# List of top-scoring protein chains for t04-100-30-dssp-ebghstl-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # # FSSP representative for each protein chain taken from FSSP: # ------------------Citations (FSSP) ----------------------------------- # L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue FSSP-rep SCOP_domain SCOP_suid 5S 5N 12S 6S 12S 10N 2g0qA 173 1.16e-15 1vkbA 161 3.69e-14 d.269.1.1 108643 1v30A 124 1.94e-08 1cjxA 357 6.71e-02 1cjxA d.32.1.3,d.32.1.3 38516,38517 1ln1A 214 7.99e-02 d.129.3.2 74038 1t5hX 504 1.17e-01 e.23.1.1 106449 1wu7A 434 1.80e-01 1lugA 259 4.34e-01 b.74.1.1 91127 2foyA 260 4.59e-01 1g5cA 170 7.57e-01 1g5cA c.53.2.1 60264 1hcb 260 7.69e-01 2cba b.74.1.1 27814 1eejA 216 8.13e-01 1eejA c.47.1.9,d.17.3.1 33057,38071 1ukkA 142 9.58e-01 d.227.1.1 99491 1rovA 857 9.95e-01 a.119.1.1,b.12.1.1 97674,97675 1yo1A 260 1.03e+00 2cba 260 1.04e+00 2cba b.74.1.1 27821 1hw7A 255 1.07e+00 1i7fA d.193.1.1 61297 1tzzA 392 1.09e+00 1svvA 359 1.18e+00 c.67.1.1 106054 1yemA 179 1.26e+00 1mdbA 539 1.27e+00 e.23.1.1 79008 2f7fA 494 1.60e+00 2fl7A 232 1.64e+00 1vbuA 328 1.75e+00 1g4wR 383 1.91e+00 1g4uS a.24.11.1,c.45.1.2 16644,32692 1j2gA 319 1.93e+00 d.96.1.4,d.96.1.4,d.96.1.4,d.96.1.4,d.96.1.4 103824,103825,103826,103827,103828 1s9jA 341 2.05e+00 1blxA 326 2.24e+00 1hcl d.144.1.7 41596 1lshA 1056 2.69e+00 a.118.4.1,f.7.1.1,f.7.1.1 74242,74243,74244 2d9rA 104 2.83e+00 1ukuA 102 2.84e+00 d.58.5.2 99533 1x6oA 174 2.87e+00 b.34.5.2,b.40.4.5 109493,109494 1adjA 421 2.90e+00 1adjA c.51.1.1,d.104.1.1 33188,40737 1k3eA 156 2.99e+00 d.198.1.1 68103 1fnd 314 3.10e+00 1fnc b.43.4.2,c.25.1.1 25626,31516 1fnc 314 3.15e+00 1fnc b.43.4.2,c.25.1.1 25627,31517 1v10A 521 3.32e+00 b.6.1.3,b.6.1.3,b.6.1.3 108224,108225,108226 1i74A 309 3.35e+00 1i74A c.107.1.1 61867 1uisA 231 3.39e+00 d.22.1.1 99431 1y2qA 143 3.56e+00 1zgoA 223 3.70e+00 1v6fA 151 3.80e+00 d.109.1.2 108395 1fr7A 260 4.25e+00 2cba b.74.1.1 27828 1uekA 275 4.26e+00 d.14.1.5,d.58.26.5 88483,88484 1p32A 209 4.53e+00 1p32A d.25.1.1 38379 1vkkA 154 4.67e+00 d.109.1.2 108669 1u9tA 354 4.72e+00 1pbwA 216 5.01e+00 1pbwA a.116.1.1 19103 3fivA 116 5.08e+00 1fmb b.50.1.1 26768 1hfuA 503 5.33e+00 b.6.1.3,b.6.1.3,b.6.1.3 65827,65828,65829 1h4vB 421 5.35e+00 1adjA c.51.1.1,d.104.1.1 60624,60625 1vbvA 105 5.39e+00 1wfuA 120 5.51e+00 1ggxA 223 5.52e+00 1ggxA d.22.1.1 38367 1lwdA 413 5.58e+00 c.77.1.1 78265 1mg7A 417 5.73e+00 d.14.1.6,d.58.26.6 84954,84955 1a65A 504 5.76e+00 1a65A b.6.1.3,b.6.1.3,b.6.1.3 23148,23149,23150 1nxmA 197 6.17e+00 b.82.1.1 86385 1n9lA 109 6.20e+00 d.110.3.6 85468 4fiv 113 6.46e+00 1fmb b.50.1.1 26762 1t8sA 484 6.50e+00 c.56.2.1 106679 1k32A 1045 6.70e+00 b.36.1.3,b.68.7.1,b.69.9.1,c.14.1.2 68068,68069,68070,68071 1mvwC 147 6.74e+00 i.15.1.1 79525 1omoA 322 6.99e+00 c.2.1.13 104017 1s1eA 224 7.03e+00 1r61A 207 7.03e+00 c.8.8.1 97138 1e3pA 757 7.07e+00 1e3hA a.4.9.1,b.40.4.5,d.14.1.4,d.14.1.4,d.52.3.1,d.101.1.1,d.101.1.1 16258,25328,37574,37575,38811,40697,40698 1xgsA 295 7.09e+00 1bn5 a.4.5.25,d.127.1.1 16216,41153 1ospO 257 7.13e+00 1ospO b.76.1.1 27971 1h2kA 349 7.29e+00 b.82.2.6 76572 2c5qA 240 7.42e+00 1obbA 480 7.53e+00 c.2.1.5,d.162.1.2 86760,86761 2awkA 228 7.72e+00 2fh7A 595 7.93e+00 2eucA 130 8.29e+00 1xssA 225 8.51e+00 1aj8A 371 8.52e+00 1aj8A a.103.1.1 18900 1bx1A 314 9.01e+00 1fnc b.43.4.2,c.25.1.1 25629,31519 1yl31 118 9.04e+00 1lci 550 9.41e+00 1lci e.23.1.1 43349 8rucI 123 9.51e+00 1rboC d.73.1.1 39629 1sy3A 184 9.56e+00 b.60.1.1 106110 1uy4A 145 9.71e+00 b.18.1.10 108131 1pg4A 652 9.71e+00 e.23.1.1 88067 1idaA 99 9.84e+00 1fmb b.50.1.1 26715 1fvgA 199 1.01e+01 1fvaA d.58.28.1 39408 2fp8A 322 1.02e+01 1larA 575 1.02e+01 1larA c.45.1.2,c.45.1.2 32693,32694 1oohA 126 1.03e+01 a.39.2.1 93383 1f39A 101 1.06e+01 1umuA b.87.1.1 28386 1vj1A 363 1.06e+01 b.35.1.2,c.2.1.1 100794,100795 1qwtA 255 1.08e+01 b.26.1.3 96501 1yoxA 250 1.09e+01 1kwgA 645 1.10e+01 b.71.1.1,c.1.8.1,c.23.16.5 77561,77562,77563 1uxzA 131 1.11e+01 b.18.1.10 100170 2d2eA 250 1.12e+01 1ng4A 390 1.13e+01 c.3.1.2,d.16.1.3 85666,85667 1oxdA 227 1.14e+01 d.22.1.1 93687 1lx7A 253 1.14e+01 c.56.2.1 74329 2gl5A 410 1.15e+01 2shpA 525 1.20e+01 2shpA c.45.1.2,d.93.1.1,d.93.1.1 32683,40533,40534 1s6yA 450 1.20e+01 c.2.1.5,d.162.1.2 105314,105315 1iw7C 1119 1.20e+01 e.29.1.1 71474 1fiwA 290 1.20e+01 5ptp 1wtaA 275 1.21e+01 1xuvA 178 1.26e+01 2b3gA 123 1.27e+01 2ghjA 118 1.28e+01 1xxnA 185 1.30e+01 1kgdA 180 1.32e+01 c.37.1.1 68582 1p5zB 263 1.33e+01 c.37.1.1 87815 2aexA 346 1.35e+01 1gmmA 133 1.36e+01 b.18.1.10 65314 1gpqA 135 1.37e+01 d.233.1.1 83295 1aozA 552 1.37e+01 1aozA b.6.1.3,b.6.1.3,b.6.1.3 23124,23125,23126 1yx1A 264 1.39e+01 1ckmA 330 1.39e+01 1ckmA b.40.4.6,d.142.2.3 25358,41585 2ae0X 345 1.39e+01 1h65A 270 1.42e+01 c.37.1.8 65640 1uxxX 133 1.46e+01 b.18.1.10 100169 1quqB 121 1.46e+01 1quqB b.40.4.3 25305 1m4jA 142 1.48e+01 d.109.1.2 78602 2f96A 224 1.48e+01 1qxoA 388 1.49e+01 d.258.1.1 96539 1erxA 184 1.51e+01 1np1A b.60.1.1 27164 1koiA 184 1.52e+01 b.60.1.1 68725 2h21A 440 1.55e+01 1ryiA 382 1.59e+01 2cwsA 237 1.61e+01 2fvgA 340 1.63e+01 1n08A 163 1.66e+01 b.43.5.1 79730 1xs5A 241 1.68e+01 1yge 839 1.69e+01 1yge a.119.1.1,b.12.1.1 19234,23634 1m4zA 238 1.72e+01 b.34.12.1 78630 1fljA 260 1.72e+01 2cba b.74.1.1 27954 1bif 469 1.73e+01 1bif c.37.1.7,c.60.1.4 31961,34003 1s14A 194 1.76e+01 d.122.1.2 98329 1z94A 147 1.76e+01 1ww7A 160 1.77e+01 2b3oA 532 1.77e+01 1xnb 185 1.83e+01 1axkA b.29.1.11 24308 1gdoA 240 1.86e+01 1gdoA 1ema 236 1.86e+01 1ema d.22.1.1 38339 1nqzA 194 1.89e+01 d.113.1.1 86077 1z02A 446 1.90e+01 1f86A 115 1.92e+01 1etb1 b.3.4.1 59689 1qqrA 138 1.92e+01 1bmlC d.15.5.1 37721 2ck3A 510 1.92e+01 1zotA 358 1.93e+01 1woqA 267 1.93e+01 c.55.1.10,c.55.1.10 109462,109463 2ajrA 331 1.93e+01 1tafB 70 1.94e+01 1tafB a.22.1.3 16482 1yvcA 70 1.94e+01 2gaeA 346 1.98e+01 1rxyA 253 1.99e+01 c.56.2.1 98065 1s6cA 183 2.02e+01 a.39.1.5 98594 2bhvA 246 2.02e+01 1nepA 130 2.03e+01 b.1.18.7 80440 1vllA 334 2.04e+01 c.2.1.13 108834 2sqcA 631 2.08e+01 2sqcA a.102.4.2,a.102.4.2 18854,18855 1y7yA 74 2.10e+01 1k66A 149 2.11e+01 c.23.1.1 90941 1od3A 168 2.11e+01 b.18.1.10 86825 1yrtA 364 2.14e+01 1qj2B 809 2.15e+01 1qj2B 1pp7U 131 2.18e+01 a.4.5.44 94973 2a50B 168 2.19e+01 1y07A 128 2.23e+01 1nm2A 317 2.23e+01 c.19.1.1,d.58.23.1 80654,80655 2dddA 225 2.25e+01 1v1aA 309 2.27e+01 c.72.1.1 100249 2ffsA 157 2.27e+01 2akaA 776 2.28e+01 2bh8A 101 2.30e+01 1vjhA 122 2.32e+01 d.129.3.1 100811 1yruA 364 2.33e+01 1em2A 229 2.33e+01 1em2A d.129.3.2 41321 2bijA 305 2.33e+01 1b25A 619 2.34e+01 1b25A a.110.1.1,d.152.1.1 19044,41796 1n62B 809 2.40e+01 d.41.1.1,d.133.1.1 80092,80093 1zyeA 220 2.41e+01 1ynpA 317 2.44e+01 1jlnA 297 2.48e+01 1pty c.45.1.2 63172 1e8gA 560 2.51e+01 1qltA d.58.32.1,d.145.1.1 39455,41718 2b29A 123 2.51e+01 1wbpA 397 2.52e+01 2bmoA 447 2.53e+01 2a74A 643 2.55e+01 1yr2A 741 2.55e+01 2gokA 429 2.59e+01 1u3eM 174 2.60e+01 d.4.1.3,d.285.1.1 107640,107641 2bv5A 282 2.60e+01 1fgyA 127 2.61e+01 1faoA b.55.1.1 26976 1hzoA 271 2.62e+01 e.3.1.1 71092 1c7qA 445 2.63e+01 2pgi c.80.1.2 35307 1bvyF 191 2.64e+01 1bvyF c.23.5.1 31207 1u9jA 358 2.64e+01 1pz7A 204 2.64e+01 b.29.1.4 95405 1zxiB 809 2.66e+01 1gppA 237 2.69e+01 b.86.1.2 76262 1nwaA 203 2.69e+01 d.58.28.1 86295 1v0aA 178 2.70e+01 1v9nA 360 2.72e+01 1top 162 2.73e+01 1ncx a.39.1.5 17223 1pyaB 228 2.75e+01 1pyaB 1vc3B 97 2.76e+01 2bvcA 486 2.78e+01 1s4bP 674 2.79e+01 d.92.1.5 105252 1eqoA 158 2.79e+01 1hka 2gc9A 179 2.79e+01 1x8qA 184 2.81e+01 1cixA 44 2.83e+01 g.3.6.2 70066 2adcA 229 2.86e+01 1f9yA 158 2.93e+01 d.58.30.1 83249 1ec7A 446 2.96e+01 1bqg c.1.11.2,d.54.1.1 29218,38862 2giyA 191 2.97e+01 1u2xA 474 2.98e+01 c.72.1.3 107622 1gycA 499 3.00e+01 b.6.1.3,b.6.1.3,b.6.1.3 70748,70749,70750 1yqtA 538 3.03e+01 1c0pA 363 3.04e+01 1an9A c.4.1.2,d.16.1.3 30647,37934 1a12A 413 3.10e+01 1a12A b.69.5.1 27663 1wduA 245 3.10e+01 d.151.1.1 109286 1zsqA 528 3.12e+01 1b04A 318 3.13e+01 1b04A d.142.2.2 41579 1jmmA 377 3.14e+01 b.30.6.1 71749 2ddrA 306 3.14e+01 2a6hC 1119 3.15e+01 1ogoX 574 3.20e+01 b.133.1.1,b.80.1.10 92925,92926 1px5A 349 3.20e+01 a.160.1.2,d.218.1.6 95277,95278 1a1x 108 3.25e+01 1a1x b.63.1.1 27514 1jalA 363 3.27e+01 c.37.1.8,d.15.10.2 84138,84139 1ad2 228 3.29e+01 1ad2 e.24.1.1 43353 1yljA 263 3.30e+01 1d3bA 75 3.30e+01 1d3bA b.38.1.1 24798 1yqgA 263 3.34e+01 1nm1G 125 3.36e+01 d.109.1.1 80653 1xffA 240 3.36e+01 d.153.1.1 109580 2gfaA 119 3.37e+01 2f1wA 158 3.38e+01 1amuA 563 3.39e+01 1amuA e.23.1.1 43351 1um0A 365 3.44e+01 d.258.1.1 107942 1rreA 200 3.47e+01 d.14.1.10 97791 1ua4A 455 3.49e+01 c.72.1.3 99128 1pvxA 194 3.57e+01 1axkA b.29.1.11 24341 1oj7A 408 3.62e+01 e.22.1.2 103971 1t9kA 347 3.65e+01 c.124.1.5 106721 2absA 383 3.68e+01 1j99A 293 3.68e+01 c.37.1.5 71618 1xmzA 241 3.70e+01 2c71A 216 3.73e+01 1nd4A 264 3.73e+01 d.144.1.6 91815 1tk1A 260 3.73e+01 d.248.1.1 107066 2c0zA 216 3.80e+01 1odkA 235 3.86e+01 c.56.2.1 86863 2bjdA 101 3.87e+01 1wcqA 601 3.90e+01 1eexG 173 3.92e+01 1dioG a.23.2.1 16490 1lvoA 302 3.93e+01 b.47.1.4 74284 1tzjA 338 3.96e+01 1mo9A 523 3.98e+01 c.3.1.5,c.3.1.5,d.87.1.1 79341,79342,79343 1p0yA 444 3.99e+01 a.166.1.1,b.85.7.3 87654,87655 1diiC 80 3.99e+01 1diiC a.3.1.1 15925 4fgf 146 4.01e+01 1bfg b.42.1.1 25486 2bllA 345 4.02e+01 1ithA 141 4.06e+01 1ithA a.1.1.2 15623 1bg4 302 4.07e+01 1taxA c.1.8.3 28806 1ywnA 316 4.07e+01 1jfuA 186 4.07e+01 c.47.1.10 62940 1j7lA 264 4.09e+01 d.144.1.6 62697 1j0dA 341 4.10e+01 c.79.1.1 83902 1bfg 146 4.13e+01 1bfg b.42.1.1 25485 1p15A 253 4.14e+01 c.45.1.2 93894 2bitX 165 4.14e+01 2aw4Q 117 4.15e+01 1f2dA 341 4.17e+01 1f2dA c.79.1.1 35298 1gen 218 4.26e+01 1gen b.66.1.1 27536 1g0cA 364 4.27e+01 7a3hA c.1.8.3 60165 1d4xG 126 4.42e+01 1d0nA d.109.1.1 59109 2dcyA 185 4.42e+01 1tedA 393 4.43e+01 c.95.1.2 106807 1uxtA 501 4.44e+01 c.82.1.1 108125 1yb5A 351 4.44e+01 1qy1A 174 4.46e+01 b.60.1.1 96568 1i1iP 681 4.51e+01 1i1iP d.92.1.5 40297 1iqzA 81 4.53e+01 d.58.1.4 66281 1ve1A 304 4.55e+01 2fojA 155 4.57e+01 8acn 754 4.63e+01 1amj c.8.2.1,c.83.1.1 30724,35400 1bueA 265 4.63e+01 1btl e.3.1.1 42727 1a7s 221 4.64e+01 1a7s b.47.1.2 26284 1kypA 237 4.69e+01 d.22.1.1 73280 1eerB 227 4.69e+01 1eerB b.1.2.1,b.1.2.1 22011,22012 1i36A 264 4.74e+01 a.100.1.8,c.2.1.6 71108,71109 1gz8A 299 4.86e+01 d.144.1.7 83405 1vzyA 291 4.87e+01 1wveC 80 4.89e+01 2c46A 241 4.93e+01 1aquA 297 4.94e+01 1aquA c.37.1.5 31942 1mup 166 4.94e+01 1mup b.60.1.1 27133 1mxrA 375 4.97e+01 a.25.1.2 85197 2fl4A 149 4.99e+01 1gtdA 85 5.01e+01 d.284.1.1 76344 2gujA 155 5.07e+01 1ubi 76 5.08e+01 1ubi d.15.1.1 37584 1yy6A 155 5.09e+01 1ogwA 76 5.10e+01 d.15.1.1 87001 1hk9A 74 5.10e+01 b.38.1.2 83541 1oaiA 59 5.12e+01 a.5.2.3 81255 1w8oA 601 5.14e+01 2cy2A 174 5.19e+01 2bzlA 325 5.20e+01 1txnA 328 5.20e+01 2eveA 157 5.22e+01 1gwmA 153 5.27e+01 b.18.1.19 83348 1lvk 762 5.28e+01 1lvk b.34.3.1,c.37.1.9 24576,32173 1d0yA 761 5.29e+01 1lvk b.34.3.1,c.37.1.9 24581,32178 1nekA 588 5.31e+01 a.7.3.1,c.3.1.4,d.168.1.1 80426,80427,80428 2ampA 304 5.34e+01 1oshA 232 5.36e+01 a.123.1.1 93496 1ugxA 133 5.41e+01 2cz2A 223 5.41e+01 1cwvA 492 5.42e+01 1cwvA b.1.14.1,b.1.14.1,b.1.14.1,b.1.14.1,d.169.1.3 22373,22374,22375,22376,42442 1d0cA 444 5.44e+01 d.174.1.1 64769 1yr0A 175 5.46e+01 2bsaA 303 5.47e+01 1g3mA 294 5.48e+01 c.37.1.5 83268 1liiA 363 5.53e+01 c.72.1.1 73921 1ecfA 504 5.54e+01 1ecfB c.61.1.1,d.153.1.1 34053,41820 1up7A 417 5.57e+01 1l0wA 580 5.57e+01 b.40.4.1,d.74.4.1,d.104.1.1 73426,73427,73428 1ukgA 252 5.59e+01 b.29.1.1 99489 2bklA 695 5.60e+01 1pa1A 310 5.61e+01 c.45.1.2 94404 1wrjA 156 5.61e+01 1a78A 134 5.61e+01 1c1lA b.29.1.3 24212 1p97A 114 5.64e+01 d.110.3.7 94382 2fb1A 226 5.66e+01 2f71A 298 5.67e+01 1rlhA 173 5.71e+01 d.256.1.1 97646 2sak 121 5.73e+01 2sak d.15.5.1 37711 1kevA 351 5.75e+01 1pedA b.35.1.2,c.2.1.1 24749,29765 1vd3A 217 5.75e+01 2gaxA 135 5.75e+01 1jv4A 162 5.78e+01 b.60.1.1 67343 1jnrA 643 5.81e+01 a.7.3.1,c.3.1.4,d.168.1.1 66966,66967,66968 2etgA 296 5.85e+01 1pda 315 5.86e+01 1pda c.94.1.1,d.50.2.1 35751,38794 1s98A 107 5.91e+01 b.124.1.1 105377 3cox 507 5.91e+01 1b8sA c.3.1.2,d.16.1.1 30332,37863 1ex2A 189 5.94e+01 1ex2A c.51.4.2 33225 1xzoA 174 5.94e+01 1g1tA 157 5.96e+01 d.169.1.1,g.3.11.1 65104,65105 1mvwA 840 5.98e+01 i.15.1.1 79523 1up6A 416 6.03e+01 c.2.1.5,d.162.1.2 107976,107977 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