# List of top-scoring protein chains for t04-100-30-stride-ebghtl-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # # FSSP representative for each protein chain taken from FSSP: # ------------------Citations (FSSP) ----------------------------------- # L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue FSSP-rep SCOP_domain SCOP_suid 5S 5N 12S 6S 12S 10N 1g9oA 91 3.06e-19 1pdr b.36.1.1 60400 2fe5A 94 2.84e-18 1tp5A 119 3.62e-18 1be9A 119 4.66e-18 1pdr b.36.1.1 24774 2fcfA 103 1.12e-17 2fneA 117 7.94e-17 1qavA 90 1.79e-16 1qauA b.36.1.1 24777 1n7fA 97 3.22e-16 b.36.1.1 91692 1n7eA 97 5.67e-16 b.36.1.1 91691 1q3oA 109 8.91e-16 b.36.1.1 95700 2f0aA 98 5.40e-15 1wf7A 103 7.90e-15 2f5yA 91 1.05e-14 1l6oA 95 1.17e-14 b.36.1.1 84534 1ihjA 98 3.08e-14 1pdr b.36.1.1 62382 1qauA 112 4.43e-14 1qauA b.36.1.1 24779 1nf3C 128 4.68e-14 b.36.1.1 85596 1kwaA 88 5.62e-14 1kwaA b.36.1.1 24772 1mfgA 95 2.87e-13 b.36.1.1 79043 1nteA 82 3.47e-13 b.36.1.1 86163 1r6jA 82 3.47e-13 b.36.1.1 97151 1v5lA 103 4.52e-13 b.36.1.1 108378 1fc6A 388 8.44e-09 1fc6A b.36.1.3,c.14.1.2 64738,64739 1lcyA 325 3.51e-06 b.36.1.4,b.47.1.1 73834,73835 1te0A 318 1.99e-05 1y8tA 324 2.57e-04 1zn8A 180 1.75e-02 1sotA 320 2.24e-02 b.36.1.4,b.47.1.1 105852,105853 1fxlA 167 1.19e-01 1b7fA d.58.7.1,d.58.7.1 39183,39184 1x3mA 415 1.30e-01 2g8oA 264 2.19e-01 2g8mA 264 2.23e-01 1qqqA 264 2.26e-01 1bkpA d.117.1.1 40931 1evfA 264 2.29e-01 1bkpA d.117.1.1 40932 1qb7A 236 3.63e-01 1qb7A c.61.1.1 34087 2bw3A 534 3.95e-01 1hvyA 288 1.16e+00 1bkpA d.117.1.1 41049 1xv5A 401 1.40e+00 1cliA 345 1.61e+00 1cliA d.79.4.1,d.139.1.1 39816,41459 1l1qA 186 1.62e+00 c.61.1.1 77653 1w30A 201 1.71e+00 1ad3A 452 1.85e+00 1ad3A c.82.1.1 35335 1vdmA 153 1.92e+00 1vpqA 273 1.96e+00 1ypvA 313 1.96e+00 1rypB 250 2.50e+00 1rypB d.153.1.4 41933 1xx6A 191 2.86e+00 1g2qA 187 3.38e+00 c.61.1.1 65117 1bx4A 345 3.79e+00 1bx4A c.72.1.1 34935 1zm8A 259 3.82e+00 1db3A 372 4.03e+00 1db3A c.2.1.2 29813 1fsgA 233 4.42e+00 1qk3A c.61.1.1 34029 1fdr 248 4.43e+00 1fdr b.43.4.2,c.25.1.1 25653,31543 1vchA 175 4.45e+00 1fwkA 296 4.57e+00 1fwkA d.14.1.5,d.58.26.1 37576,39398 1t6t1 118 4.58e+00 1o63A 219 4.65e+00 c.94.1.1 92540 1opr 213 4.82e+00 1opr c.61.1.1 34091 1q1rA 431 4.97e+00 c.3.1.5,c.3.1.5,d.87.1.1 95600,95601,95602 1y96A 86 5.18e+00 2az4A 429 5.19e+00 1q52A 314 5.84e+00 c.14.1.3 95846 1g57A 217 5.96e+00 1g57A d.115.1.2 60253 1h3gA 601 6.35e+00 b.1.18.2,b.71.1.1,c.1.8.1 90594,90595,90596 1r13A 148 6.35e+00 d.169.1.1,h.1.1.1 96782,96783 1o57A 291 6.42e+00 a.4.5.40,c.61.1.1 92483,92484 1zq1C 633 6.80e+00 2bnjA 303 7.04e+00 1cq3A 233 7.38e+00 1cq3A b.27.1.1 23923 1w77A 228 7.72e+00 1uc2A 481 7.93e+00 d.261.1.1 99161 1wnfA 328 8.16e+00 1a8y 367 8.69e+00 1a8y c.47.1.3,c.47.1.3,c.47.1.3 32781,32782,32783 1bzyA 217 8.98e+00 1qk3A c.61.1.1 34071 1nonA 179 9.28e+00 c.61.1.1 103868 1wlsA 328 9.43e+00 1u9yA 284 9.50e+00 1i1wA 303 9.58e+00 c.1.8.3 76732 1oroA 213 9.64e+00 1opr c.61.1.1 34093 2bh8A 101 9.75e+00 1i52A 236 9.95e+00 1i52A c.68.1.13 61767 1jalA 363 1.01e+01 c.37.1.8,d.15.10.2 84138,84139 1b25A 619 1.15e+01 1b25A a.110.1.1,d.152.1.1 19044,41796 1lh0A 213 1.17e+01 c.61.1.1 73896 1vybA 238 1.18e+01 d.151.1.1 108897 1un8A 552 1.18e+01 c.119.1.2,a.208.1.1 103806,99661 2b4aA 138 1.18e+01 1h72C 296 1.22e+01 d.14.1.5,d.58.26.1 60712,60713 1y0bA 197 1.30e+01 1bu6O 501 1.31e+01 1glcG c.55.1.4,c.55.1.4 33499,33500 1ugmA 125 1.45e+01 d.15.1.3 107827 1fjrA 195 1.46e+01 1fjrA b.102.1.1 59855 1r31A 428 1.55e+01 d.58.20.1,d.179.1.1 96897,96898 2f7fA 494 1.65e+01 1vhxA 150 1.66e+01 c.55.3.8 100712 1vkmA 297 1.71e+01 c.138.1.1 108670 1zq9A 285 1.75e+01 1xznA 179 1.80e+01 1i6pA 220 1.82e+01 1ddzA c.53.2.1 61848 1zsyA 357 1.86e+01 2furA 209 1.89e+01 1w78A 422 1.89e+01 2agcA 162 1.94e+01 1cjbA 231 2.04e+01 1qk3A c.61.1.1 34079 1l0bA 229 2.07e+01 c.15.1.3,c.15.1.3 73391,73392 1ha1 184 2.09e+01 1ha1 d.58.7.1,d.58.7.1 39147,39148 1vzoA 355 2.12e+01 d.144.1.7 108971 1a62 130 2.15e+01 1a62 a.140.3.1,b.40.4.5 64708,64709 1gjjA 168 2.15e+01 a.140.1.1,a.140.1.1 83291,83292 1dmgA 225 2.23e+01 1dmgA c.22.1.1 31036 1yloA 348 2.25e+01 1vheA 373 2.28e+01 b.49.3.1,c.56.5.4 100669,100670 1ti6A 875 2.29e+01 b.52.2.2,c.81.1.1 106974,106975 1fr3A 67 2.36e+01 1fr3A b.40.6.1 25436 1zxxA 319 2.38e+01 1hgxA 183 2.52e+01 1tc1A c.61.1.1 34027 1rpxA 230 2.53e+01 1rpxA c.1.2.2 28536 1ta3B 303 2.59e+01 c.1.8.3 106732 1p42A 270 2.63e+01 d.14.1.7,d.14.1.7 87754,87755 2ghpA 292 2.64e+01 1a8vA 121 2.68e+01 1a62 a.140.3.1,b.40.4.5 64712,64713 1cl1A 395 2.69e+01 1cl2A c.67.1.3 34395 1ukvG 453 2.74e+01 c.3.1.3,c.3.1.3,d.16.1.6 107915,107916,107917 2d4pA 141 2.74e+01 2c9aA 259 2.77e+01 2bhoA 130 2.81e+01 1yb2A 275 2.83e+01 1wkvA 389 2.86e+01 1vj0A 380 2.87e+01 b.35.1.2,c.2.1.1 100786,100787 1evhA 112 2.91e+01 1evhA b.55.1.4 26997 1o3yA 166 2.96e+01 c.37.1.8 86618 1kcbA 340 3.04e+01 b.6.1.3,b.6.1.3 90951,90952 1uh5A 329 3.07e+01 c.2.1.2 107840 1bg4 302 3.10e+01 1taxA c.1.8.3 28806 1ecfA 504 3.12e+01 1ecfB c.61.1.1,d.153.1.1 34053,41820 2bsyA 278 3.26e+01 1wd5A 208 3.26e+01 1rwzA 245 3.27e+01 d.131.1.2,d.131.1.2 98005,98006 1lw6I 64 3.28e+01 d.40.1.1 74294 1to2I 64 3.29e+01 2evaA 307 3.45e+01 2cwaA 263 3.48e+01 1mkmA 249 3.52e+01 a.4.5.33,d.110.2.2 79242,79243 1o97D 320 3.55e+01 c.26.2.3,c.31.1.2 81233,81234 2cc0A 195 3.61e+01 2adcA 229 3.67e+01 2f1rA 171 3.77e+01 1h65A 270 3.82e+01 c.37.1.8 65640 1vz6A 393 3.84e+01 d.154.1.2 108949 1llnA 262 4.03e+01 d.165.1.1 84625 1wexA 104 4.14e+01 1h4aX 173 4.18e+01 b.11.1.1,b.11.1.1 83479,83480 1qgdA 662 4.23e+01 c.36.1.6,c.36.1.10,c.48.1.1 88367,88368,88369 1f28A 297 4.28e+01 1bkpA d.117.1.1 59608 1o6dA 163 4.39e+01 c.116.1.3 92567 2bcgG 453 4.39e+01 2fa1A 160 4.47e+01 1yioA 208 4.53e+01 1wvcA 259 4.77e+01 1xtqA 177 4.78e+01 2fvgA 340 4.79e+01 1fxrA 64 4.86e+01 1fxd d.58.1.4 38993 2bsjA 133 4.87e+01 1uzcA 71 4.89e+01 a.159.2.1 100222 1idk 359 4.96e+01 1qcxA b.80.1.2 28025 1d8cA 723 4.96e+01 1d8cA c.1.13.1 29325 1viuA 203 5.04e+01 d.113.1.1 100771 2ckiA 262 5.04e+01 1y791 680 5.08e+01 1efvA 315 5.19e+01 1efvA c.26.2.3,c.31.1.2 31633,31728 1fjgK 129 5.21e+01 1fjfK c.55.4.1 33733 1oq1A 223 5.22e+01 b.29.1.17 93408 1a04A 215 5.28e+01 1a04A a.4.6.2,c.23.1.1 16234,31089 1p99A 295 5.32e+01 c.94.1.1 94384 1tyv 542 5.42e+01 1tyv b.80.1.6 28038 1lgpA 116 5.45e+01 b.26.1.2 73890 1rf6A 427 5.54e+01 d.68.2.2 97366 1g3qA 237 5.57e+01 1hyqA c.37.1.10 60237 1js8A 394 5.58e+01 a.86.1.1,b.112.1.1 67219,67220 1mjc 69 5.59e+01 1mjc b.40.4.5 25319 1hurA 180 5.63e+01 1hurA c.37.1.8 32052 1vcaA 202 5.65e+01 1vcaA b.1.1.3,b.1.1.4 21649,21685 1sjqA 105 5.75e+01 d.58.7.1 105660 1kw4A 89 5.88e+01 a.60.1.2 73077 1z90A 469 5.90e+01 1nif 340 5.92e+01 1nif b.6.1.3,b.6.1.3 23048,23049 1lnzA 342 5.95e+01 b.117.1.1,c.37.1.8 78112,78113 2fl4A 149 6.00e+01 1s1iG 119 6.06e+01 i.1.1.1 105181 1z6aA 500 6.06e+01 1v0aA 178 6.10e+01 1p35A 299 6.12e+01 1p35A b.28.1.1 23925 1r4aA 165 6.12e+01 c.37.1.8 96986 1vraB 215 6.18e+01 1tzfA 259 6.26e+01 c.68.1.13 107476 2cw5A 255 6.32e+01 1p7tA 731 6.33e+01 c.1.13.1 94319 1mo1A 87 6.35e+01 d.94.1.1 91363 2b6hA 192 6.49e+01 1uarA 285 6.49e+01 c.46.1.2,c.46.1.2 107762,107763 1uptC 170 6.53e+01 c.37.1.8 99769 2c9wA 169 6.54e+01 1u5vA 273 6.63e+01 1j5pA 253 6.63e+01 d.81.1.3,c.2.1.3 71577,83092 1ys7A 233 6.66e+01 1u5hA 273 6.68e+01 1gg6B 131 6.71e+01 5ptp 1yg9A 330 6.76e+01 1nepA 130 6.80e+01 b.1.18.7 80440 1yphC 131 6.86e+01 1yqgA 263 6.94e+01 1p2fA 220 6.95e+01 a.4.6.1,c.23.1.1 87720,87721 1wl4A 397 7.00e+01 1xa1A 255 7.04e+01 e.3.1.1 109529 1b63A 333 7.08e+01 1b63A d.14.1.3,d.122.1.2 37566,41107 2anuA 255 7.12e+01 1o5oA 221 7.12e+01 c.61.1.1 92509 1amm 174 7.14e+01 1amm b.11.1.1,b.11.1.1 23587,23588 1ueoA 63 7.22e+01 j.107.1.1 99269 1xkzA 255 7.25e+01 2bw4A 340 7.27e+01 1z08A 170 7.28e+01 2ffmA 91 7.33e+01 1rurH 218 7.39e+01 b.1.1.1,b.1.1.2 97879,97880 4gcr 174 7.41e+01 1amm b.11.1.1,b.11.1.1 23589,23590 1xdnA 277 7.49e+01 2bshA 125 7.53e+01 1sdwA 314 7.56e+01 b.121.1.2,b.121.1.2 98810,98811 1b5tA 275 7.57e+01 1b5tA c.1.23.1 29676 1xhfA 123 7.74e+01 1euwA 152 7.76e+01 1dupA b.85.4.1 28349 1gctA 245 7.80e+01 5ptp b.47.1.2 26021 1svy 114 7.81e+01 1svy d.109.1.1 40831 1gvhA 396 7.94e+01 a.1.1.2,b.43.4.2,c.25.1.5 70601,70602,70603 2fxqA 264 7.96e+01 1voqa 90 8.03e+01 1hw7A 255 8.04e+01 1i7fA d.193.1.1 61297 1kshA 186 8.19e+01 c.37.1.8 72914 1bkpA 278 8.23e+01 1bkpA d.117.1.1 41029 1se8A 301 8.30e+01 b.40.4.3 105448 2bgiA 272 8.35e+01 1ykdA 398 8.47e+01 1zhvA 134 8.52e+01 1fmjA 351 8.54e+01 c.37.1.5 59879 1vqqA 646 8.65e+01 1yjmA 110 8.70e+01 2f9dA 125 8.80e+01 1r7lA 110 9.00e+01 d.277.1.1 104837