Best Alignments for T0341

To select the top models, SAM generates pairwise alignments of the target sequence and the best-scoring templates. The alignments with the best E-values are presented here.

Warning: E-values smaller than about 0.001 may be overly optimistic.

A2M alignment AL alignment Template E-value Alignment cost FSSP rep SCOP Domain(s)
1zjjA/T0341-1zjjA-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m 1zjjA/T0341-1zjjA-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.al 5.8688e-263.79e-112
2c4nA/T0341-2c4nA-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m 2c4nA/T0341-2c4nA-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.al 5.5595e-242.62e-118
2gfhA/T0341-2gfhA-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m 2gfhA/T0341-2gfhA-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.al 4.9926e-213.76e-96
1x42A/T0341-1x42A-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m 1x42A/T0341-1x42A-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.al 1.4267e-201.18e-99
1wviA/T0341-1wviA-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m 1wviA/T0341-1wviA-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.al 5.7708e-191.36e-123
2ah5A/T0341-2ah5A-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m 2ah5A/T0341-2ah5A-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.al 7.2985e-195.66e-86
1zrn/T0341-1zrn-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m 1zrn/T0341-1zrn-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.al 1.9327e-187.79e-89 1qq5A c.108.1.1
1vjrA/T0341-1vjrA-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m 1vjrA/T0341-1vjrA-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.al 2.1615e-183.83e-120 c.108.1.14
2fdrA/T0341-2fdrA-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m 2fdrA/T0341-2fdrA-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.al 9.1579e-183.00e-87
1te2A/T0341-1te2A-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m 1te2A/T0341-1te2A-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.al 3.6641e-171.57e-81 c.108.1.6

Please cite: Karplus, K. and Karchin, R. and Barrett, C. and Tu, S. and Cline, M. and Diekhans, M. and Grate, L. and Casper, J. and Hughey, R. ``What is the value added by human intervention in protein structure prediction?'' Proteins: Structure Function and Genetics 45(S5):86-91,2001