Best Alignments for T0338

To select the top models, SAM generates pairwise alignments of the target sequence and the best-scoring templates. The alignments with the best E-values are presented here.

Warning: E-values smaller than about 0.001 may be overly optimistic.

A2M alignment AL alignment Template E-value Alignment cost FSSP rep SCOP Domain(s)
2cchB/T0338-2cchB-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m 2cchB/T0338-2cchB-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.al 1.5995e-367.36e-88
1w98B/T0338-1w98B-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m 1w98B/T0338-1w98B-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.al 4.3626e-305.65e-76
1f5qB/T0338-1f5qB-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m 1f5qB/T0338-1f5qB-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.al 2.9423e-202.08e-67 1f5qB a.74.1.1
a.74.1.1
1aisB/T0338-1aisB-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m 1aisB/T0338-1aisB-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.al 2.9667e-194.47e-64 1aisB a.74.1.2
a.74.1.2
1vin/T0338-1vin-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m 1vin/T0338-1vin-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.al 1.5308e-012.01e-85 1vin a.74.1.1
a.74.1.1
2g9xB/T0338-2g9xB-t06-global-adpstyle1.a2m 2g9xB/T0338-2g9xB-t06-global-adpstyle1.al 2.5636e-013.11e-71
2c5nB/T0338-2c5nB-t06-global-adpstyle1.a2m 2c5nB/T0338-2c5nB-t06-global-adpstyle1.al 2.7374e-013.11e-71
1jkw/T0338-1jkw-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m 1jkw/T0338-1jkw-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.al 1.1266e+001.03e-75 1jkw a.74.1.1
a.74.1.1
1bu2A/T0338-1bu2A-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m 1bu2A/T0338-1bu2A-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.al 2.8959e+001.73e-76 1bu2A a.74.1.1
a.74.1.1
1zp2A/T0338-1zp2A-t06-global-adpstyle1.a2m 1zp2A/T0338-1zp2A-t06-global-adpstyle1.al 3.7288e+001.81e-40

Please cite: Karplus, K. and Karchin, R. and Barrett, C. and Tu, S. and Cline, M. and Diekhans, M. and Grate, L. and Casper, J. and Hughey, R. ``What is the value added by human intervention in protein structure prediction?'' Proteins: Structure Function and Genetics 45(S5):86-91,2001