# TARGET T0340 # Using neural net t04-2621-IDGaaH13-3-13-7-13-9-13-11-ebghtl-stride-seeded.net # This is a 4-layer network, with # window units # 3 13 # 7 13 # 9 13 # 11 6 (1 EBGHTL ) # The input amino acid frequencies were determined from # alignment T0340.t04-thin90.a2m.gz # with weighted counts, using HenikoffWeight(1.3 bits/column, 1) # The weighting was determined by the posterior distribution # after regularizing with /projects/compbio/lib/recode3.20comp. # Counts were regularized to probabilities using # /projects/compbio/lib/recode3.20comp # Total sequence weight for alignment was 1647.22 # Pos AA E B G H T C 10N 1S 5N 5N 5N 5N 5N 5N 1 S 0.031 0.006 0.028 0.016 0.314 0.604 2 M 0.051 0.009 0.033 0.012 0.273 0.621 3 L 0.086 0.013 0.012 0.003 0.216 0.670 4 R 0.189 0.016 0.004 0.001 0.159 0.631 5 P 0.471 0.005 0.002 0.001 0.073 0.449 6 R 0.878 0.002 0.001 0.001 0.020 0.099 7 L 0.992 0.001 0.001 0.001 0.002 0.006 8 C 0.997 0.001 0.001 0.001 0.001 0.002 9 H 0.995 0.001 0.001 0.001 0.001 0.004 10 L 0.975 0.001 0.001 0.001 0.003 0.021 11 R 0.899 0.001 0.001 0.001 0.032 0.067 12 K 0.634 0.016 0.001 0.001 0.114 0.234 13 G 0.203 0.027 0.004 0.001 0.621 0.143 14 P 0.068 0.012 0.021 0.001 0.816 0.081 15 Q 0.049 0.002 0.039 0.001 0.809 0.100 16 G 0.176 0.011 0.036 0.001 0.683 0.094 17 Y 0.314 0.008 0.007 0.001 0.323 0.348 18 G 0.658 0.015 0.003 0.001 0.092 0.232 19 F 0.898 0.008 0.001 0.001 0.022 0.070 20 N 0.943 0.004 0.001 0.001 0.012 0.039 21 L 0.942 0.003 0.001 0.001 0.015 0.038 22 H 0.823 0.006 0.002 0.001 0.063 0.105 23 S 0.491 0.014 0.005 0.001 0.214 0.275 24 D 0.215 0.020 0.008 0.001 0.549 0.207 25 K 0.161 0.027 0.033 0.002 0.587 0.191 26 S 0.127 0.019 0.034 0.002 0.623 0.195 27 R 0.083 0.010 0.022 0.001 0.733 0.151 28 P 0.086 0.005 0.009 0.001 0.509 0.391 29 G 0.233 0.015 0.003 0.001 0.297 0.450 30 Q 0.738 0.011 0.001 0.001 0.083 0.166 31 Y 0.951 0.003 0.001 0.001 0.010 0.035 32 I 0.979 0.002 0.001 0.001 0.006 0.013 33 R 0.964 0.001 0.001 0.001 0.008 0.026 34 S 0.893 0.002 0.001 0.001 0.024 0.080 35 V 0.542 0.018 0.002 0.001 0.088 0.350 36 D 0.166 0.028 0.005 0.001 0.690 0.109 37 P 0.021 0.008 0.014 0.007 0.849 0.101 38 G 0.006 0.006 0.015 0.016 0.821 0.136 39 S 0.023 0.021 0.011 0.032 0.742 0.171 40 P 0.003 0.004 0.118 0.725 0.100 0.049 41 A 0.006 0.009 0.135 0.747 0.083 0.019 42 A 0.007 0.003 0.278 0.640 0.060 0.012 43 R 0.016 0.005 0.152 0.716 0.073 0.038 44 S 0.016 0.004 0.090 0.698 0.113 0.079 45 G 0.028 0.004 0.039 0.171 0.195 0.564 46 L 0.057 0.022 0.002 0.008 0.075 0.835 47 R 0.215 0.041 0.011 0.012 0.407 0.314 48 A 0.165 0.016 0.037 0.015 0.604 0.163 49 Q 0.071 0.004 0.030 0.007 0.780 0.108 50 D 0.521 0.007 0.016 0.002 0.382 0.072 51 R 0.916 0.006 0.002 0.002 0.021 0.053 52 L 0.984 0.001 0.001 0.001 0.005 0.008 53 I 0.992 0.001 0.001 0.001 0.001 0.004 54 E 0.987 0.001 0.001 0.001 0.004 0.007 55 V 0.910 0.003 0.001 0.003 0.057 0.028 56 N 0.527 0.004 0.002 0.005 0.351 0.110 57 G 0.349 0.009 0.005 0.005 0.506 0.127 58 Q 0.690 0.028 0.005 0.004 0.169 0.104 59 N 0.646 0.047 0.004 0.007 0.100 0.196 60 V 0.186 0.019 0.046 0.012 0.722 0.015 61 E 0.073 0.003 0.027 0.006 0.862 0.028 62 G 0.011 0.001 0.039 0.009 0.909 0.030 63 L 0.079 0.087 0.005 0.009 0.678 0.142 64 R 0.046 0.022 0.001 0.016 0.034 0.881 65 H 0.001 0.001 0.004 0.989 0.002 0.004 66 A 0.001 0.001 0.001 0.998 0.001 0.001 67 E 0.001 0.001 0.001 0.998 0.001 0.001 68 V 0.001 0.001 0.001 0.998 0.001 0.001 69 V 0.001 0.001 0.001 0.998 0.001 0.001 70 A 0.001 0.001 0.001 0.995 0.002 0.001 71 S 0.002 0.001 0.003 0.989 0.005 0.002 72 I 0.003 0.001 0.004 0.983 0.006 0.003 73 K 0.006 0.001 0.006 0.965 0.014 0.009 74 A 0.008 0.002 0.013 0.742 0.078 0.156 75 R 0.008 0.008 0.054 0.188 0.301 0.441 76 E 0.018 0.007 0.065 0.013 0.616 0.280 77 D 0.044 0.002 0.070 0.003 0.655 0.226 78 E 0.489 0.011 0.012 0.001 0.214 0.273 79 A 0.897 0.003 0.001 0.001 0.026 0.073 80 R 0.973 0.001 0.001 0.001 0.005 0.021 81 L 0.995 0.001 0.001 0.001 0.001 0.004 82 L 0.994 0.001 0.001 0.001 0.001 0.005 83 V 0.986 0.001 0.001 0.001 0.003 0.010 84 V 0.874 0.003 0.001 0.001 0.020 0.102 85 G 0.406 0.011 0.002 0.003 0.280 0.298 86 P 0.060 0.006 0.004 0.003 0.532 0.395 87 S 0.018 0.007 0.014 0.004 0.569 0.387 88 T 0.024 0.021 0.017 0.007 0.497 0.435 89 R 0.016 0.018 0.006 0.010 0.169 0.779 90 L 0.010 0.005 0.001 0.003 0.053 0.927