Best Alignments for T0339

To select the top models, SAM generates pairwise alignments of the target sequence and the best-scoring templates. The alignments with the best E-values are presented here.

Warning: E-values smaller than about 0.001 may be overly optimistic.

A2M alignment AL alignment Template E-value Alignment cost FSSP rep SCOP Domain(s)
1t3iA/T0339-1t3iA-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m 1t3iA/T0339-1t3iA-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.al 1.3113e-379.83e-242 c.67.1.3
1v2dA/T0339-1v2dA-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m 1v2dA/T0339-1v2dA-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.al 5.1990e-237.60e-156 c.67.1.1
1wyuB/T0339-1wyuB-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m 1wyuB/T0339-1wyuB-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.al 2.5808e-201.47e-160
1yjsA/T0339-1yjsA-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m 1yjsA/T0339-1yjsA-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.al 2.7300e-194.13e-134
1kl1A/T0339-1kl1A-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m 1kl1A/T0339-1kl1A-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.al 4.3195e-191.17e-135 c.67.1.4
1vefA/T0339-1vefA-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m 1vefA/T0339-1vefA-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.al 9.0663e-185.38e-143
2bwnA/T0339-2bwnA-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m 2bwnA/T0339-2bwnA-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.al 1.9905e-171.32e-140
1pmmA/T0339-1pmmA-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m 1pmmA/T0339-1pmmA-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.al 3.3564e-175.81e-136 c.67.1.6
1wyuA/T0339-1wyuA-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m 1wyuA/T0339-1wyuA-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.al 3.7911e-171.64e-132
1yizA/T0339-1yizA-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m 1yizA/T0339-1yizA-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.al 1.3660e-161.59e-129

Please cite: Karplus, K. and Karchin, R. and Barrett, C. and Tu, S. and Cline, M. and Diekhans, M. and Grate, L. and Casper, J. and Hughey, R. ``What is the value added by human intervention in protein structure prediction?'' Proteins: Structure Function and Genetics 45(S5):86-91,2001