# List of top-scoring protein chains for t06-100-30-dssp-ehl2-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # # FSSP representative for each protein chain taken from FSSP: # ------------------Citations (FSSP) ----------------------------------- # L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue FSSP-rep SCOP_domain SCOP_suid 5S 5N 12S 6S 12S 10N 1vkbA 161 2.37e-12 d.269.1.1 108643 2g0qA 173 3.33e-12 1v30A 124 3.94e-07 1eejA 216 1.35e-01 1eejA c.47.1.9,d.17.3.1 33057,38071 1cjxA 357 2.93e-01 1cjxA d.32.1.3,d.32.1.3 38516,38517 1t5hX 504 8.72e-01 e.23.1.1 106449 1s9jA 341 2.21e+00 2foyA 260 2.24e+00 1ln1A 214 2.51e+00 d.129.3.2 74038 2fgeA 995 2.91e+00 1hw7A 255 2.94e+00 1i7fA d.193.1.1 61297 1fnd 314 3.78e+00 1fnc b.43.4.2,c.25.1.1 25626,31516 1r61A 207 3.88e+00 c.8.8.1 97138 1k32A 1045 4.83e+00 b.36.1.3,b.68.7.1,b.69.9.1,c.14.1.2 68068,68069,68070,68071 2f7fA 494 5.27e+00 2fp8A 322 5.67e+00 1tzzA 392 5.71e+00 1vbuA 328 5.99e+00 2fvgA 340 6.08e+00 1g4wR 383 6.09e+00 1g4uS a.24.11.1,c.45.1.2 16644,32692 8rucI 123 6.18e+00 1rboC d.73.1.1 39629 1bx1A 314 6.23e+00 1fnc b.43.4.2,c.25.1.1 25629,31519 1px5A 349 6.77e+00 a.160.1.2,d.218.1.6 95277,95278 1vbvA 105 8.41e+00 1jfuA 186 8.43e+00 c.47.1.10 62940 1zupA 315 8.67e+00 1pbwA 216 8.87e+00 1pbwA a.116.1.1 19103 1wu7A 434 9.25e+00 1pyaB 228 9.62e+00 1pyaB 1nm2A 317 9.70e+00 c.19.1.1,d.58.23.1 80654,80655 1uxzA 131 1.02e+01 b.18.1.10 100170 1eceA 358 1.02e+01 1eceA c.1.8.3 28813 1e8gA 560 1.09e+01 1qltA d.58.32.1,d.145.1.1 39455,41718 1vkkA 154 1.09e+01 d.109.1.2 108669 1ta8A 332 1.10e+01 1yqgA 263 1.11e+01 1nxmA 197 1.11e+01 b.82.1.1 86385 1g5cA 170 1.12e+01 1g5cA c.53.2.1 60264 1fljA 260 1.14e+01 2cba b.74.1.1 27954 1yx1A 264 1.15e+01 1fvgA 199 1.16e+01 1fvaA d.58.28.1 39408 1yrtA 364 1.16e+01 1ryiA 382 1.22e+01 2bjiA 277 1.25e+01 1gk8A 475 1.30e+01 c.1.14.1,d.58.9.1 65234,65235 1lugA 259 1.39e+01 b.74.1.1 91127 2bmoA 447 1.43e+01 1pg4A 652 1.43e+01 e.23.1.1 88067 1yemA 179 1.49e+01 1pa1A 310 1.49e+01 c.45.1.2 94404 1iqzA 81 1.53e+01 d.58.1.4 66281 1lwdA 413 1.55e+01 c.77.1.1 78265 1rocA 155 1.56e+01 b.1.22.1 97673 1aj8A 371 1.57e+01 1aj8A a.103.1.1 18900 1g8aA 227 1.57e+01 c.66.1.3 90506 1zz1A 369 1.57e+01 1kwgA 645 1.61e+01 b.71.1.1,c.1.8.1,c.23.16.5 77561,77562,77563 2f71A 298 1.63e+01 1ww7A 160 1.67e+01 1nrlA 316 1.72e+01 a.123.1.1 92091 1z02A 446 1.75e+01 1y7wA 291 1.75e+01 1poiA 317 1.80e+01 1poiA c.124.1.2 34153 1h4vB 421 1.86e+01 1adjA c.51.1.1,d.104.1.1 60624,60625 1m4jA 142 1.90e+01 d.109.1.2 78602 1qhtA 775 1.94e+01 1tgoA c.55.3.5,e.8.1.1 33722,43011 1fcdA 401 1.94e+01 1fcdA c.3.1.5,c.3.1.5,d.87.1.1 30593,30594,40218 2fh7A 595 1.99e+01 1x6oA 174 2.05e+01 b.34.5.2,b.40.4.5 109493,109494 1juvA 193 2.05e+01 c.71.1.1 90912 1s9pA 227 2.06e+01 a.123.1.1 105384 1ukkA 142 2.10e+01 d.227.1.1 99491 1rlhA 173 2.20e+01 d.256.1.1 97646 1zsoA 164 2.21e+01 1p32A 209 2.25e+01 1p32A d.25.1.1 38379 1wdtA 665 2.33e+01 1wa3A 205 2.35e+01 1j1lA 290 2.35e+01 b.82.1.12 90766 1zsqA 528 2.37e+01 1z94A 147 2.39e+01 1u5uA 374 2.45e+01 1f9yA 158 2.50e+01 d.58.30.1 83249 1svvA 359 2.53e+01 c.67.1.1 106054 1h2kA 349 2.54e+01 b.82.2.6 76572 1jihA 531 2.54e+01 d.240.1.1,e.8.1.7 90374,90375 1oaoA 674 2.56e+01 e.26.1.2 86744 1u1iA 392 2.59e+01 c.2.1.3,d.81.1.3 107582,107583 1v0aA 178 2.59e+01 2ghjA 118 2.65e+01 2cz2A 223 2.66e+01 2pia 321 2.67e+01 2pia b.43.4.2,c.25.1.2,d.15.4.2 25663,31553,37704 2d2eA 250 2.67e+01 1tdhA 364 2.71e+01 a.156.1.2,b.113.1.1,g.39.1.8 106772,106773,106774 1d0cA 444 2.73e+01 d.174.1.1 64769 2aexA 346 2.73e+01 1wddS 128 2.73e+01 1rreA 200 2.75e+01 d.14.1.10 97791 1vzyA 291 2.77e+01 1zanL 214 2.85e+01 1j4aA 333 2.86e+01 c.2.1.4,c.23.12.1 71502,71503 1wdnA 226 2.87e+01 1lst c.94.1.1 35816 1woqA 267 2.92e+01 c.55.1.10,c.55.1.10 109462,109463 1v1aA 309 2.96e+01 c.72.1.1 100249 1mxmA 254 3.01e+01 b.38.1.3,d.58.43.1,f.34.1.1 79647,79648,79649 1n0uA 842 3.09e+01 b.43.3.1,c.37.1.8,d.14.1.1,d.58.11.1,d.58.11.1 79757,79758,79759,79760,79761 2a74A 643 3.17e+01 1s96A 219 3.20e+01 c.37.1.1 98740 2fl7A 232 3.21e+01 1f1xA 322 3.22e+01 d.32.1.3,d.32.1.3 83208,83209 1ceo 343 3.23e+01 1ceo c.1.8.3 28808 1n9lA 109 3.25e+01 d.110.3.6 85468 1yoxA 250 3.30e+01 2an9A 207 3.33e+01 1fiwA 290 3.37e+01 5ptp 1p2hA 571 3.39e+01 a.138.1.3,c.3.1.4,d.168.1.1 93930,93931,93932 1mdbA 539 3.40e+01 e.23.1.1 79008 1y07A 128 3.42e+01 1zd0A 150 3.49e+01 1k66A 149 3.57e+01 c.23.1.1 90941 1mg7A 417 3.65e+01 d.14.1.6,d.58.26.6 84954,84955 1vj1A 363 3.71e+01 b.35.1.2,c.2.1.1 100794,100795 1uc2A 481 3.73e+01 d.261.1.1 99161 1oxdA 227 3.80e+01 d.22.1.1 93687 2gi3A 476 3.84e+01 1tu1A 148 3.90e+01 d.107.1.3 107316 1bfg 146 3.93e+01 1bfg b.42.1.1 25485 1xuvA 178 3.94e+01 1u3eM 174 3.94e+01 d.4.1.3,d.285.1.1 107640,107641 1umwA 237 4.01e+01 d.223.1.2,d.223.1.2 99631,99632 1y2qA 143 4.05e+01 1uekA 275 4.08e+01 d.14.1.5,d.58.26.5 88483,88484 1j2gA 319 4.09e+01 d.96.1.4,d.96.1.4,d.96.1.4,d.96.1.4,d.96.1.4 103824,103825,103826,103827,103828 1txnA 328 4.11e+01 1yqzA 438 4.20e+01 1g0cA 364 4.24e+01 7a3hA c.1.8.3 60165 2fokA 579 4.33e+01 2fokA a.4.5.12,a.4.5.12,a.4.5.12,c.52.1.12 16131,16132,16133,33323 1wvfA 520 4.33e+01 1ihgA 370 4.35e+01 2cpl a.118.8.1,b.62.1.1 62380,62381 1n7zA 334 4.37e+01 b.127.1.1 85380 1goiA 499 4.54e+01 b.72.2.1,c.1.8.5,d.26.3.1 65413,65414,65415 1inlA 296 4.55e+01 c.66.1.17 66220 1i36A 264 4.56e+01 a.100.1.8,c.2.1.6 71108,71109 1tl9A 339 4.58e+01 2cg4A 152 4.60e+01 1wduA 245 4.66e+01 d.151.1.1 109286 1f39A 101 4.67e+01 1umuA b.87.1.1 28386 1zxkA 98 4.67e+01 1em2A 229 4.70e+01 1em2A d.129.3.2 41321 1idaA 99 4.82e+01 1fmb b.50.1.1 26715 1a2zA 220 4.82e+01 1a2zA c.56.4.1 33794 1t77A 414 4.82e+01 2bvcA 486 4.84e+01 2g39A 497 4.89e+01 2agaA 190 4.99e+01 1zvnA 99 5.12e+01 1h8eA 510 5.12e+01 1skyB a.69.1.1,b.49.1.1,c.37.1.11 60738,60739,60740 1ukuA 102 5.22e+01 d.58.5.2 99533 2bzlA 325 5.22e+01 2gqrA 237 5.27e+01 1g3mA 294 5.31e+01 c.37.1.5 83268 1qqrA 138 5.39e+01 1bmlC d.15.5.1 37721 1io2A 213 5.42e+01 1ekeA c.55.3.1 62612 2fb1A 226 5.52e+01 1v58A 241 5.53e+01 c.47.1.9,d.17.3.1 108371,108372 1vjhA 122 5.56e+01 d.129.3.1 100811 1r9hA 135 5.58e+01 d.26.1.1 97260 1tafB 70 5.59e+01 1tafB a.22.1.3 16482 1j0dA 341 5.62e+01 c.79.1.1 83902 1heiA 451 5.66e+01 1heiA c.37.1.14,c.37.1.14 32463,32464 1sazA 381 5.67e+01 1jalA 363 5.69e+01 c.37.1.8,d.15.10.2 84138,84139 1p5zB 263 5.80e+01 c.37.1.1 87815 1g3qA 237 5.81e+01 1hyqA c.37.1.10 60237 2btoA 473 5.81e+01 1su0B 159 5.85e+01 d.224.1.2 106015 2ck3A 510 5.85e+01 1uliA 460 5.86e+01 b.33.1.2,d.129.3.3 107921,107922 1o7nA 449 5.89e+01 b.33.1.2,d.129.3.3 81162,81163 2b8wA 328 5.97e+01 1xjvA 294 6.01e+01 1u4nA 310 6.06e+01 1sgwA 214 6.19e+01 c.37.1.12 105541 1b3tA 147 6.26e+01 1b3tA d.58.8.1 39228 1id1A 153 6.28e+01 1id1A c.2.1.9 62286 1od3A 168 6.44e+01 b.18.1.10 86825 1u9tA 354 6.44e+01 1ad2 228 6.62e+01 1ad2 e.24.1.1 43353 1fgyA 127 6.62e+01 1faoA b.55.1.1 26976 2as0A 396 6.67e+01 1kgdA 180 6.70e+01 c.37.1.1 68582 1d3bA 75 6.79e+01 1d3bA b.38.1.1 24798 2b9lA 394 6.84e+01 2bitX 165 6.92e+01 1li4A 432 7.01e+01 c.2.1.4,c.23.12.3 84616,84617 1utg 70 7.02e+01 1utg a.101.1.1 18813 1ihkA 174 7.05e+01 1bfg b.42.1.1 62384 1d8hA 311 7.09e+01 1d8iA d.63.1.1 39544 1kmvA 186 7.10e+01 c.71.1.1 72757 1nqzA 194 7.12e+01 d.113.1.1 86077 1m98A 317 7.19e+01 a.175.1.1,d.17.4.6 78866,78867 1zgoA 223 7.20e+01 1i39A 225 7.23e+01 1ekeA c.55.3.1 61585 1b7yA 350 7.23e+01 1pysA d.104.1.1 40776 1wo8A 126 7.38e+01 1ecfA 504 7.39e+01 1ecfB c.61.1.1,d.153.1.1 34053,41820 1ia6A 441 7.43e+01 a.102.1.2 76738 1nowA 507 7.44e+01 c.1.8.6,d.92.2.1 85936,85937 1te0A 318 7.45e+01 1vi2A 300 7.49e+01 c.2.1.7,c.58.1.5 100726,100727 2ex5A 207 7.52e+01 1xv2A 237 7.57e+01 2bx6A 350 7.57e+01 1ts9A 102 7.61e+01 2b3gA 123 7.61e+01 1wpoA 256 7.62e+01 1lay b.57.1.1 27012 1wpnA 188 7.65e+01 1uyrA 737 7.69e+01 c.14.1.4,c.14.1.4 100188,100189 1fjgP 88 7.70e+01 1emwA d.27.1.1 38444 2c3gA 98 7.78e+01 2bnxA 386 7.83e+01 1uacL 107 7.83e+01 b.1.1.1 99133 2arzA 247 7.86e+01 1tuaA 191 7.87e+01 d.51.1.1,d.51.1.1 107321,107322 2a6hC 1119 7.94e+01 4fiv 113 8.00e+01 1fmb b.50.1.1 26762 1t13A 158 8.01e+01 1lcyA 325 8.01e+01 b.36.1.4,b.47.1.1 73834,73835 2eucA 130 8.01e+01 1c0pA 363 8.02e+01 1an9A c.4.1.2,d.16.1.3 30647,37934 2gl5A 410 8.19e+01 1fm4A 159 8.23e+01 1bv1 d.129.3.1 76186 2cdpA 160 8.26e+01 1nvmB 312 8.30e+01 c.2.1.3,d.81.1.1 86251,86252 1pv0A 46 8.34e+01 a.2.12.1 95141 1bif 469 8.36e+01 1bif c.37.1.7,c.60.1.4 31961,34003 1yge 839 8.37e+01 1yge a.119.1.1,b.12.1.1 19234,23634 1h4gA 207 8.56e+01 b.29.1.11 70863 1g8mA 593 8.56e+01 1g8mA c.24.1.3,c.97.2.1 60371,60372 1gppA 237 8.63e+01 b.86.1.2 76262 1e5mA 416 8.64e+01 1dd8A c.95.1.1,c.95.1.1 58973,58974 2awkA 228 8.65e+01 1kl9A 182 8.75e+01 b.40.4.5 72681 1wwtA 88 8.79e+01 1oi0A 124 8.83e+01 c.97.3.1 93045 2c5qA 240 8.93e+01 1vmeA 410 8.93e+01 c.23.5.1,d.157.1.3 108893,108894 2a19A 175 8.95e+01