Best Alignments for T0340

To select the top models, SAM generates pairwise alignments of the target sequence and the best-scoring templates. The alignments with the best E-values are presented here.

Warning: E-values smaller than about 0.001 may be overly optimistic.

A2M alignment AL alignment Template E-value Alignment cost FSSP rep SCOP Domain(s)
1g9oA/T0340-1g9oA-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m 1g9oA/T0340-1g9oA-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.al 7.5373e-195.71e-57 1pdr b.36.1.1
1tp5A/T0340-1tp5A-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m 1tp5A/T0340-1tp5A-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.al 1.0024e-162.21e-48
2fe5A/T0340-2fe5A-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m 2fe5A/T0340-2fe5A-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.al 3.6111e-164.91e-49
2fneA/T0340-2fneA-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m 2fneA/T0340-2fneA-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.al 4.1197e-166.41e-52
2fcfA/T0340-2fcfA-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m 2fcfA/T0340-2fcfA-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.al 2.0246e-154.62e-47
1wf7A/T0340-1wf7A-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m 1wf7A/T0340-1wf7A-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.al 6.3045e-156.97e-42
2f5yA/T0340-2f5yA-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m 2f5yA/T0340-2f5yA-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.al 1.2412e-141.53e-49
1n99A/T0340-1n99A-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m 1n99A/T0340-1n99A-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.al 2.0378e-149.74e-41 b.36.1.1
b.36.1.1
2f0aA/T0340-2f0aA-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m 2f0aA/T0340-2f0aA-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.al 2.0682e-121.85e-38
1fc6A/T0340-1fc6A-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m 1fc6A/T0340-1fc6A-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.al 3.8202e-123.83e-27 1fc6A b.36.1.3
c.14.1.2

Please cite: Karplus, K. and Karchin, R. and Barrett, C. and Tu, S. and Cline, M. and Diekhans, M. and Grate, L. and Casper, J. and Hughey, R. ``What is the value added by human intervention in protein structure prediction?'' Proteins: Structure Function and Genetics 45(S5):86-91,2001