3.1.1 37004 1sqiA 393 8.86e+01 d.32.1.3,d.32.1.3 105914,105915 2fokA 579 8.92e+01 2fokA a.4.5.12,a.4.5.12,a.4.5.12,c.52.1.12 16131,16132,16133,33323 1offA 97 8.94e+01 d.15.4.1 86947 1eguA 731 8.96e+01 1eguA a.102.3.2,b.24.1.1,b.30.5.2 18850,23899,24423 1f4pA 147 8.96e+01 5nul c.23.5.1 59651 1ql0A 241 8.99e+01 1qaeA d.4.1.2 37139