# List of top-scoring protein chains for T0338.t04-w0.5 hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # # FSSP representative for each protein chain taken from FSSP: # ------------------Citations (FSSP) ----------------------------------- # L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue FSSP-rep SCOP_domain SCOP_suid 5S 5N 12S 6S 12S 10N 2g9xB 262 2.25e-27 1vin 268 2.27e-27 1vin a.74.1.1,a.74.1.1 18354,18355 1h1rB 258 4.22e-27 a.74.1.1,a.74.1.1 76490,76491 1e9hB 261 4.23e-27 a.74.1.1,a.74.1.1 64813,64814 2c5nB 259 4.40e-27 1oiuB 260 4.52e-27 a.74.1.1,a.74.1.1 103959,103960 2cchB 260 4.66e-27 1vywB 265 6.50e-27 a.74.1.1,a.74.1.1 108923,108924 1w98B 283 2.40e-21 1jkw 323 6.36e-19 1jkw a.74.1.1,a.74.1.1 18356,18357 1kxu 333 6.58e-19 1jkw a.74.1.1,a.74.1.1 18358,18359 1zp2A 235 2.73e-15 1xo2A 254 8.06e-15 1bu2A 229 1.04e-14 1bu2A a.74.1.1,a.74.1.1 18360,18361 1c9bA 207 3.14e-14 1tfb a.74.1.2,a.74.1.2 18372,18373 1tfb 208 3.15e-14 1tfb a.74.1.2,a.74.1.2 18382,18383 1g3nC 257 6.54e-14 1bu2A a.74.1.1,a.74.1.1 18366,18367 1volA 204 9.75e-14 1tfb a.74.1.2,a.74.1.2 18370,18371 1d3uB 201 7.64e-13 1aisB a.74.1.2,a.74.1.2 18386,18387 1aisB 200 7.69e-13 1aisB a.74.1.2,a.74.1.2 18384,18385 1f5qB 252 3.10e-12 1f5qB a.74.1.1,a.74.1.1 18362,18363 2fwuA 157 1.48e+00 1nhyA 219 8.81e+00 a.45.1.1,c.47.1.5 80520,80521 1whnA 128 1.14e+01 1winA 143 1.40e+01 1g5hA 454 1.44e+01 1g5hA c.51.1.1,d.104.1.1 60270,60271 1zetA 388 1.46e+01 2alzA 390 1.50e+01 2avnA 260 1.53e+01 1sv0C 82 1.56e+01 a.60.1.1 106037 1pjkA 334 1.61e+01 d.144.1.7 88122 1na7A 329 1.64e+01 d.144.1.7 91752 1jwhA 337 1.64e+01 d.144.1.7 71913 1r29A 127 1.64e+01 d.42.1.1 96856 1ymiA 334 1.67e+01 1dl2A 511 1.71e+01 1dl2A a.102.2.1 18844 1e2sP 489 1.78e+01 1auk c.76.1.2 35031 1e3cP 489 1.83e+01 1auk c.76.1.2 59187 1e1zP 489 1.83e+01 1auk c.76.1.2 59158 1auk 489 1.87e+01 1auk c.76.1.2 35030 1e33P 489 2.04e+01 1auk c.76.1.2 59186 1zdtA 241 2.08e+01 2d2eA 250 2.16e+01 1z7dA 433 2.18e+01 2tbvA 387 2.30e+01 2tbvA b.121.4.7 23302 1ksoA 101 2.62e+01 a.39.1.2 72926 1ef8A 261 2.76e+01 1ef8A c.14.1.3 30921 1vk6A 269 2.83e+01 d.113.1.4,d.113.1.4 100851,100852 1h8fA 352 3.00e+01 d.144.1.7 65733 1h8fB 350 3.01e+01 d.144.1.7 65734 1uv5A 350 3.05e+01 d.144.1.7 100029 1o9uA 350 3.09e+01 d.144.1.7 92691 1s6cA 183 3.09e+01 a.39.1.5 98594 1oxnA 140 3.26e+01 g.52.1.1 93704 1gngA 378 3.34e+01 d.144.1.7 76239 1j34B 123 3.41e+01 d.169.1.1 84049 1tw6A 133 3.53e+01 1abbA 828 3.68e+01 1a8i c.87.1.4 35536 1ve1A 304 3.76e+01 1z7wA 322 3.77e+01 1z7yA 322 3.85e+01 1r0eA 391 3.94e+01 1tz7A 505 3.97e+01 1c50A 830 4.22e+01 1a8i c.87.1.4 35512 1rkd 309 4.57e+01 1rkd c.72.1.1 34928 1h5uA 842 4.57e+01 1a8i c.87.1.4 60655 1noj 842 4.57e+01 1a8i c.87.1.4 35479 1xc7A 842 4.57e+01 1unlA 292 4.59e+01 1xjjA 644 4.65e+01 1vmeA 410 4.89e+01 c.23.5.1,d.157.1.3 108893,108894 1yf6L 281 4.93e+01 1eysL 280 4.97e+01 6prcL f.26.1.1 43515 1jboB 172 5.25e+01 a.1.1.3 84151 1qorA 327 5.36e+01 1qorA b.35.1.2,c.2.1.1 24766,29782 1z8dA 842 5.41e+01 1ymtA 246 5.44e+01 1kmcC 119 5.48e+01 1yowA 242 5.54e+01 1i51E 117 5.78e+01 1urjA 1136 5.85e+01 1vqrA 297 6.18e+01 2bv7A 208 6.27e+01 1jfmA 174 6.27e+01 d.19.1.1 66640 1wbeA 209 6.37e+01 1w9cA 321 6.41e+01 1swxA 209 6.47e+01 a.224.1.1 106075 2plc 274 6.56e+01 2plc c.1.18.2 29614 1fnqL 281 6.67e+01 6prcL f.26.1.1 59918 1tfjA 219 6.71e+01 1r59O 505 6.76e+01 1kf6B 243 6.79e+01 a.1.2.1,d.15.4.2 72397,72398 1aod 289 6.82e+01 2plc c.1.18.2 29615 1rzhL 281 6.91e+01 f.26.1.1 98164 2evtA 209 6.93e+01 1qovL 281 6.95e+01 6prcL f.26.1.1 43455 1i4oC 141 7.02e+01 1klnA 605 7.17e+01 1xwl c.55.3.5,e.8.1.1 33693,42986 1f6nL 281 7.24e+01 6prcL f.26.1.1 59660 1q5kA 414 7.45e+01 d.144.1.7 104537 1pstL 266 7.53e+01 6prcL f.26.1.1 43503 1s1eA 224 7.54e+01 1fnpL 281 7.58e+01 6prcL f.26.1.1 59914 1g6iA 545 7.69e+01 a.102.2.1 83272 1ystL 273 7.71e+01 6prcL f.26.1.1 43509 1oedE 260 7.79e+01 f.36.1.1 86915 1lqaA 346 7.86e+01 c.1.7.1 84674 1i3oE 121 7.88e+01 1c9qA g.52.1.1 61605 1q41A 424 7.95e+01 d.144.1.7 95774 2a0sA 180 7.96e+01 1jh0L 281 7.97e+01 f.26.1.1 63036 1pyxA 422 7.99e+01 d.144.1.7 95383 1d8yA 605 8.00e+01 1xwl c.55.3.5,e.8.1.1 33684,42977 1j1bA 420 8.05e+01 d.144.1.7 90758 1k6nL 281 8.10e+01 f.26.1.1 72090 1qqfA 277 8.11e+01 1c3d a.102.4.4 18875 1oz7B 123 8.18e+01 d.169.1.1 93807 2et6A 604 8.31e+01 2fug2 181 8.34e+01 2bwrA 401 8.37e+01 1gefA 123 8.66e+01 1gefA c.52.1.18 60465 1kfd 605 8.88e+01 1xwl c.55.3.5,e.8.1.1 33694,42987 2kfnA 605 8.91e+01 1xwl c.55.3.5,e.8.1.1 33682,42975