# TARGET T0335 # Using neural net t2k-5651-IDaaHr-5-15-7-15-9-15-13-str2-from-empty.net # This is a 4-layer network, with # window units # 5 15 # 7 15 # 9 15 # 13 13 (1 str2 ) # The input amino acid frequencies were determined from # alignment T0335.t2k-thin90.a2m.gz # with weighted counts, using HenikoffWeight(-1 bits/column, 1) # Counts were regularized to probabilities using # /projects/compbio/lib/recode3.20comp # Total sequence weight for alignment was 53 # Pos AA A B C E G H M P Q S T Y Z 10N 1S 5N 5N 5N 5N 5N 5N 5N 5N 5N 5N 5N 5N 5N 1 M 0.001 0.005 0.838 0.001 0.005 0.056 0.001 0.001 0.003 0.060 0.014 0.011 0.008 2 I 0.001 0.029 0.846 0.001 0.004 0.068 0.001 0.001 0.005 0.022 0.011 0.002 0.013 3 S 0.001 0.014 0.402 0.001 0.006 0.421 0.001 0.001 0.004 0.126 0.021 0.002 0.005 4 N 0.001 0.001 0.008 0.001 0.008 0.964 0.001 0.001 0.001 0.007 0.013 0.001 0.001 5 A 0.001 0.001 0.009 0.001 0.006 0.974 0.001 0.001 0.001 0.003 0.007 0.001 0.001 6 K 0.001 0.001 0.003 0.001 0.002 0.990 0.001 0.001 0.001 0.001 0.003 0.001 0.001 7 I 0.001 0.001 0.001 0.001 0.001 0.995 0.001 0.001 0.001 0.001 0.001 0.001 0.001 8 A 0.001 0.001 0.001 0.001 0.001 0.994 0.001 0.001 0.001 0.001 0.003 0.001 0.001 9 R 0.001 0.001 0.001 0.001 0.001 0.990 0.001 0.001 0.001 0.001 0.007 0.001 0.001 10 I 0.001 0.001 0.003 0.001 0.001 0.990 0.001 0.001 0.001 0.001 0.004 0.001 0.001 11 N 0.001 0.001 0.003 0.001 0.001 0.988 0.001 0.001 0.001 0.003 0.005 0.001 0.001 12 E 0.001 0.001 0.001 0.001 0.001 0.991 0.001 0.001 0.001 0.001 0.006 0.001 0.001 13 L 0.001 0.001 0.001 0.001 0.001 0.991 0.001 0.001 0.001 0.001 0.006 0.001 0.001 14 A 0.001 0.001 0.002 0.001 0.001 0.988 0.001 0.001 0.001 0.001 0.008 0.001 0.001 15 A 0.001 0.001 0.002 0.001 0.001 0.981 0.001 0.001 0.001 0.002 0.014 0.001 0.001 16 K 0.001 0.001 0.004 0.001 0.002 0.978 0.001 0.001 0.001 0.003 0.012 0.001 0.001 17 A 0.001 0.001 0.003 0.001 0.004 0.960 0.001 0.001 0.001 0.003 0.029 0.001 0.001 18 K 0.001 0.001 0.026 0.001 0.020 0.845 0.001 0.001 0.001 0.015 0.090 0.001 0.001 19 A 0.001 0.005 0.049 0.001 0.041 0.677 0.001 0.001 0.001 0.042 0.181 0.001 0.003 20 G 0.001 0.002 0.104 0.001 0.019 0.335 0.001 0.001 0.001 0.284 0.249 0.002 0.003 21 V 0.001 0.006 0.300 0.001 0.009 0.091 0.001 0.001 0.001 0.193 0.393 0.002 0.003 22 I 0.001 0.008 0.914 0.001 0.001 0.011 0.001 0.001 0.001 0.056 0.007 0.001 0.002 23 T 0.001 0.002 0.982 0.001 0.001 0.004 0.001 0.001 0.001 0.011 0.001 0.001 0.001 24 E 0.001 0.001 0.024 0.001 0.024 0.893 0.001 0.001 0.001 0.017 0.042 0.001 0.001 25 E 0.001 0.001 0.025 0.001 0.019 0.914 0.001 0.001 0.001 0.010 0.032 0.001 0.001 26 E 0.001 0.001 0.016 0.001 0.015 0.957 0.001 0.001 0.001 0.005 0.007 0.001 0.001 27 K 0.001 0.001 0.015 0.001 0.005 0.965 0.001 0.001 0.001 0.005 0.009 0.001 0.001 28 A 0.001 0.001 0.010 0.001 0.006 0.962 0.001 0.001 0.001 0.003 0.017 0.001 0.001 29 E 0.001 0.001 0.006 0.001 0.003 0.975 0.001 0.001 0.001 0.002 0.013 0.001 0.001 30 Q 0.001 0.001 0.011 0.001 0.001 0.977 0.001 0.001 0.001 0.005 0.005 0.001 0.001 31 Q 0.001 0.001 0.002 0.001 0.001 0.989 0.001 0.001 0.001 0.003 0.003 0.001 0.001 32 K 0.001 0.001 0.001 0.001 0.001 0.995 0.001 0.001 0.001 0.001 0.003 0.001 0.001 33 L 0.001 0.001 0.001 0.001 0.001 0.996 0.001 0.001 0.001 0.001 0.002 0.001 0.001 34 R 0.001 0.001 0.001 0.001 0.001 0.997 0.001 0.001 0.001 0.001 0.001 0.001 0.001 35 Q 0.001 0.001 0.001 0.001 0.001 0.997 0.001 0.001 0.001 0.001 0.002 0.001 0.001 36 E 0.001 0.001 0.001 0.001 0.001 0.996 0.001 0.001 0.001 0.001 0.004 0.001 0.001 37 Y 0.001 0.001 0.001 0.001 0.001 0.991 0.001 0.001 0.001 0.001 0.007 0.001 0.001 38 L 0.001 0.001 0.005 0.001 0.001 0.981 0.001 0.001 0.001 0.001 0.012 0.001 0.001 39 K 0.001 0.001 0.002 0.001 0.001 0.966 0.001 0.001 0.001 0.005 0.026 0.001 0.001 40 G 0.001 0.001 0.008 0.001 0.002 0.912 0.001 0.001 0.001 0.009 0.069 0.001 0.001 41 F 0.001 0.001 0.028 0.001 0.003 0.909 0.001 0.001 0.001 0.018 0.041 0.001 0.001 42 R 0.001 0.001 0.018 0.001 0.006 0.949 0.001 0.001 0.001 0.003 0.022 0.001 0.001 43 S 0.001 0.001 0.004 0.001 0.006 0.950 0.001 0.001 0.001 0.006 0.034 0.001 0.001 44 S 0.001 0.001 0.004 0.001 0.004 0.945 0.001 0.001 0.001 0.004 0.043 0.001 0.001 45 M 0.001 0.001 0.009 0.001 0.003 0.965 0.001 0.001 0.001 0.007 0.014 0.001 0.001 46 K 0.001 0.001 0.015 0.001 0.013 0.943 0.001 0.001 0.001 0.005 0.023 0.001 0.001 47 N 0.001 0.001 0.012 0.001 0.039 0.857 0.001 0.001 0.001 0.010 0.078 0.001 0.001 48 T 0.001 0.004 0.028 0.001 0.068 0.752 0.001 0.002 0.001 0.023 0.117 0.001 0.003 49 L 0.001 0.009 0.066 0.001 0.088 0.589 0.001 0.003 0.004 0.054 0.171 0.002 0.012 50 K 0.001 0.005 0.059 0.026 0.088 0.137 0.001 0.001 0.002 0.121 0.546 0.010 0.004 51 S 0.001 0.002 0.129 0.029 0.059 0.030 0.001 0.001 0.011 0.121 0.597 0.003 0.017 52 V 0.004 0.003 0.601 0.015 0.008 0.007 0.001 0.001 0.013 0.227 0.039 0.036 0.045 53 K 0.035 0.014 0.344 0.012 0.002 0.002 0.032 0.003 0.115 0.028 0.006 0.163 0.243 54 I 0.121 0.019 0.094 0.002 0.002 0.002 0.094 0.025 0.119 0.007 0.002 0.222 0.291 55 I 0.189 0.109 0.095 0.031 0.001 0.003 0.109 0.023 0.086 0.007 0.001 0.079 0.265 56 D 0.008 0.018 0.505 0.001 0.002 0.003 0.007 0.001 0.052 0.023 0.005 0.050 0.326 57 P 0.001 0.001 0.012 0.002 0.020 0.015 0.001 0.001 0.001 0.055 0.895 0.001 0.001 58 E 0.001 0.001 0.009 0.001 0.023 0.007 0.001 0.001 0.001 0.076 0.883 0.001 0.001 59 G 0.001 0.004 0.126 0.001 0.047 0.007 0.001 0.001 0.001 0.427 0.379 0.002 0.006 60 N 0.001 0.016 0.428 0.003 0.020 0.004 0.001 0.001 0.002 0.158 0.353 0.003 0.013 61 D 0.011 0.215 0.355 0.005 0.009 0.003 0.005 0.001 0.007 0.150 0.030 0.027 0.182 62 V 0.005 0.194 0.439 0.002 0.008 0.006 0.002 0.001 0.004 0.180 0.014 0.064 0.082 63 T 0.001 0.022 0.535 0.001 0.003 0.048 0.001 0.001 0.002 0.329 0.010 0.003 0.047 64 P 0.001 0.001 0.016 0.001 0.032 0.910 0.001 0.001 0.001 0.014 0.026 0.001 0.001 65 E 0.001 0.001 0.003 0.001 0.021 0.954 0.001 0.001 0.001 0.005 0.017 0.001 0.001 66 K 0.001 0.001 0.002 0.001 0.011 0.978 0.001 0.001 0.001 0.001 0.009 0.001 0.001 67 L 0.001 0.001 0.005 0.001 0.002 0.989 0.001 0.001 0.001 0.001 0.002 0.001 0.001 68 K 0.001 0.001 0.005 0.001 0.001 0.988 0.001 0.001 0.001 0.001 0.004 0.001 0.001 69 R 0.001 0.001 0.001 0.001 0.001 0.992 0.001 0.001 0.001 0.001 0.004 0.001 0.001 70 E 0.001 0.001 0.003 0.001 0.002 0.988 0.001 0.001 0.001 0.002 0.004 0.001 0.001 71 Q 0.001 0.001 0.004 0.001 0.006 0.981 0.001 0.001 0.001 0.001 0.007 0.001 0.001 72 R 0.001 0.001 0.004 0.001 0.009 0.958 0.001 0.001 0.001 0.002 0.026 0.001 0.001 73 N 0.001 0.001 0.005 0.001 0.007 0.916 0.001 0.001 0.001 0.009 0.062 0.001 0.001 74 N 0.001 0.001 0.024 0.001 0.005 0.505 0.001 0.001 0.001 0.066 0.398 0.001 0.001 75 K 0.001 0.002 0.180 0.001 0.006 0.092 0.001 0.001 0.002 0.142 0.573 0.001 0.001 76 L 0.001 0.014 0.832 0.001 0.011 0.028 0.001 0.001 0.012 0.060 0.037 0.001 0.005 77 H 0.001 0.038 0.590 0.003 0.048 0.039 0.001 0.001 0.020 0.123 0.111 0.017 0.010 78 L 0.001 0.027 0.394 0.005 0.090 0.050 0.002 0.004 0.041 0.198 0.161 0.005 0.024 79 E 0.001 0.022 0.541 0.003 0.030 0.038 0.001 0.005 0.042 0.262 0.021 0.018 0.017 80 H 0.001 0.047 0.604 0.004 0.033 0.049 0.002 0.006 0.065 0.136 0.021 0.010 0.024 81 H 0.001 0.018 0.371 0.006 0.098 0.113 0.002 0.002 0.040 0.193 0.131 0.006 0.021 82 H 0.004 0.043 0.361 0.005 0.098 0.086 0.003 0.001 0.032 0.151 0.185 0.013 0.019 83 H 0.001 0.029 0.575 0.001 0.055 0.043 0.001 0.001 0.017 0.208 0.049 0.012 0.011 84 H 0.001 0.017 0.679 0.001 0.042 0.041 0.001 0.001 0.011 0.049 0.148 0.001 0.010 85 H 0.001 0.003 0.861 0.001 0.016 0.030 0.001 0.001 0.001 0.051 0.035 0.001 0.001