Best Alignments for T0342

To select the top models, SAM generates pairwise alignments of the target sequence and the best-scoring templates. The alignments with the best E-values are presented here.

Warning: E-values smaller than about 0.001 may be overly optimistic.

A2M alignment AL alignment Template E-value Alignment cost FSSP rep SCOP Domain(s)
2d1eA/T0342-2d1eA-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m 2d1eA/T0342-2d1eA-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.al 9.6512e-011.49e-05
1w9gA/T0342-1w9gA-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m 1w9gA/T0342-1w9gA-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.al 1.5185e+001.62e-06
1ebbA/T0342-1ebbA-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m 1ebbA/T0342-1ebbA-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.al 1.5200e+008.61e+03 c.60.1.1
1wz7A/T0342-1wz7A-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m 1wz7A/T0342-1wz7A-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.al 2.4609e+001.07e-05
1zbmA/T0342-1zbmA-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m 1zbmA/T0342-1zbmA-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.al 2.7036e+003.81e-03
1c3pA/T0342-1c3pA-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m 1c3pA/T0342-1c3pA-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.al 3.0561e+001.19e-05 1c3pA c.42.1.2
2tct/T0342-2tct-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m 2tct/T0342-2tct-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.al 3.0666e+003.53e-03 2tct a.4.1.9
a.121.1.1
1qjtA/T0342-1qjtA-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m 1qjtA/T0342-1qjtA-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.al 3.1608e+003.53e-05 1eh2 a.39.1.6
1bjx/T0342-1bjx-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m 1bjx/T0342-1bjx-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.al 3.2199e+006.01e-05 1bjx c.47.1.2
2f9fA/T0342-2f9fA-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m 2f9fA/T0342-2f9fA-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.al 3.3186e+001.92e-03

Please cite: Karplus, K. and Karchin, R. and Barrett, C. and Tu, S. and Cline, M. and Diekhans, M. and Grate, L. and Casper, J. and Hughey, R. ``What is the value added by human intervention in protein structure prediction?'' Proteins: Structure Function and Genetics 45(S5):86-91,2001