# TARGET T0335 # Using neural net t06-IDGaaH13-3-13-7-13-9-13-11-ebghtl-stride-seeded.net # This is a 4-layer network, with # window units # 3 13 # 7 13 # 9 13 # 11 6 (1 EBGHTL ) # The input amino acid frequencies were determined from # alignment T0335.t06-thin90.a2m.gz # with weighted counts, using HenikoffWeight(1.3 bits/column, 1) # The weighting was determined by the posterior distribution # after regularizing with /projects/compbio/lib/recode3.20comp. # Counts were regularized to probabilities using # /projects/compbio/lib/recode3.20comp # Total sequence weight for alignment was 12.359 # Pos AA E B G H T C 10N 1S 5N 5N 5N 5N 5N 5N 1 M 0.009 0.002 0.004 0.111 0.062 0.813 2 I 0.026 0.008 0.008 0.320 0.077 0.561 3 S 0.015 0.003 0.005 0.447 0.063 0.467 4 N 0.003 0.003 0.014 0.824 0.048 0.108 5 A 0.002 0.001 0.016 0.919 0.032 0.030 6 K 0.001 0.001 0.010 0.969 0.013 0.008 7 I 0.001 0.001 0.003 0.983 0.007 0.006 8 A 0.001 0.001 0.002 0.989 0.005 0.004 9 R 0.001 0.001 0.002 0.993 0.003 0.002 10 I 0.001 0.001 0.001 0.994 0.003 0.001 11 N 0.001 0.001 0.001 0.994 0.003 0.001 12 E 0.001 0.001 0.002 0.990 0.005 0.002 13 L 0.001 0.001 0.004 0.965 0.013 0.017 14 A 0.001 0.001 0.006 0.958 0.018 0.016 15 A 0.003 0.001 0.007 0.947 0.025 0.018 16 K 0.005 0.001 0.011 0.906 0.038 0.039 17 A 0.006 0.002 0.021 0.811 0.078 0.082 18 K 0.005 0.003 0.025 0.793 0.090 0.084 19 A 0.011 0.005 0.055 0.675 0.139 0.116 20 G 0.008 0.002 0.043 0.409 0.218 0.321 21 V 0.012 0.008 0.023 0.111 0.202 0.643 22 I 0.014 0.029 0.004 0.050 0.158 0.745 23 T 0.005 0.006 0.001 0.029 0.076 0.883 24 E 0.001 0.001 0.004 0.988 0.005 0.002 25 E 0.001 0.001 0.011 0.976 0.011 0.002 26 E 0.001 0.001 0.005 0.985 0.008 0.002 27 K 0.001 0.001 0.001 0.990 0.003 0.005 28 A 0.001 0.001 0.001 0.998 0.001 0.001 29 E 0.001 0.001 0.001 0.998 0.001 0.001 30 Q 0.001 0.001 0.001 0.998 0.001 0.001 31 Q 0.001 0.001 0.001 0.998 0.001 0.001 32 K 0.001 0.001 0.001 0.996 0.002 0.001 33 L 0.001 0.001 0.002 0.993 0.003 0.003 34 R 0.001 0.001 0.001 0.995 0.002 0.002 35 Q 0.001 0.001 0.001 0.997 0.001 0.001 36 E 0.001 0.001 0.003 0.994 0.003 0.001 37 Y 0.001 0.001 0.002 0.994 0.002 0.001 38 L 0.001 0.001 0.001 0.995 0.003 0.001 39 K 0.001 0.001 0.001 0.997 0.001 0.001 40 G 0.001 0.001 0.003 0.990 0.005 0.002 41 F 0.001 0.001 0.003 0.991 0.004 0.002 42 R 0.001 0.001 0.002 0.993 0.004 0.001 43 S 0.001 0.001 0.002 0.993 0.003 0.002 44 S 0.001 0.001 0.004 0.962 0.014 0.019 45 M 0.002 0.001 0.013 0.931 0.031 0.023 46 K 0.005 0.001 0.017 0.918 0.050 0.009 47 N 0.012 0.001 0.021 0.880 0.066 0.020 48 T 0.017 0.001 0.033 0.765 0.065 0.119 49 L 0.039 0.009 0.133 0.663 0.126 0.030 50 K 0.089 0.002 0.115 0.405 0.326 0.063 51 S 0.139 0.001 0.075 0.304 0.329 0.151 52 V 0.733 0.014 0.002 0.019 0.095 0.135 53 K 0.896 0.004 0.001 0.002 0.012 0.085 54 I 0.970 0.002 0.001 0.001 0.005 0.022 55 I 0.873 0.023 0.001 0.001 0.015 0.087 56 D 0.243 0.025 0.001 0.001 0.716 0.014 57 P 0.003 0.001 0.012 0.001 0.977 0.007 58 E 0.001 0.001 0.018 0.001 0.976 0.005 59 G 0.005 0.011 0.013 0.001 0.968 0.002 60 N 0.029 0.021 0.025 0.004 0.434 0.487 61 D 0.130 0.310 0.030 0.007 0.281 0.241 62 V 0.105 0.084 0.014 0.011 0.334 0.452 63 T 0.039 0.014 0.002 0.015 0.119 0.812 64 P 0.001 0.001 0.016 0.935 0.027 0.020 65 E 0.001 0.001 0.009 0.983 0.006 0.001 66 K 0.001 0.001 0.016 0.971 0.010 0.001 67 L 0.007 0.002 0.006 0.967 0.011 0.007 68 K 0.004 0.001 0.002 0.980 0.006 0.007 69 R 0.003 0.001 0.003 0.975 0.008 0.012 70 E 0.002 0.001 0.004 0.960 0.014 0.021 71 Q 0.002 0.002 0.007 0.943 0.026 0.021 72 R 0.002 0.001 0.014 0.876 0.065 0.042 73 N 0.002 0.001 0.018 0.766 0.104 0.108 74 N 0.004 0.002 0.020 0.454 0.175 0.345 75 K 0.014 0.003 0.027 0.287 0.228 0.441 76 L 0.040 0.011 0.056 0.401 0.213 0.279 77 H 0.061 0.019 0.065 0.468 0.170 0.217 78 L 0.061 0.011 0.073 0.467 0.176 0.212 79 E 0.050 0.010 0.078 0.445 0.188 0.229 80 H 0.039 0.013 0.065 0.389 0.224 0.269 81 H 0.027 0.007 0.085 0.254 0.316 0.311 82 H 0.028 0.013 0.077 0.157 0.306 0.419 83 H 0.026 0.012 0.061 0.096 0.311 0.494 84 H 0.014 0.011 0.020 0.078 0.165 0.712 85 H 0.002 0.001 0.001 0.002 0.023 0.972