# TARGET T0340 # Using neural net t06-IDGaaH13-3-13-7-13-9-13-11-ebghstl-dssp-seeded.net # This is a 4-layer network, with # window units # 3 13 # 7 13 # 9 13 # 11 7 (1 EBGHSTL ) # The input amino acid frequencies were determined from # alignment T0340.t04-thin90.a2m.gz # with weighted counts, using HenikoffWeight(1.3 bits/column, 1) # The weighting was determined by the posterior distribution # after regularizing with /projects/compbio/lib/recode3.20comp. # Counts were regularized to probabilities using # /projects/compbio/lib/recode3.20comp # Total sequence weight for alignment was 1647.22 # Pos AA E B G H S T C 10N 1S 5N 5N 5N 5N 5N 5N 5N 1 S 0.001 0.001 0.001 0.001 0.001 0.001 0.996 2 M 0.046 0.020 0.010 0.006 0.012 0.027 0.879 3 L 0.080 0.007 0.026 0.006 0.312 0.098 0.471 4 R 0.205 0.004 0.009 0.001 0.193 0.040 0.549 5 P 0.358 0.002 0.002 0.001 0.020 0.003 0.615 6 R 0.878 0.001 0.001 0.001 0.047 0.001 0.072 7 L 0.967 0.001 0.001 0.001 0.001 0.001 0.031 8 C 0.977 0.001 0.001 0.001 0.001 0.001 0.022 9 H 0.996 0.001 0.001 0.001 0.001 0.001 0.003 10 L 0.978 0.001 0.001 0.001 0.001 0.001 0.021 11 R 0.877 0.002 0.001 0.001 0.018 0.003 0.099 12 K 0.554 0.014 0.001 0.001 0.098 0.015 0.318 13 G 0.141 0.009 0.003 0.001 0.292 0.079 0.476 14 P 0.044 0.008 0.022 0.001 0.268 0.487 0.171 15 Q 0.027 0.009 0.044 0.001 0.282 0.495 0.143 16 G 0.127 0.017 0.046 0.001 0.214 0.178 0.417 17 Y 0.407 0.021 0.019 0.001 0.160 0.064 0.329 18 G 0.864 0.010 0.005 0.001 0.029 0.013 0.079 19 F 0.950 0.002 0.001 0.001 0.005 0.002 0.039 20 N 0.980 0.003 0.001 0.001 0.002 0.001 0.012 21 L 0.966 0.002 0.001 0.001 0.001 0.002 0.026 22 H 0.865 0.007 0.001 0.002 0.026 0.017 0.082 23 S 0.536 0.013 0.005 0.002 0.100 0.077 0.267 24 D 0.185 0.012 0.016 0.002 0.291 0.157 0.337 25 K 0.152 0.025 0.035 0.002 0.261 0.331 0.194 26 S 0.076 0.017 0.043 0.002 0.305 0.314 0.244 27 R 0.098 0.014 0.027 0.001 0.328 0.065 0.465 28 P 0.083 0.010 0.047 0.003 0.264 0.338 0.255 29 G 0.414 0.013 0.032 0.001 0.130 0.215 0.195 30 Q 0.817 0.007 0.004 0.001 0.016 0.005 0.150 31 Y 0.960 0.008 0.001 0.001 0.002 0.002 0.027 32 I 0.958 0.003 0.001 0.001 0.002 0.001 0.036 33 R 0.941 0.001 0.001 0.001 0.014 0.001 0.041 34 S 0.861 0.007 0.001 0.001 0.024 0.003 0.103 35 V 0.420 0.062 0.001 0.001 0.120 0.006 0.390 36 D 0.066 0.006 0.001 0.001 0.101 0.004 0.822 37 P 0.002 0.001 0.004 0.002 0.058 0.908 0.025 38 G 0.002 0.003 0.003 0.009 0.248 0.676 0.060 39 S 0.003 0.020 0.001 0.036 0.255 0.008 0.678 40 P 0.001 0.001 0.004 0.955 0.004 0.027 0.008 41 A 0.001 0.001 0.024 0.920 0.007 0.041 0.007 42 A 0.003 0.004 0.093 0.828 0.008 0.029 0.034 43 R 0.003 0.009 0.109 0.759 0.021 0.081 0.018 44 S 0.004 0.002 0.032 0.235 0.027 0.675 0.025 45 G 0.010 0.005 0.022 0.068 0.087 0.605 0.203 46 L 0.015 0.033 0.003 0.006 0.158 0.007 0.779 47 R 0.030 0.004 0.002 0.001 0.046 0.004 0.912 48 A 0.003 0.003 0.057 0.013 0.120 0.788 0.017 49 Q 0.026 0.001 0.048 0.004 0.065 0.801 0.054 50 D 0.109 0.003 0.009 0.001 0.127 0.012 0.740 51 R 0.870 0.006 0.001 0.001 0.005 0.002 0.116 52 L 0.983 0.001 0.001 0.001 0.001 0.001 0.014 53 I 0.989 0.001 0.001 0.001 0.001 0.001 0.008 54 E 0.961 0.001 0.001 0.001 0.002 0.001 0.033 55 V 0.859 0.007 0.002 0.001 0.010 0.012 0.109 56 N 0.458 0.007 0.005 0.003 0.077 0.323 0.127 57 G 0.127 0.003 0.008 0.001 0.281 0.474 0.106 58 Q 0.393 0.045 0.014 0.003 0.213 0.078 0.254 59 N 0.452 0.073 0.014 0.003 0.071 0.050 0.338 60 V 0.204 0.025 0.160 0.014 0.106 0.139 0.352 61 E 0.079 0.008 0.177 0.022 0.106 0.479 0.130 62 G 0.037 0.007 0.095 0.018 0.189 0.500 0.155 63 L 0.061 0.022 0.005 0.013 0.167 0.013 0.719 64 R 0.056 0.052 0.002 0.022 0.035 0.007 0.827 65 H 0.002 0.001 0.009 0.956 0.005 0.012 0.015 66 A 0.001 0.001 0.003 0.992 0.001 0.003 0.001 67 E 0.001 0.001 0.004 0.993 0.001 0.002 0.001 68 V 0.001 0.001 0.001 0.996 0.001 0.001 0.001 69 V 0.001 0.001 0.001 0.997 0.001 0.002 0.001 70 A 0.001 0.001 0.001 0.994 0.001 0.005 0.001 71 S 0.001 0.001 0.001 0.987 0.001 0.010 0.001 72 I 0.003 0.002 0.005 0.962 0.002 0.023 0.003 73 K 0.003 0.002 0.019 0.848 0.006 0.115 0.007 74 A 0.004 0.001 0.029 0.554 0.015 0.379 0.019 75 R 0.017 0.006 0.032 0.052 0.316 0.255 0.322 76 E 0.010 0.001 0.026 0.002 0.304 0.418 0.239 77 D 0.071 0.001 0.012 0.001 0.540 0.159 0.216 78 E 0.741 0.007 0.003 0.001 0.049 0.007 0.192 79 A 0.983 0.001 0.001 0.001 0.003 0.001 0.013 80 R 0.995 0.001 0.001 0.001 0.001 0.001 0.004 81 L 0.996 0.001 0.001 0.001 0.001 0.001 0.004 82 L 0.989 0.001 0.001 0.001 0.001 0.001 0.010 83 V 0.979 0.001 0.001 0.001 0.001 0.001 0.018 84 V 0.781 0.009 0.001 0.001 0.036 0.002 0.171 85 G 0.171 0.010 0.001 0.001 0.104 0.006 0.708 86 P 0.015 0.002 0.011 0.001 0.290 0.271 0.411 87 S 0.011 0.015 0.024 0.002 0.215 0.353 0.380 88 T 0.015 0.009 0.031 0.006 0.237 0.074 0.628 89 R 0.025 0.020 0.018 0.008 0.067 0.082 0.779 90 L 0.020 0.006 0.013 0.010 0.049 0.012 0.890