# List of top-scoring protein chains for t04-100-30-near-backbone-11-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # # FSSP representative for each protein chain taken from FSSP: # ------------------Citations (FSSP) ----------------------------------- # L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue FSSP-rep SCOP_domain SCOP_suid 5S 5N 12S 6S 12S 10N 1qgrA 876 2.31e-27 1qgrA a.118.1.1 19119 2bptA 861 7.68e-24 1ibrB 462 2.46e-20 1qgrA a.118.1.1 19120 1qbkB 890 1.38e-16 1qbkB a.118.1.1 19127 1ee4A 423 3.22e-07 1ee4A a.118.1.1 19128 1wa5B 530 2.06e-06 1xqrA 296 1.06e-02 1b3uA 588 1.23e-02 1b3uA a.118.1.2 19135 1xqsA 280 1.76e-02 1oyzA 280 1.91e-02 a.118.1.16 93775 1gw5A 621 2.89e-02 a.118.1.10 70629 1jdhA 529 6.06e-01 a.118.1.1 66549 1upkA 341 9.27e-01 a.118.1.15 99758 1i7wA 538 1.18e+00 3bct a.118.1.1 61909 1e5dA 402 1.47e+00 1e5dA c.23.5.1,d.157.1.3 31208,42061 1w33A 181 1.48e+00 1azwA 313 1.60e+00 1qtrA c.69.1.7 34658 1wosA 364 1.62e+00 b.44.2.1,d.250.1.1 109468,109469 1gv3A 248 1.63e+00 a.2.11.1,d.44.1.1 70585,70586 1lqtA 456 1.77e+00 c.3.1.1,c.4.1.1 74198,74199 1dbtA 239 2.17e+00 1dbtA c.1.2.3 28539 1eyhA 144 2.50e+00 1eduA a.118.9.1 19214 1k7kA 221 2.64e+00 c.51.4.1 72104 1z5hA 780 2.76e+00 1t98A 287 3.05e+00 1qsaA 618 3.35e+00 1qsaA a.118.5.1,d.2.1.6 19182,36988 1d2nA 272 3.52e+00 1d2nA c.37.1.20 32428 1p5hA 428 3.93e+00 c.123.1.1 87802 1v9dA 340 5.23e+00 a.207.1.1 100535 1j7dA 145 5.55e+00 1jatB d.20.1.1 62680 1xm9A 457 5.64e+00 7a3hA 303 6.01e+00 7a3hA c.1.8.3 28817 1qqeA 292 6.19e+00 1qqeA a.118.8.1 19210 1sly 618 6.44e+00 1qsaA a.118.5.1,d.2.1.6 19184,36990 1nsf 273 6.68e+00 1d2nA c.37.1.20 32429 2gx9A 129 6.95e+00 2ac3A 316 7.01e+00 1cb8A 678 7.13e+00 1cb8A a.102.3.2,b.24.1.1,b.30.5.2 18849,23898,24422 1lrv 244 7.35e+00 1lrv a.118.1.5 19146 1z0xA 220 7.61e+00 2ac5A 316 7.76e+00 1wdyA 285 8.08e+00 1rtwA 220 8.13e+00 a.132.1.3 97823 2a19B 284 8.39e+00 1eg5A 384 8.48e+00 1ecxA c.67.1.3 34429 2a61A 145 8.72e+00 1w9cA 321 9.11e+00 2etvA 346 9.40e+00 1vrmA 325 1.01e+01 2a4dA 160 1.05e+01 1wbeA 209 1.06e+01 1m1zA 513 1.07e+01 c.26.2.1,d.153.1.1 78457,78458 1rt8A 513 1.15e+01 a.40.1.1 105095 1vhnA 318 1.18e+01 c.1.4.1 100693 1h7eA 245 1.20e+01 c.68.1.13 60717 2freA 200 1.21e+01 2aexA 346 1.25e+01 1vp2A 208 1.28e+01 1zwwA 256 1.38e+01 1a0fA 201 1.42e+01 1a0fA a.45.1.1,c.47.1.5 17737,33031 1u9yA 284 1.47e+01 1j0hA 588 1.49e+01 b.1.18.2,b.71.1.1,c.1.8.1 77027,77028,77029 1ciy 590 1.57e+01 1ciy b.18.1.3,b.77.2.1,f.1.3.1 23720,27977,43392 2gfoA 396 1.63e+01 1tfjA 219 1.66e+01 1p3wA 404 1.69e+01 c.67.1.3 87752 1ywfA 296 1.83e+01 1icpA 376 1.84e+01 1oyc c.1.4.1 62270 9gafA 295 1.91e+01 1apyA d.153.1.5 42008 2fbiA 142 1.92e+01 2arcA 164 1.97e+01 2arcA b.82.4.1 28148 1p4kA 295 2.01e+01 d.153.1.5 87772 1b5eA 246 2.04e+01 1b5eA d.117.1.1 41056 2ethA 154 2.08e+01 1ps1A 337 2.10e+01 1ps1A a.128.1.4 19450 1rxwA 336 2.13e+01 a.60.7.1,c.120.1.2 98059,98060 1s1eA 224 2.17e+01 1rvkA 382 2.17e+01 c.1.11.2,d.54.1.1 97928,97929 1y6iA 233 2.20e+01 2fiyA 309 2.34e+01 1f5nA 592 2.35e+01 1dg3A a.114.1.1,c.37.1.8 19077,32152 1u7iA 136 2.37e+01 d.32.1.7 107724 3pmgA 561 2.50e+01 3pmgA c.84.1.1,c.84.1.1,c.84.1.1,d.129.2.1 35408,35409,35410,41301 2c4jA 218 2.57e+01 1n2aA 201 2.65e+01 a.45.1.1,c.47.1.5 91553,91554 1ej2A 181 2.65e+01 1f9aA c.26.1.3 59414 1ei5A 520 2.70e+01 1ei5A b.61.3.1,b.61.3.1,e.3.1.1 27418,27419,42772 1swxA 209 2.74e+01 a.224.1.1 106075 1x6mA 196 2.76e+01 1j9yA 385 2.78e+01 1j9yA c.1.8.3 62791 1cv8 174 2.94e+01 1cv8 d.3.1.1 37089 1r6fA 310 2.95e+01 e.46.1.1 97149 2eueA 279 2.96e+01 2bkkA 264 2.97e+01 1oe8A 211 2.99e+01 a.45.1.1,c.47.1.5 86905,86906 1yqyA 523 3.03e+01 1wa5C 960 3.14e+01 1xsvA 113 3.18e+01 1dgfA 497 3.18e+01 1cf9A e.5.1.1 42782 1jbbA 153 3.18e+01 1u9aA d.20.1.1 62842 1z5bA 469 3.21e+01 1dz4A 414 3.24e+01 1phd a.104.1.1 18903 1z3xA 238 3.26e+01 1qgtA 149 3.27e+01 1qgtA a.62.1.1 18135 1u6zA 513 3.31e+01 2bodX 286 3.32e+01 1vc1A 110 3.35e+01 c.13.2.1 108493 1bkpA 278 3.35e+01 1bkpA d.117.1.1 41029 2cw5A 255 3.40e+01 1cg5A 141 3.41e+01 1abwA a.1.1.2 15406 1r0pA 312 3.42e+01 d.144.1.7 96734 2sqcA 631 3.48e+01 2sqcA a.102.4.2,a.102.4.2 18854,18855 1g8pA 350 3.51e+01 1g8pA c.37.1.20 60376 2c31A 568 3.51e+01 1spgA 144 3.56e+01 1abwA a.1.1.2 15409 1eny 268 3.57e+01 1eny c.2.1.2 29910 1m8jA 181 3.59e+01 c.26.1.3 84875 1dekA 241 3.62e+01 1dekA c.37.1.1 31842 1bzpA 153 3.64e+01 1a6m a.1.1.2 15020 1hrhA 136 3.65e+01 1rthA c.55.3.1 33577 1v8dA 235 3.65e+01 c.140.1.1 108425 2fk8A 318 3.66e+01 1oaoC 729 3.69e+01 e.26.1.3 86746 1tuaA 191 3.70e+01 d.51.1.1,d.51.1.1 107321,107322 1jatA 155 3.71e+01 1u9aA d.20.1.1 62818 2bogX 286 3.87e+01 1xw5A 217 3.90e+01 1vqsA 116 3.96e+01 2aq8A 269 4.09e+01 1dvpA 220 4.11e+01 1dvpA a.118.9.2,g.50.1.1 19216,45358 1a6m 151 4.16e+01 1a6m a.1.1.2 15018 1szhA 161 4.30e+01 a.226.1.1 106157 3il8 72 4.38e+01 1tvxA d.9.1.1 37356 1dqeA 137 4.40e+01 1dqeA a.39.2.1 17388 1mg4A 113 4.56e+01 d.15.11.1 84953 1h0pA 182 4.59e+01 b.62.1.1 76450 2b81A 323 4.62e+01 2f4iA 197 4.66e+01 1jksA 294 4.70e+01 d.144.1.7 71710 2bikB 313 4.70e+01 1h8eG 272 4.71e+01 1e79G c.49.2.1 60756 2cvbA 188 4.74e+01 1nnwA 252 4.76e+01 d.159.1.5 80674 1ow4A 129 4.79e+01 a.39.2.1 93628 1xo7A 166 4.80e+01 1vjgA 218 4.85e+01 c.23.10.6 100810 2g3bA 208 4.91e+01 2f06A 144 4.99e+01 1e6bA 221 5.00e+01 1e6bA a.45.1.1,c.47.1.5 59294,59295 1w19A 160 5.00e+01 1mtzA 293 5.03e+01 c.69.1.7 79467 2au3A 407 5.05e+01 1xqwA 293 5.06e+01 1vavA 222 5.07e+01 b.29.1.18 108472 1j2aA 166 5.10e+01 b.62.1.1 90779 2b69A 343 5.12e+01 2ccjA 205 5.17e+01 2bdwA 362 5.20e+01 1quuA 250 5.23e+01 1quuA a.7.1.1,a.7.1.1 16320,16321 1z77A 200 5.24e+01 2fl7A 232 5.25e+01 1g0cA 364 5.31e+01 7a3hA c.1.8.3 60165 1h7wA 1025 5.35e+01 1h7wA a.1.2.2,c.1.4.1,c.3.1.1,c.4.1.1,d.58.1.5 15683,28628,30324,30609,39007 1pvtA 238 5.44e+01 c.74.1.1 95189 1zthA 258 5.48e+01 1s1fA 406 5.50e+01 1mym 154 5.54e+01 1a6m a.1.1.2 15054 1eu8A 409 5.55e+01 1eu8A c.94.1.1 59502 1yrcA 414 5.59e+01 1xfrA 128 5.68e+01 1aisB 200 5.79e+01 1aisB a.74.1.2,a.74.1.2 18384,18385 1jjfA 268 5.80e+01 c.69.1.2 66765 1gd8A 118 6.00e+01 d.188.1.1 60445 1dwtA 153 6.10e+01 1a6m a.1.1.2 15190 1rvaA 244 6.44e+01 1rvaA c.52.1.2 33240 1nffA 260 6.53e+01 c.2.1.2 80457 1jf9A 408 6.66e+01 1c0nA c.67.1.3 62931 1tc1A 220 6.68e+01 1tc1A c.61.1.1 34083 1tml 286 6.71e+01 1tml c.6.1.1 30656 1bbhA 131 6.74e+01 1bbhA a.24.3.2 16546 103m 154 6.79e+01 1a6m a.1.1.2 15124 1zcbA 362 6.87e+01 1qisA 396 6.90e+01 1ajsA c.67.1.1 34284 1mu5A 471 6.92e+01 a.156.1.3,d.14.1.3,d.122.1.2 79472,79473,79474 1xwsA 313 6.94e+01 1irdB 146 7.02e+01 a.1.1.2 66287 1rcwA 231 7.03e+01 a.132.1.4 97299 1bo4A 168 7.06e+01 1bo4A d.108.1.1 40798 2fuqA 747 7.06e+01 2awiA 317 7.10e+01 1ib2A 349 7.15e+01 1ib2A a.118.1.8 62141 1tu7A 208 7.16e+01 1ac5 483 7.24e+01 1ac5 c.69.1.5 34653 1hw1A 239 7.27e+01 1e2xA a.4.5.6,a.78.1.1 16111,18441 1re9A 414 7.29e+01 1q9jA 422 7.35e+01 c.43.1.2,c.43.1.2 104590,104591 2frfA 153 7.48e+01 1owxA 121 7.62e+01 d.58.7.1 87494 1yhvA 297 7.65e+01 1qwgA 251 7.65e+01 c.1.27.1 96473 1wu4A 396 7.69e+01 1vljA 407 7.71e+01 e.22.1.2 108832 1t4aA 84 7.83e+01 d.284.1.1 106404 1rcd 173 7.95e+01 2fha a.25.1.1 16687 1yg9A 330 7.96e+01 2mgg 154 7.98e+01 1a6m a.1.1.2 15069 1mlo 154 7.99e+01 1a6m a.1.1.2 15085 1gteA 1025 8.06e+01 a.1.2.2,c.1.4.1,c.3.1.1,c.4.1.1,d.58.1.5 70440,70441,70442,70443,70444 1i88A 389 8.17e+01 c.95.1.2,c.95.1.2 66070,66071 1l7vA 326 8.19e+01 f.22.1.1 73672 2bbhA 269 8.22e+01 1urnA 97 8.23e+01 1urnA d.58.7.1 39153 1yp1A 202 8.25e+01 1xxlA 239 8.30e+01 1h2vC 771 8.36e+01 a.118.1.14,a.118.1.14,a.118.1.14 76592,76593,76594 1bi5A 389 8.40e+01 1bi5A c.95.1.2,c.95.1.2 35985,35986 1k8kA 418 8.45e+01 c.55.1.1,c.55.1.1 68305,68306 1vk9A 151 8.47e+01 c.139.1.1 108640 1yvrA 538 8.50e+01 1zq4A 693 8.50e+01 2pth 193 8.53e+01 2pth c.56.3.1 33793 1sqeA 109 8.56e+01 d.58.4.5 105908 1mlg 154 8.59e+01 1a6m a.1.1.2 15104 1x0rA 249 8.62e+01 1ahxA 396 8.66e+01 1ajsA c.67.1.1 34293 1kfwA 435 8.67e+01 c.1.8.5,d.26.3.1 77376,77377 1gjnA 153 8.67e+01 a.1.1.2 70191 1o26A 232 8.79e+01 d.207.1.1 86566 1oj4A 283 8.80e+01 d.14.1.5,d.58.26.5 93083,93084 1bg6 359 8.92e+01 1bg6 a.100.1.5,c.2.1.6 18810,30214