Best Alignments for T0339

To select the top models, SAM generates pairwise alignments of the target sequence and the best-scoring templates. The alignments with the best E-values are presented here.

Warning: E-values smaller than about 0.001 may be overly optimistic.

A2M alignment AL alignment Template E-value Alignment cost FSSP rep SCOP Domain(s)
1p3wA/T0339-1p3wA-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m 1p3wA/T0339-1p3wA-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.al 3.1131e-438.83e-238 c.67.1.3
1v2dA/T0339-1v2dA-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m 1v2dA/T0339-1v2dA-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.al 3.1084e-206.93e-120 c.67.1.1
1y4iA/T0339-1y4iA-t04-global-adpstyle1.a2m 1y4iA/T0339-1y4iA-t04-global-adpstyle1.al 7.2786e-204.26e-111
1wyuB/T0339-1wyuB-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m 1wyuB/T0339-1wyuB-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.al 4.9924e-181.78e-111
1mdoA/T0339-1mdoA-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m 1mdoA/T0339-1mdoA-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.al 9.9278e-174.00e-105 c.67.1.4
2ctzA/T0339-2ctzA-t04-global-adpstyle1.a2m 2ctzA/T0339-2ctzA-t04-global-adpstyle1.al 1.1077e-163.73e-96
1yjsA/T0339-1yjsA-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m 1yjsA/T0339-1yjsA-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.al 3.6002e-163.30e-99
1pmmA/T0339-1pmmA-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m 1pmmA/T0339-1pmmA-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.al 5.0007e-161.71e-104 c.67.1.6
1wyuA/T0339-1wyuA-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m 1wyuA/T0339-1wyuA-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.al 1.9379e-152.14e-108
2bwnA/T0339-2bwnA-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m 2bwnA/T0339-2bwnA-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.al 2.9707e-159.61e-106

Please cite: Karplus, K. and Karchin, R. and Barrett, C. and Tu, S. and Cline, M. and Diekhans, M. and Grate, L. and Casper, J. and Hughey, R. ``What is the value added by human intervention in protein structure prediction?'' Proteins: Structure Function and Genetics 45(S5):86-91,2001