Best Alignments for T0335

To select the top models, SAM generates pairwise alignments of the target sequence and the best-scoring templates. The alignments with the best E-values are presented here.

Warning: E-values smaller than about 0.001 may be overly optimistic.

A2M alignment AL alignment Template E-value Alignment cost FSSP rep SCOP Domain(s)
1t3wA/T0335-1t3wA-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m 1t3wA/T0335-1t3wA-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.al 2.3554e+001.25e-03
1b5sA/T0335-1b5sA-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m 1b5sA/T0335-1b5sA-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.al 2.3889e+002.38e-02 1eaf c.43.1.1
1il1A/1igtB-T0335-fssp-local-adpstyle5.a2m 1il1A/1igtB-T0335-fssp-local-adpstyle5.al 3.3024e+003.51e+03 1igtB b.1.1.1
b.1.1.2
1qokA/1f3rB-T0335-fssp-local-adpstyle5.a2m 1qokA/1f3rB-T0335-fssp-local-adpstyle5.al 3.3703e+005.53e+03 1f3rB b.1.1.1
b.1.1.1
1y96B/T0335-1y96B-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m 1y96B/T0335-1y96B-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.al 3.3897e+001.30e+00
1f47B/T0335-1f47B-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m 1f47B/T0335-1f47B-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.al 3.8189e+001.37e-06 1f46A d.129.4.1
1t95A/T0335-1t95A-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m 1t95A/T0335-1t95A-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.al 3.9017e+004.47e-14 a.5.8.1
d.235.1.2
d.58.11.3
1xhdA/T0335-1xhdA-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m 1xhdA/T0335-1xhdA-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.al 4.1792e+004.51e-06
2fzfA/T0335-2fzfA-t06-global-adpstyle1.a2m 2fzfA/T0335-2fzfA-t06-global-adpstyle1.al 4.3944e+008.47e-01
2aexA/T0335-2aexA-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m 2aexA/T0335-2aexA-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.al 4.6013e+001.25e-02

Please cite: Karplus, K. and Karchin, R. and Barrett, C. and Tu, S. and Cline, M. and Diekhans, M. and Grate, L. and Casper, J. and Hughey, R. ``What is the value added by human intervention in protein structure prediction?'' Proteins: Structure Function and Genetics 45(S5):86-91,2001