Best Alignments for T0342

To select the top models, SAM generates pairwise alignments of the target sequence and the best-scoring templates. The alignments with the best E-values are presented here.

Warning: E-values smaller than about 0.001 may be overly optimistic.

A2M alignment AL alignment Template E-value Alignment cost FSSP rep SCOP Domain(s)
2d1eA/T0342-2d1eA-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m 2d1eA/T0342-2d1eA-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.al 1.2067e+001.06e-05
1z6nA/T0342-1z6nA-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m 1z6nA/T0342-1z6nA-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.al 1.7817e+002.45e-03
2tct/T0342-2tct-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m 2tct/T0342-2tct-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.al 2.6593e+004.41e-05 2tct a.4.1.9
a.121.1.1
1utg/T0342-1utg-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m 1utg/T0342-1utg-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.al 3.3889e+009.44e-02 1utg a.101.1.1
1w9gA/T0342-1w9gA-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m 1w9gA/T0342-1w9gA-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.al 3.9131e+001.62e-06
1qjtA/T0342-1qjtA-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m 1qjtA/T0342-1qjtA-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.al 4.6006e+003.53e-05 1eh2 a.39.1.6
1pmzA/T0342-1pmzA-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m 1pmzA/T0342-1pmzA-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.al 5.4425e+006.28e-04 a.39.1.10
1c3pA/T0342-1c3pA-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m 1c3pA/T0342-1c3pA-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.al 5.4468e+001.19e-05 1c3pA c.42.1.2
2f9fA/T0342-2f9fA-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m 2f9fA/T0342-2f9fA-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.al 7.1189e+005.62e-04
1uekA/T0342-1uekA-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m 1uekA/T0342-1uekA-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.al 7.7188e+004.22e-03 d.14.1.5
d.58.26.5

Please cite: Karplus, K. and Karchin, R. and Barrett, C. and Tu, S. and Cline, M. and Diekhans, M. and Grate, L. and Casper, J. and Hughey, R. ``What is the value added by human intervention in protein structure prediction?'' Proteins: Structure Function and Genetics 45(S5):86-91,2001