# List of top-scoring protein chains for t06-100-30-CB_burial_14_7-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # # FSSP representative for each protein chain taken from FSSP: # ------------------Citations (FSSP) ----------------------------------- # L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue FSSP-rep SCOP_domain SCOP_suid 5S 5N 12S 6S 12S 10N 1vkbA 161 2.80e-15 d.269.1.1 108643 2g0qA 173 1.08e-12 1v30A 124 4.18e-08 1yqgA 263 1.42e+00 1b6a 478 2.31e+00 1bn5 a.4.5.25,d.127.1.1 16223,41160 1ku1A 230 2.44e+00 a.118.3.1 72996 1k66A 149 4.62e+00 c.23.1.1 90941 1cjxA 357 5.13e+00 1cjxA d.32.1.3,d.32.1.3 38516,38517 1k4mA 213 5.64e+00 c.26.1.3 77258 1zbpA 273 5.72e+00 1wlsA 328 6.41e+00 1eejA 216 6.90e+00 1eejA c.47.1.9,d.17.3.1 33057,38071 1lrv 244 7.39e+00 1lrv a.118.1.5 19146 2bzlA 325 7.81e+00 1j5wA 298 7.83e+00 d.104.1.1 71589 5pal 109 7.99e+00 1a75A a.39.1.4 17215 1v0aA 178 8.04e+00 1pjr 724 9.15e+00 1pjr c.37.1.19,c.37.1.19 32391,32392 1wekA 217 9.53e+00 1e9gA 286 9.91e+00 1wgjA b.40.5.1 59393 1o7nA 449 1.03e+01 b.33.1.2,d.129.3.3 81162,81163 1g4mA 393 1.04e+01 b.1.18.11,b.1.18.11 65143,65144 1wteA 272 1.08e+01 1y2qA 143 1.08e+01 1ihkA 174 1.11e+01 1bfg b.42.1.1 62384 1pmhX 185 1.12e+01 b.18.1.18 104193 1bdfA 235 1.26e+01 1bdfA d.74.3.1,d.181.1.1 39727,42602 2bmoA 447 1.30e+01 1s1pA 331 1.30e+01 c.1.7.1 98350 1wg8A 285 1.39e+01 2foyA 260 1.39e+01 1bf5A 545 1.62e+01 1bg1A a.47.1.1,b.2.5.5,d.93.1.1 17766,22460,40526 1y7wA 291 1.73e+01 1sq5A 308 1.79e+01 c.37.1.6 105882 1fnd 314 1.81e+01 1fnc b.43.4.2,c.25.1.1 25626,31516 3seb 238 1.89e+01 3seb b.40.2.2,d.15.6.1 25184,37773 1f1xA 322 1.90e+01 d.32.1.3,d.32.1.3 83208,83209 1hu3A 260 1.94e+01 1hu3A a.118.1.14 19137 1wrmA 165 2.03e+01 1n08A 163 2.03e+01 b.43.5.1 79730 1vmeA 410 2.05e+01 c.23.5.1,d.157.1.3 108893,108894 1j4aA 333 2.10e+01 c.2.1.4,c.23.12.1 71502,71503 1ei5A 520 2.16e+01 1ei5A b.61.3.1,b.61.3.1,e.3.1.1 27418,27419,42772 1vfvA 366 2.21e+01 c.37.1.9 108592 1vprA 374 2.25e+01 1m6yA 301 2.38e+01 a.60.13.1,c.66.1.23 78716,78717 1rypJ 204 2.43e+01 d.153.1.4 41878 1nb8A 353 2.52e+01 d.3.1.9 80385 1fljA 260 2.54e+01 2cba b.74.1.1 27954 1bx1A 314 2.56e+01 1fnc b.43.4.2,c.25.1.1 25629,31519 1l6xA 207 2.71e+01 b.1.1.2,b.1.1.2 73642,73643 2b06A 155 2.75e+01 1p2fA 220 2.78e+01 a.4.6.1,c.23.1.1 87720,87721 1jr7A 311 2.89e+01 b.82.2.3 63255 1tqhA 247 2.90e+01 c.69.1.29 107225 1xzoA 174 2.92e+01 1em2A 229 3.04e+01 1em2A d.129.3.2 41321 1hbkA 94 3.09e+01 1aca a.11.1.1 60887 2ftzA 284 3.11e+01 1wbhA 214 3.24e+01 2f71A 298 3.26e+01 1vj7A 393 3.30e+01 a.211.1.1,d.218.1.8 100801,100802 1y96A 86 3.33e+01 2govA 195 3.39e+01 1pa1A 310 3.48e+01 c.45.1.2 94404 2fvgA 340 3.61e+01 1yzxA 226 3.68e+01 2dg5A 366 3.68e+01 1i6pA 220 3.80e+01 1ddzA c.53.2.1 61848 1kpf 126 3.87e+01 1kpf d.13.1.1 37507 2arhA 203 3.89e+01 1uwkA 557 3.93e+01 e.51.1.1 108065 2fdsA 352 4.00e+01 2au3A 407 4.00e+01 1nz6A 101 4.08e+01 a.2.3.1 86441 1wdtA 665 4.19e+01 1c8uA 285 4.20e+01 1c8uA d.38.1.3,d.38.1.3 38547,38548 1ri6A 343 4.33e+01 b.69.11.1 97503 1wveC 80 4.35e+01 2axtO 247 4.39e+01 1qd1A 325 4.47e+01 1qd1A d.58.34.1,d.58.34.1 39493,39494 1fxxA 482 4.53e+01 1fxxA c.55.3.5 33726 1t71A 281 4.57e+01 1j1lA 290 4.61e+01 b.82.1.12 90766 2g39A 497 4.62e+01 1pv0A 46 4.72e+01 a.2.12.1 95141 1wj9A 211 4.81e+01 1offA 97 4.96e+01 d.15.4.1 86947 1kg0C 136 4.99e+01 d.169.1.1 72445 1g5cA 170 4.99e+01 1g5cA c.53.2.1 60264 1ryaA 160 5.01e+01 d.113.1.5 105122 2gdzA 267 5.02e+01 2axtB 510 5.04e+01 2a9dA 372 5.10e+01 1ae9A 179 5.22e+01 1ae9A d.163.1.1 42153 1b9oA 123 5.26e+01 3lzt d.2.1.2 36597 1gzsB 165 5.29e+01 a.168.1.1 76425 2fh7A 595 5.33e+01 1wpnA 188 5.35e+01 2a6vA 226 5.40e+01 2f46A 156 5.44e+01 1iu4A 331 5.57e+01 d.3.1.8 71430 1w7jB 151 5.58e+01 1fvpA 231 5.62e+01 1nfp c.1.16.2 29556 1t5hX 504 5.65e+01 e.23.1.1 106449 2ganA 190 5.76e+01 2gfoA 396 5.78e+01 2d2eA 250 5.99e+01 1u09A 476 6.03e+01 e.8.1.4 107545 1gk8A 475 6.15e+01 c.1.14.1,d.58.9.1 65234,65235 1j3bA 529 6.17e+01 c.91.1.1,c.109.1.1 77071,77072 2fz4A 237 6.19e+01 1w27A 714 6.21e+01 1vkmA 297 6.21e+01 c.138.1.1 108670 1vgjA 184 6.22e+01 2ctoA 93 6.28e+01 1jfuA 186 6.33e+01 c.47.1.10 62940 2cw8A 537 6.41e+01 1dxsA 80 6.42e+01 1cokA a.60.1.2 17944 1fsgA 233 6.45e+01 1qk3A c.61.1.1 34029 1oaoA 674 6.60e+01 e.26.1.2 86744 1sflA 238 6.72e+01 1rocA 155 6.77e+01 b.1.22.1 97673 2g09A 297 6.82e+01 1i8fA 81 6.84e+01 1i8fA b.38.1.1 61959 1j96A 323 6.87e+01 c.1.7.1 71616 1ww7A 160 7.06e+01 3il8 72 7.09e+01 1tvxA d.9.1.1 37356 1txgA 335 7.11e+01 1i36A 264 7.16e+01 a.100.1.8,c.2.1.6 71108,71109 1s96A 219 7.19e+01 c.37.1.1 98740 1f74A 293 7.22e+01 1nal3 c.1.10.1 29079 1t64A 377 7.29e+01 c.42.1.2 106543 1jb9A 316 7.41e+01 1fnc b.43.4.2,c.25.1.1 62840,62841 1y44A 320 7.50e+01 1lshA 1056 7.56e+01 a.118.4.1,f.7.1.1,f.7.1.1 74242,74243,74244 1ad1A 266 7.65e+01 1aj2 c.1.21.1 29668 1h7zA 194 7.68e+01 1qhvA b.21.1.1 60733 1swvA 267 7.70e+01 1izmA 184 7.71e+01 a.199.1.1 90725 2cspA 130 7.77e+01 1yllA 200 7.91e+01 1u3eM 174 7.92e+01 d.4.1.3,d.285.1.1 107640,107641 1i6lA 328 7.93e+01 c.26.1.1 66041 1qs1A 462 8.01e+01 1qs1A d.166.1.1,d.166.1.1 42260,42261 2fqxA 318 8.03e+01 2bv5A 282 8.06e+01 1bvyF 191 8.09e+01 1bvyF c.23.5.1 31207 1m4iA 181 8.15e+01 d.108.1.1 74457 1evlA 401 8.25e+01 1qf6A c.51.1.1,d.104.1.1 33202,40751 1xkiA 162 8.27e+01 1s69A 124 8.30e+01 a.1.1.1 105305 1sk4A 163 8.37e+01 d.118.1.1 105664 1uliA 460 8.39e+01 b.33.1.2,d.129.3.3 107921,107922 1vg8A 207 8.47e+01 c.37.1.8 108606 1ko6A 187 8.53e+01 b.119.1.1 77471 2ag5A 246 8.61e+01 1zvnA 99 8.64e+01 2akaB 299 8.67e+01 1a1x 108 8.78e+01 1a1x b.63.1.1 27514 1c1yB 77 8.80e+01 1c1yB d.15.1.5 37618 1mexH 215 8.85e+01 b.1.1.1,b.1.1.2 91257,91258