# TARGET T0340 # Using neural net t06-IDGaaH13-3-13-7-13-9-13-11-ebghstl-dssp-seeded.net # This is a 4-layer network, with # window units # 3 13 # 7 13 # 9 13 # 11 7 (1 EBGHSTL ) # The input amino acid frequencies were determined from # alignment T0340.t06-thin90.a2m.gz # with weighted counts, using HenikoffWeight(1.3 bits/column, 1) # The weighting was determined by the posterior distribution # after regularizing with /projects/compbio/lib/recode3.20comp. # Counts were regularized to probabilities using # /projects/compbio/lib/recode3.20comp # Total sequence weight for alignment was 1995 # Pos AA E B G H S T C 10N 1S 5N 5N 5N 5N 5N 5N 5N 1 S 0.002 0.001 0.001 0.001 0.001 0.001 0.996 2 M 0.048 0.021 0.010 0.007 0.012 0.028 0.875 3 L 0.086 0.007 0.027 0.006 0.312 0.098 0.464 4 R 0.210 0.004 0.010 0.001 0.195 0.043 0.538 5 P 0.370 0.002 0.002 0.001 0.022 0.003 0.600 6 R 0.878 0.002 0.001 0.001 0.046 0.001 0.073 7 L 0.968 0.001 0.001 0.001 0.001 0.001 0.030 8 C 0.978 0.001 0.001 0.001 0.001 0.001 0.021 9 H 0.996 0.001 0.001 0.001 0.001 0.001 0.003 10 L 0.977 0.001 0.001 0.001 0.001 0.001 0.022 11 R 0.870 0.002 0.001 0.001 0.020 0.003 0.105 12 K 0.545 0.014 0.001 0.001 0.107 0.019 0.314 13 G 0.146 0.009 0.004 0.001 0.290 0.084 0.467 14 P 0.049 0.008 0.024 0.001 0.268 0.473 0.176 15 Q 0.030 0.009 0.046 0.001 0.282 0.483 0.150 16 G 0.145 0.017 0.045 0.001 0.213 0.163 0.417 17 Y 0.436 0.020 0.017 0.001 0.148 0.059 0.319 18 G 0.873 0.009 0.004 0.001 0.028 0.012 0.073 19 F 0.954 0.002 0.001 0.001 0.004 0.002 0.036 20 N 0.981 0.003 0.001 0.001 0.002 0.001 0.012 21 L 0.966 0.003 0.001 0.001 0.001 0.002 0.027 22 H 0.868 0.006 0.001 0.002 0.024 0.016 0.083 23 S 0.544 0.012 0.005 0.003 0.098 0.085 0.254 24 D 0.181 0.011 0.013 0.001 0.295 0.153 0.345 25 K 0.175 0.028 0.026 0.002 0.306 0.238 0.225 26 S 0.092 0.019 0.032 0.001 0.326 0.248 0.281 27 R 0.097 0.011 0.028 0.001 0.326 0.077 0.460 28 P 0.120 0.011 0.048 0.003 0.255 0.227 0.335 29 G 0.512 0.019 0.030 0.001 0.110 0.111 0.217 30 Q 0.836 0.006 0.004 0.001 0.017 0.006 0.130 31 Y 0.963 0.007 0.001 0.001 0.002 0.002 0.025 32 I 0.966 0.002 0.001 0.001 0.001 0.001 0.029 33 R 0.946 0.001 0.001 0.001 0.013 0.001 0.037 34 S 0.866 0.007 0.001 0.001 0.021 0.003 0.101 35 V 0.389 0.055 0.001 0.001 0.129 0.007 0.419 36 D 0.057 0.006 0.001 0.001 0.112 0.005 0.820 37 P 0.002 0.001 0.003 0.002 0.064 0.903 0.024 38 G 0.002 0.003 0.003 0.009 0.256 0.667 0.061 39 S 0.003 0.022 0.001 0.037 0.246 0.007 0.684 40 P 0.001 0.002 0.004 0.954 0.005 0.028 0.008 41 A 0.001 0.001 0.025 0.915 0.008 0.043 0.007 42 A 0.004 0.005 0.099 0.813 0.009 0.031 0.040 43 R 0.004 0.010 0.113 0.743 0.024 0.085 0.021 44 S 0.005 0.003 0.033 0.219 0.029 0.685 0.027 45 G 0.010 0.005 0.022 0.061 0.092 0.602 0.208 46 L 0.015 0.032 0.002 0.005 0.154 0.006 0.785 47 R 0.030 0.004 0.002 0.001 0.043 0.004 0.916 48 A 0.003 0.003 0.053 0.012 0.127 0.785 0.017 49 Q 0.027 0.001 0.045 0.004 0.064 0.807 0.051 50 D 0.118 0.003 0.009 0.001 0.112 0.011 0.746 51 R 0.874 0.006 0.001 0.001 0.005 0.002 0.112 52 L 0.982 0.001 0.001 0.001 0.002 0.001 0.014 53 I 0.989 0.001 0.001 0.001 0.001 0.001 0.008 54 E 0.959 0.001 0.001 0.001 0.002 0.001 0.035 55 V 0.860 0.007 0.002 0.001 0.010 0.013 0.107 56 N 0.453 0.006 0.005 0.003 0.073 0.345 0.115 57 G 0.127 0.003 0.007 0.001 0.271 0.491 0.100 58 Q 0.417 0.047 0.013 0.002 0.204 0.072 0.245 59 N 0.478 0.075 0.012 0.003 0.064 0.045 0.324 60 V 0.218 0.025 0.154 0.012 0.104 0.139 0.347 61 E 0.079 0.008 0.172 0.019 0.104 0.496 0.121 62 G 0.037 0.006 0.092 0.014 0.193 0.509 0.148 63 L 0.065 0.025 0.004 0.010 0.182 0.012 0.702 64 R 0.058 0.055 0.002 0.016 0.033 0.005 0.830 65 H 0.002 0.001 0.009 0.962 0.004 0.010 0.012 66 A 0.001 0.001 0.003 0.992 0.001 0.003 0.001 67 E 0.001 0.001 0.004 0.992 0.001 0.002 0.001 68 V 0.001 0.001 0.001 0.996 0.001 0.002 0.001 69 V 0.001 0.001 0.001 0.996 0.001 0.002 0.001 70 A 0.001 0.001 0.001 0.992 0.001 0.006 0.001 71 S 0.001 0.001 0.001 0.984 0.001 0.012 0.001 72 I 0.004 0.003 0.006 0.952 0.003 0.027 0.004 73 K 0.004 0.002 0.019 0.833 0.008 0.123 0.010 74 A 0.005 0.001 0.027 0.567 0.020 0.355 0.025 75 R 0.018 0.005 0.032 0.054 0.302 0.278 0.310 76 E 0.010 0.001 0.022 0.002 0.301 0.422 0.242 77 D 0.069 0.001 0.009 0.001 0.545 0.130 0.245 78 E 0.750 0.007 0.003 0.001 0.048 0.006 0.187 79 A 0.985 0.001 0.001 0.001 0.002 0.001 0.012 80 R 0.996 0.001 0.001 0.001 0.001 0.001 0.003 81 L 0.996 0.001 0.001 0.001 0.001 0.001 0.003 82 L 0.988 0.001 0.001 0.001 0.001 0.001 0.011 83 V 0.975 0.001 0.001 0.001 0.002 0.001 0.022 84 V 0.747 0.009 0.001 0.001 0.045 0.003 0.196 85 G 0.211 0.009 0.001 0.001 0.113 0.012 0.653 86 P 0.020 0.002 0.011 0.001 0.202 0.154 0.610 87 S 0.017 0.012 0.039 0.003 0.191 0.188 0.550 88 T 0.030 0.010 0.052 0.008 0.246 0.115 0.539 89 R 0.033 0.023 0.019 0.006 0.036 0.056 0.828 90 L 0.007 0.002 0.002 0.001 0.005 0.001 0.982