Best Alignments for T0336

To select the top models, SAM generates pairwise alignments of the target sequence and the best-scoring templates. The alignments with the best E-values are presented here.

Warning: E-values smaller than about 0.001 may be overly optimistic.

A2M alignment AL alignment Template E-value Alignment cost FSSP rep SCOP Domain(s)
1qgrA/T0336-1qgrA-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m 1qgrA/T0336-1qgrA-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.al 5.5203e-204.91e-58 1qgrA a.118.1.1
2bptA/T0336-2bptA-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m 2bptA/T0336-2bptA-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.al 6.1862e-182.57e-64
1qbkB/T0336-1qbkB-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m 1qbkB/T0336-1qbkB-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.al 5.7663e-111.25e-21 1qbkB a.118.1.1
1ee4A/T0336-1ee4A-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m 1ee4A/T0336-1ee4A-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.al 6.0864e-072.59e-21 1ee4A a.118.1.1
1ialA/T0336-1ialA-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m 1ialA/T0336-1ialA-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.al 1.1500e-061.71e-20 1bk5A a.118.1.1
1b3uA/T0336-1b3uA-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m 1b3uA/T0336-1b3uA-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.al 3.6739e-041.70e-12 1b3uA a.118.1.2
1wa5B/T0336-1wa5B-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m 1wa5B/T0336-1wa5B-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.al 3.6806e-041.52e-18
1oyzA/T0336-1oyzA-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m 1oyzA/T0336-1oyzA-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.al 1.3230e-033.43e-10 a.118.1.16
1xqrA/T0336-1xqrA-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m 1xqrA/T0336-1xqrA-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.al 4.1538e-031.90e-15
1xqsA/T0336-1xqsA-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m 1xqsA/T0336-1xqsA-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.al 4.4954e-031.97e-12

Please cite: Karplus, K. and Karchin, R. and Barrett, C. and Tu, S. and Cline, M. and Diekhans, M. and Grate, L. and Casper, J. and Hughey, R. ``What is the value added by human intervention in protein structure prediction?'' Proteins: Structure Function and Genetics 45(S5):86-91,2001