# List of top-scoring protein chains for t06-100-30-CB_burial_14_7-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # # FSSP representative for each protein chain taken from FSSP: # ------------------Citations (FSSP) ----------------------------------- # L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue FSSP-rep SCOP_domain SCOP_suid 5S 5N 12S 6S 12S 10N 2bptA 861 3.58e-30 1ee4A 423 2.68e-02 1ee4A a.118.1.1 19128 1wa5B 530 9.26e-02 1n9eA 787 1.58e-01 b.30.2.1,d.17.2.1,d.17.2.1 91708,91709,91710 1upkA 341 2.27e-01 a.118.1.15 99758 1xqsA 280 3.13e-01 1xqrA 296 3.61e-01 1b3uA 588 4.50e-01 1b3uA a.118.1.2 19135 1bkpA 278 8.90e-01 1bkpA d.117.1.1 41029 1oyzA 280 1.32e+00 a.118.1.16 93775 1lqtA 456 1.97e+00 c.3.1.1,c.4.1.1 74198,74199 1sx7A 164 2.29e+00 1tuaA 191 3.17e+00 d.51.1.1,d.51.1.1 107321,107322 1obbA 480 3.18e+00 c.2.1.5,d.162.1.2 86760,86761 1r8eA 278 3.70e+00 a.6.1.3,d.60.1.1 104843,104844 1fpoA 171 4.17e+00 1fpoA a.2.3.1,a.23.1.1 15693,16487 2a5sA 284 4.26e+00 1eyhA 144 4.64e+00 1eduA a.118.9.1 19214 1go3F 107 4.91e+00 a.60.8.2 65407 1y0uA 96 5.11e+00 1n6zA 105 5.14e+00 d.263.1.1 85369 1gzsB 165 5.33e+00 a.168.1.1 76425 1w19A 160 5.75e+00 1vp2A 208 5.80e+00 1n5uA 585 5.96e+00 a.126.1.1,a.126.1.1,a.126.1.1 85339,85340,85341 2b1eA 564 6.00e+00 1pvgA 418 7.25e+00 d.14.1.3,d.122.1.2 95161,95162 1ux5A 411 7.33e+00 a.207.1.1 100144 1gqpA 221 7.33e+00 b.18.1.9 70372 1u9yA 284 7.49e+00 1o08A 221 8.21e+00 c.108.1.6 86525 1tn6A 382 9.12e+00 1n2aA 201 1.00e+01 a.45.1.1,c.47.1.5 91553,91554 1zupA 315 1.03e+01 4bcl 366 1.08e+01 4bcl b.75.1.1 27968 1a76 326 1.15e+01 1a76 a.60.7.1,c.120.1.2 18091,33361 1cv8 174 1.16e+01 1cv8 d.3.1.1 37089 1ei5A 520 1.19e+01 1ei5A b.61.3.1,b.61.3.1,e.3.1.1 27418,27419,42772 1k8kG 151 1.20e+01 a.118.13.1 68313 1zj8A 566 1.39e+01 2a4aA 281 1.49e+01 1pvdA 537 1.62e+01 1zpdA c.31.1.3,c.36.1.5,c.36.1.9 31737,31777,31778 1wycA 392 1.65e+01 1ouvA 273 1.66e+01 a.118.18.1 93570 1weqA 85 1.85e+01 1irdB 146 1.90e+01 a.1.1.2 66287 1dysA 348 1.99e+01 1bvwA c.6.1.1 30669 1pwgA 349 2.06e+01 e.3.1.1 104340 1dvpA 220 2.16e+01 1dvpA a.118.9.2,g.50.1.1 19216,45358 2c4wA 176 2.20e+01 1cb8A 678 2.23e+01 1cb8A a.102.3.2,b.24.1.1,b.30.5.2 18849,23898,24422 7ahlA 293 2.23e+01 7ahlA f.6.1.1 43812 1ykdA 398 2.28e+01 1mjnA 179 2.29e+01 c.62.1.1 79210 2d5xB 146 2.30e+01 1jdhA 529 2.34e+01 a.118.1.1 66549 1wa5C 960 2.44e+01 2a0b 125 2.46e+01 2a0b a.24.10.1 16630 1gw5A 621 2.51e+01 a.118.1.10 70629 1mvcA 240 2.52e+01 a.123.1.1 79499 1td6A 306 2.67e+01 2ex4A 241 2.75e+01 1e6bA 221 2.94e+01 1e6bA a.45.1.1,c.47.1.5 59294,59295 1r0pA 312 2.95e+01 d.144.1.7 96734 1fjrA 195 2.96e+01 1fjrA b.102.1.1 59855 1yqsA 349 3.05e+01 1xd3A 230 3.09e+01 1bbhA 131 3.09e+01 1bbhA a.24.3.2 16546 1odoA 408 3.10e+01 a.104.1.1 92783 1v2dA 381 3.12e+01 c.67.1.1 108281 2azjA 289 3.22e+01 1s1fA 406 3.29e+01 1pmi 440 3.31e+01 1pmi b.82.1.3 28114 2cygA 312 3.39e+01 1wdyA 285 3.42e+01 2gnxA 365 3.48e+01 1or4A 178 3.52e+01 a.1.1.2 93447 1qddA 144 3.65e+01 1qddA d.169.1.1 42324 1px5A 349 3.68e+01 a.160.1.2,d.218.1.6 95277,95278 1r03A 182 3.71e+01 a.25.1.1 104675 1ps1A 337 3.78e+01 1ps1A a.128.1.4 19450 2fywA 267 3.91e+01 2bf5A 98 4.02e+01 1eg3A 261 4.12e+01 1eg3A a.39.1.7,a.39.1.7,b.72.1.1 17376,17377,27805 1i2mA 216 4.17e+01 1byuA c.37.1.8 61568 2gdqA 382 4.17e+01 1x88A 359 4.36e+01 1w9cA 321 4.37e+01 1zc6A 305 4.45e+01 2fmlA 273 4.53e+01 2bs3A 656 4.57e+01 1f9vA 347 4.57e+01 1bg2 c.37.1.9 59745 1q3eA 207 4.81e+01 b.82.3.2 95669 1qwtA 255 4.82e+01 b.26.1.3 96501 1v54E 109 4.97e+01 a.118.11.1 100326 1myt 146 4.97e+01 1a6m a.1.1.2 15207 1g0cA 364 4.99e+01 7a3hA c.1.8.3 60165 1lc0A 294 5.40e+01 c.2.1.3,d.81.1.4 73823,73824 1u2zA 433 5.42e+01 c.66.1.31 107626 1z5hA 780 5.45e+01 1zl0A 311 5.49e+01 2aexA 346 5.51e+01 1guxA 218 5.62e+01 1guxA a.74.1.3 18388 1ry6A 360 5.63e+01 c.37.1.9 98090 1kxpD 458 5.69e+01 a.126.1.1,a.126.1.1,a.126.1.1 73160,73161,73162 2fd5A 180 5.97e+01 1mkiA 330 6.23e+01 e.3.1.2 84994 1jc4A 148 6.31e+01 1jc4A d.32.1.4 62863 1nbuA 119 6.43e+01 d.96.1.3 91767 1vkeA 133 6.51e+01 a.152.1.2 108650 2gdm 153 6.56e+01 2gdm a.1.1.2 15212 2apoA 357 6.58e+01 1e5dA 402 6.67e+01 1e5dA c.23.5.1,d.157.1.3 31208,42061 1a6m 151 6.86e+01 1a6m a.1.1.2 15018 1uuzA 137 6.89e+01 d.233.1.1 100024 1u5kA 244 6.93e+01 2czlA 272 6.93e+01 1k7kA 221 7.01e+01 c.51.4.1 72104 2sqcA 631 7.15e+01 2sqcA a.102.4.2,a.102.4.2 18854,18855 1ti6B 274 7.31e+01 b.3.5.1,d.58.1.5 106976,106977 1ww8A 439 7.31e+01 1dekA 241 7.32e+01 1dekA c.37.1.1 31842 1qwnA 1045 7.37e+01 a.8.3.1,b.30.5.6,c.6.2.1 96487,96488,96489 1u7iA 136 7.46e+01 d.32.1.7 107724 1qtqA 553 7.53e+01 1gtrA b.53.1.2,c.26.1.1 26940,31579 1gteA 1025 7.54e+01 a.1.2.2,c.1.4.1,c.3.1.1,c.4.1.1,d.58.1.5 70440,70441,70442,70443,70444 1sqgA 429 7.59e+01 a.79.1.3,c.66.1.38 105912,105913 1rxwA 336 7.66e+01 a.60.7.1,c.120.1.2 98059,98060 1u8xX 472 7.69e+01 c.2.1.5,d.162.1.2 107741,107742 1yksA 440 7.72e+01 1a53 247 7.73e+01 1a53 c.1.2.4 28564 1xfrA 128 7.75e+01 2freA 200 7.79e+01 1h0pA 182 7.81e+01 b.62.1.1 76450 1vg0A 650 7.83e+01 c.3.1.3,d.16.1.6 108596,108597 1sglA 209 7.85e+01 d.124.1.1 105536 1reqB 637 7.94e+01 1reqB c.1.19.1,c.23.6.1 29621,31248 1j1jA 240 8.04e+01 a.118.16.1 90762 2as9A 210 8.07e+01 1vjgA 218 8.13e+01 c.23.10.6 100810 1n40A 396 8.25e+01 a.104.1.1 79977 1ne9A 335 8.34e+01 d.108.1.4,d.108.1.4 91839,91840 1xm9A 457 8.52e+01 1vrmA 325 8.53e+01 1iz5A 249 8.53e+01 d.131.1.2,d.131.1.2 83834,83835 1dvoA 152 8.61e+01 1dvoA a.136.1.1 19623 1zo0A 126 8.72e+01 1hu3A 260 8.81e+01 1hu3A a.118.1.14 19137 1y0zA 330 8.95e+01