# List of top-scoring protein chains for t06-100-30-CB_burial_14_7-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # # FSSP representative for each protein chain taken from FSSP: # ------------------Citations (FSSP) ----------------------------------- # L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue FSSP-rep SCOP_domain SCOP_suid 5S 5N 12S 6S 12S 10N 2cchB 260 1.84e-27 1w98B 283 3.76e-23 1f5qB 252 1.19e-15 1f5qB a.74.1.1,a.74.1.1 18362,18363 1aisB 200 5.64e-14 1aisB a.74.1.2,a.74.1.2 18384,18385 2bsjA 133 8.39e-01 1lqaA 346 8.43e-01 c.1.7.1 84674 1ymiA 334 9.23e-01 1unlD 208 1.11e+00 1r29A 127 1.54e+00 d.42.1.1 96856 1guxB 152 1.57e+00 1guxB a.74.1.3 18389 1ynpA 317 1.58e+00 1j1vA 94 2.00e+00 a.4.12.2 83981 1gz8A 299 3.69e+00 d.144.1.7 83405 1b43A 340 3.83e+00 1a76 a.60.7.1,c.120.1.2 18092,33362 1r59O 505 3.96e+00 2aheA 267 4.10e+00 1o69A 394 4.28e+00 c.67.1.4 92560 2fq3A 104 5.44e+00 1wmaA 276 5.50e+00 1khbA 625 5.61e+00 c.91.1.1,c.109.1.1 68606,68607 2bhoA 130 5.82e+00 1i2sA 282 6.43e+00 e.3.1.1 71104 2gx9A 129 6.71e+00 2d0tA 406 7.44e+00 1nu7D 282 8.11e+00 a.8.6.1,a.8.6.1 92191,92192 1l5xA 280 8.30e+00 c.106.1.1 77718 1x8bA 289 8.49e+00 1g4iA 123 8.86e+00 1poa a.133.1.2 60241 2awiA 317 9.22e+00 1k4mA 213 9.25e+00 c.26.1.3 77258 1tn6A 382 1.01e+01 1khtA 192 1.11e+01 c.37.1.1 84401 1e5dA 402 1.12e+01 1e5dA c.23.5.1,d.157.1.3 31208,42061 1nkqA 259 1.15e+01 d.177.1.1 103862 1ztsA 139 1.30e+01 1oz9A 150 1.32e+01 d.92.1.15 93808 1s6bA 119 1.34e+01 a.133.1.2 98592 1jboB 172 1.48e+01 a.1.1.3 84151 1na3A 91 1.55e+01 k.38.1.1 85481 1gpeA 587 1.57e+01 1gpeA c.3.1.2,d.16.1.1 30387,37951 1or4A 178 1.59e+01 a.1.1.2 93447 1qhtA 775 1.64e+01 1tgoA c.55.3.5,e.8.1.1 33722,43011 1ae7 119 1.69e+01 1poa a.133.1.2 19553 2be4A 272 1.70e+01 1r8sE 203 1.72e+01 a.118.3.1 97248 1w2xA 758 1.77e+01 c.14.1.4,c.14.1.4 109134,109135 2arhA 203 1.77e+01 1bh9B 89 1.79e+01 1bh9B a.22.1.3 16485 1qlpA 394 1.81e+01 1ovaA e.1.1.1 42628 1ofcX 304 1.92e+01 a.4.1.3,a.4.1.13,a.187.1.1 92826,92827,92828 1g60A 260 1.92e+01 c.66.1.11 70151 1ufbA 127 2.11e+01 a.24.16.3 99331 1tkiA 321 2.12e+01 1tkiA d.144.1.7 41638 1v2zA 111 2.14e+01 a.186.1.1 108300 1u04A 771 2.17e+01 b.34.14.1,c.55.3.10 107539,107540 1z77A 200 2.31e+01 1x7yA 400 2.32e+01 1vkwA 218 2.32e+01 d.90.1.2 108695 1jtvA 327 2.35e+01 c.2.1.2 84230 1hn4A 131 2.48e+01 a.133.1.2 65893 2c5uA 375 2.52e+01 1vhnA 318 2.53e+01 c.1.4.1 100693 1r8mE 203 2.59e+01 a.118.3.1 97242 2fwuA 157 2.62e+01 1wz8A 264 2.70e+01 1j1bA 420 2.70e+01 d.144.1.7 90758 1o2dA 371 2.75e+01 e.22.1.2 86591 1kuuA 202 2.84e+01 d.153.2.1 73019 1rkbA 173 2.92e+01 2c2qA 199 2.93e+01 1w9gA 104 2.98e+01 1ctt 294 3.06e+01 1ctt c.97.1.1,c.97.1.1 36022,36023 2a2pA 129 3.22e+01 1el5A 389 3.24e+01 1b3mA c.3.1.2,d.16.1.3 30369,37937 1wiwA 290 3.28e+01 1ars 396 3.29e+01 1ajsA c.67.1.1 34287 1wa5C 960 3.31e+01 1m5wA 243 3.44e+01 c.1.24.1 84836 2c3nA 247 3.46e+01 2f5tX 233 3.51e+01 1xg7A 250 3.52e+01 1xppA 115 3.56e+01 1uqrA 154 3.60e+01 c.23.13.1 99779 1snyA 267 3.66e+01 c.2.1.2 105833 1uyrA 737 3.72e+01 c.14.1.4,c.14.1.4 100188,100189 1zbsA 291 3.73e+01 1j98A 157 3.74e+01 1j98A d.185.1.2 62755 1vzyA 291 3.76e+01 2abwA 227 3.77e+01 1wz9A 375 3.77e+01 1y13A 181 3.78e+01 1d3cA 686 3.81e+01 1cxlA b.1.18.2,b.3.1.1,b.71.1.1,c.1.8.1 21827,22496,27734,28721 1wleA 501 3.90e+01 1qqfA 277 3.96e+01 1c3d a.102.4.4 18875 2f5gA 133 3.99e+01 2g58A 121 4.19e+01 1xngA 268 4.19e+01 2f7tA 227 4.20e+01 1oeyJ 107 4.27e+01 d.15.2.2 92804 1sv0C 82 4.30e+01 a.60.1.1 106037 1ddf 127 4.43e+01 1ddf a.77.1.2 18423 1wzuA 300 4.45e+01 1kr4A 125 4.59e+01 d.58.5.2 72889 1xnfA 275 4.59e+01 1eyhA 144 4.60e+01 1eduA a.118.9.1 19214 1o4vA 183 4.71e+01 c.23.8.1 86628 1hssA 124 4.72e+01 1bea a.52.1.2 17819 1vi6A 208 4.72e+01 c.23.15.1 100736 1x88A 359 4.73e+01 2cw6A 298 4.86e+01 1mwmA 320 4.92e+01 c.55.1.1,c.55.1.1 79580,79581 1zrn 232 4.92e+01 1qq5A c.108.1.1 43323 1yxlA 119 4.97e+01 1srrA 124 5.03e+01 1dz3A c.23.1.1 31110 5csmA 256 5.09e+01 5csmA a.130.1.2 19494 1xjuA 163 5.09e+01 1s6bB 119 5.09e+01 a.133.1.2 98593 1ki9A 192 5.10e+01 c.37.1.1 84404 1rcwA 231 5.10e+01 a.132.1.4 97299 1ko6A 187 5.11e+01 b.119.1.1 77471 1dqeA 137 5.15e+01 1dqeA a.39.2.1 17388 1z8sA 146 5.19e+01 1otvA 259 5.25e+01 a.132.1.4 93526 1r3sA 367 5.32e+01 c.1.22.1 96963 1d2nA 272 5.34e+01 1d2nA c.37.1.20 32428 1atlA 202 5.47e+01 1atlA d.92.1.9 40322 1opjA 293 5.49e+01 d.144.1.7 87230 1g3mA 294 5.50e+01 c.37.1.5 83268 1mugA 168 5.53e+01 1mugA c.18.1.2 31030 1a3c 181 5.54e+01 1a3c c.61.1.1 34095 1dbhA 354 5.63e+01 1awe a.87.1.1,b.55.1.1 18514,26967 1t8kA 77 5.66e+01 a.28.1.1 106666 1oqcA 125 5.71e+01 a.24.15.1 87264 1ve1A 304 5.76e+01 1r5lA 262 5.86e+01 a.5.3.1,c.13.1.1 97099,97100 1jkeA 145 5.87e+01 c.110.1.1 66791 1t3qA 168 5.98e+01 a.56.1.1,d.15.4.2 106367,106368 1vfgA 390 6.06e+01 a.173.1.1,d.218.1.4 108570,108571 2cmuA 342 6.08e+01 1t6sA 162 6.24e+01 1whuA 104 6.25e+01 1zk7A 467 6.28e+01 1xkpC 143 6.29e+01 1vqoI 162 6.29e+01 1csn 298 6.35e+01 1csn d.144.1.7 41664 1qc7A 101 6.52e+01 1qc7A a.118.14.1 18456 1mngA 203 6.57e+01 1avmA a.2.11.1,d.44.1.1 15776,38701 1winA 143 6.57e+01 2d5cA 263 6.62e+01 1kb9D 246 6.67e+01 a.3.1.3,f.23.11.1 77317,77318 1ss9A 311 6.71e+01 c.68.1.4 105978 1xewX 182 6.75e+01 1vmeA 410 6.75e+01 c.23.5.1,d.157.1.3 108893,108894 1wjtA 103 6.82e+01 1gy8A 397 6.86e+01 c.2.1.2 83376 1cojA 212 6.89e+01 1avmA a.2.11.1,d.44.1.1 15737,38734 2bk9A 153 6.96e+01 1u6zA 513 7.01e+01 1je8A 82 7.08e+01 a.4.6.2 77108 1uu3A 310 7.09e+01 d.144.1.7 99999 1zt2B 212 7.13e+01 1h7sA 365 7.14e+01 d.14.1.3,d.122.1.2 65705,65706 1u1iA 392 7.21e+01 c.2.1.3,d.81.1.3 107582,107583 1f5vA 240 7.62e+01 1bkjA d.90.1.1 40255 1ayaA 101 7.63e+01 1qadA d.93.1.1 40460 1e8yA 966 7.65e+01 1e8xA a.118.1.6,b.7.1.1,d.15.1.5,d.144.1.4 19152,23187,37635,41715 2fe8A 315 7.67e+01 1m2dA 110 7.72e+01 c.47.1.11 78476 1om1A 332 7.74e+01 d.144.1.7 93347 1ga8A 311 7.75e+01 1ga8A c.68.1.4 34516 1z57A 339 7.77e+01 1orjA 130 8.01e+01 a.24.19.1 93456 1rtwA 220 8.09e+01 a.132.1.3 97823 1c3pA 375 8.16e+01 1c3pA c.42.1.2 32606 1c75A 71 8.35e+01 451c a.3.1.1 15796 1qh5A 260 8.38e+01 1qh5A d.157.1.2 42057 1w1oA 534 8.40e+01 d.58.32.4,d.145.1.1 109071,109072 2bfdA 400 8.40e+01 1h5oA 42 8.44e+01 g.9.1.2 83484 1vfjA 116 8.45e+01 1ukkA 142 8.53e+01 d.227.1.1 99491 1bw0A 416 8.54e+01 1bw0A c.67.1.1 34385 1cpcB 172 8.62e+01 1qgwC a.1.1.3 15644 1jigA 146 8.67e+01 a.25.1.1 71685 2f1kA 279 8.67e+01 1pcxA 810 8.67e+01 a.71.2.1,b.2.8.1,c.62.1.2,d.109.2.1,g.41.10.1 94497,94498,94499,94500,94501 1w68A 390 8.67e+01 a.25.1.2 109216 2ahqA 76 8.71e+01 1vk8A 106 8.77e+01 d.58.48.1 108636 1ka2A 499 8.79e+01 d.92.1.5 77305 1wwtA 88 8.87e+01 1vpt 348 8.94e+01 3mag c.66.1.25 34207