# TARGET T0340 # Using neural net t06-IDGaaH13-3-13-7-13-9-13-11-ebghtl-stride-seeded.net # This is a 4-layer network, with # window units # 3 13 # 7 13 # 9 13 # 11 6 (1 EBGHTL ) # The input amino acid frequencies were determined from # alignment T0340.t06-thin90.a2m.gz # with weighted counts, using HenikoffWeight(1.3 bits/column, 1) # The weighting was determined by the posterior distribution # after regularizing with /projects/compbio/lib/recode3.20comp. # Counts were regularized to probabilities using # /projects/compbio/lib/recode3.20comp # Total sequence weight for alignment was 1995 # Pos AA E B G H T C 10N 1S 5N 5N 5N 5N 5N 5N 1 S 0.011 0.002 0.004 0.012 0.115 0.856 2 M 0.039 0.010 0.006 0.009 0.171 0.766 3 L 0.048 0.004 0.006 0.004 0.193 0.745 4 R 0.124 0.013 0.007 0.001 0.178 0.676 5 P 0.327 0.003 0.004 0.001 0.110 0.556 6 R 0.695 0.002 0.002 0.001 0.059 0.241 7 L 0.981 0.001 0.001 0.001 0.003 0.015 8 C 0.994 0.001 0.001 0.001 0.001 0.005 9 H 0.994 0.001 0.001 0.001 0.001 0.004 10 L 0.982 0.001 0.001 0.001 0.003 0.014 11 R 0.909 0.001 0.001 0.001 0.024 0.065 12 K 0.725 0.011 0.001 0.001 0.073 0.189 13 G 0.263 0.021 0.005 0.001 0.550 0.160 14 P 0.066 0.005 0.044 0.001 0.778 0.105 15 Q 0.050 0.005 0.059 0.001 0.781 0.104 16 G 0.219 0.014 0.032 0.001 0.585 0.150 17 Y 0.419 0.012 0.005 0.001 0.185 0.379 18 G 0.811 0.009 0.001 0.001 0.048 0.131 19 F 0.921 0.004 0.001 0.001 0.017 0.057 20 N 0.957 0.002 0.001 0.001 0.010 0.030 21 L 0.947 0.003 0.001 0.001 0.013 0.036 22 H 0.871 0.008 0.001 0.001 0.038 0.081 23 S 0.542 0.011 0.003 0.002 0.184 0.258 24 D 0.210 0.013 0.010 0.002 0.592 0.174 25 K 0.126 0.020 0.028 0.003 0.633 0.190 26 S 0.070 0.015 0.025 0.002 0.704 0.183 27 R 0.075 0.008 0.009 0.001 0.645 0.263 28 P 0.135 0.007 0.004 0.001 0.302 0.552 29 G 0.527 0.026 0.002 0.001 0.124 0.321 30 Q 0.861 0.004 0.001 0.001 0.031 0.104 31 Y 0.973 0.001 0.001 0.001 0.006 0.020 32 I 0.974 0.003 0.001 0.001 0.005 0.017 33 R 0.944 0.002 0.001 0.001 0.011 0.042 34 S 0.849 0.002 0.001 0.001 0.032 0.116 35 V 0.452 0.027 0.002 0.001 0.094 0.424 36 D 0.149 0.027 0.005 0.001 0.730 0.089 37 P 0.027 0.012 0.013 0.010 0.850 0.088 38 G 0.006 0.006 0.015 0.031 0.818 0.124 39 S 0.039 0.097 0.015 0.066 0.699 0.083 40 P 0.008 0.016 0.106 0.618 0.151 0.102 41 A 0.013 0.006 0.176 0.645 0.127 0.032 42 A 0.012 0.002 0.385 0.474 0.095 0.032 43 R 0.011 0.006 0.281 0.514 0.132 0.056 44 S 0.008 0.005 0.167 0.556 0.129 0.135 45 G 0.008 0.002 0.017 0.013 0.123 0.836 46 L 0.057 0.039 0.006 0.006 0.092 0.801 47 R 0.119 0.076 0.013 0.007 0.710 0.074 48 A 0.016 0.004 0.039 0.014 0.907 0.021 49 Q 0.008 0.001 0.037 0.017 0.918 0.020 50 D 0.466 0.022 0.020 0.010 0.465 0.015 51 R 0.862 0.019 0.002 0.011 0.026 0.081 52 L 0.957 0.005 0.002 0.012 0.010 0.016 53 I 0.960 0.001 0.003 0.016 0.009 0.013 54 E 0.961 0.001 0.002 0.019 0.010 0.006 55 V 0.863 0.006 0.004 0.047 0.073 0.008 56 N 0.309 0.004 0.005 0.085 0.532 0.065 57 G 0.111 0.002 0.004 0.022 0.693 0.168 58 Q 0.708 0.049 0.004 0.005 0.119 0.114 59 N 0.622 0.052 0.005 0.010 0.065 0.246 60 V 0.127 0.010 0.324 0.020 0.504 0.015 61 E 0.042 0.001 0.135 0.009 0.786 0.027 62 G 0.010 0.001 0.094 0.010 0.845 0.041 63 L 0.126 0.108 0.004 0.005 0.603 0.153 64 R 0.060 0.039 0.001 0.004 0.023 0.873 65 H 0.002 0.001 0.026 0.941 0.013 0.017 66 A 0.001 0.001 0.011 0.981 0.005 0.002 67 E 0.001 0.001 0.006 0.991 0.002 0.001 68 V 0.001 0.001 0.002 0.994 0.002 0.001 69 V 0.001 0.001 0.001 0.995 0.002 0.001 70 A 0.001 0.001 0.002 0.992 0.003 0.001 71 S 0.002 0.001 0.003 0.988 0.005 0.002 72 I 0.004 0.001 0.004 0.982 0.007 0.002 73 K 0.006 0.001 0.004 0.961 0.021 0.007 74 A 0.012 0.001 0.009 0.778 0.096 0.103 75 R 0.017 0.010 0.025 0.183 0.296 0.469 76 E 0.021 0.003 0.044 0.016 0.558 0.358 77 D 0.049 0.002 0.046 0.003 0.655 0.244 78 E 0.313 0.005 0.015 0.001 0.342 0.324 79 A 0.823 0.004 0.001 0.001 0.046 0.126 80 R 0.980 0.001 0.001 0.001 0.003 0.016 81 L 0.995 0.001 0.001 0.001 0.001 0.004 82 L 0.995 0.001 0.001 0.001 0.001 0.004 83 V 0.983 0.001 0.001 0.001 0.003 0.013 84 V 0.867 0.002 0.001 0.001 0.015 0.115 85 G 0.432 0.010 0.002 0.002 0.153 0.402 86 P 0.086 0.006 0.009 0.004 0.340 0.555 87 S 0.024 0.006 0.010 0.004 0.313 0.642 88 T 0.065 0.023 0.023 0.010 0.317 0.562 89 R 0.037 0.018 0.012 0.018 0.139 0.776 90 L 0.008 0.002 0.001 0.004 0.039 0.946