# TARGET T0335 # Using neural net t06-IDGaaH13-3-13-7-13-9-13-11-str2-seeded.net # This is a 4-layer network, with # window units # 3 13 # 7 13 # 9 13 # 11 13 (1 str2 ) # The input amino acid frequencies were determined from # alignment T0335.t06-thin90.a2m.gz # with weighted counts, using HenikoffWeight(1.3 bits/column, 1) # The weighting was determined by the posterior distribution # after regularizing with /projects/compbio/lib/recode3.20comp. # Counts were regularized to probabilities using # /projects/compbio/lib/recode3.20comp # Total sequence weight for alignment was 12.359 # Pos AA A B C E G H M P Q S T Y Z 10N 1S 5N 5N 5N 5N 5N 5N 5N 5N 5N 5N 5N 5N 5N 1 M 0.001 0.009 0.789 0.001 0.005 0.130 0.001 0.001 0.001 0.028 0.022 0.005 0.009 2 I 0.001 0.016 0.652 0.001 0.008 0.238 0.001 0.001 0.002 0.035 0.029 0.008 0.011 3 S 0.001 0.004 0.350 0.001 0.012 0.511 0.001 0.001 0.001 0.058 0.050 0.004 0.008 4 N 0.001 0.001 0.054 0.001 0.011 0.872 0.001 0.001 0.001 0.028 0.030 0.001 0.001 5 A 0.001 0.001 0.026 0.001 0.007 0.937 0.001 0.001 0.001 0.011 0.015 0.001 0.001 6 K 0.001 0.001 0.017 0.001 0.005 0.958 0.001 0.001 0.001 0.004 0.011 0.001 0.002 7 I 0.001 0.001 0.017 0.001 0.002 0.970 0.001 0.001 0.001 0.004 0.005 0.001 0.001 8 A 0.001 0.001 0.007 0.001 0.001 0.980 0.001 0.001 0.001 0.003 0.007 0.001 0.001 9 R 0.001 0.001 0.004 0.001 0.001 0.983 0.001 0.001 0.001 0.002 0.009 0.001 0.001 10 I 0.001 0.001 0.004 0.001 0.001 0.987 0.001 0.001 0.001 0.002 0.006 0.001 0.001 11 N 0.001 0.001 0.004 0.001 0.001 0.988 0.001 0.001 0.001 0.003 0.004 0.001 0.001 12 E 0.001 0.001 0.002 0.001 0.001 0.992 0.001 0.001 0.001 0.001 0.005 0.001 0.001 13 L 0.001 0.001 0.002 0.001 0.001 0.988 0.001 0.001 0.001 0.001 0.008 0.001 0.001 14 A 0.001 0.001 0.005 0.001 0.001 0.980 0.001 0.001 0.001 0.003 0.012 0.001 0.001 15 A 0.001 0.001 0.006 0.001 0.002 0.970 0.001 0.001 0.001 0.002 0.019 0.001 0.001 16 K 0.001 0.001 0.007 0.001 0.004 0.942 0.001 0.001 0.001 0.005 0.041 0.001 0.001 17 A 0.001 0.001 0.022 0.001 0.007 0.891 0.001 0.001 0.001 0.011 0.067 0.001 0.001 18 K 0.001 0.003 0.029 0.001 0.013 0.867 0.001 0.001 0.001 0.015 0.072 0.001 0.001 19 A 0.001 0.003 0.064 0.001 0.018 0.645 0.001 0.001 0.001 0.036 0.232 0.001 0.001 20 G 0.001 0.001 0.069 0.001 0.014 0.125 0.001 0.001 0.001 0.146 0.642 0.001 0.001 21 V 0.001 0.010 0.691 0.001 0.005 0.030 0.001 0.001 0.003 0.120 0.132 0.002 0.007 22 I 0.001 0.044 0.844 0.001 0.001 0.006 0.001 0.001 0.004 0.086 0.007 0.005 0.004 23 T 0.001 0.007 0.918 0.001 0.001 0.018 0.001 0.001 0.002 0.048 0.001 0.001 0.006 24 E 0.001 0.001 0.003 0.001 0.006 0.978 0.001 0.001 0.001 0.003 0.011 0.001 0.001 25 E 0.001 0.001 0.002 0.001 0.009 0.976 0.001 0.001 0.001 0.001 0.011 0.001 0.001 26 E 0.001 0.001 0.004 0.001 0.005 0.987 0.001 0.001 0.001 0.002 0.002 0.001 0.001 27 K 0.001 0.001 0.002 0.001 0.001 0.997 0.001 0.001 0.001 0.001 0.001 0.001 0.001 28 A 0.001 0.001 0.001 0.001 0.001 0.997 0.001 0.001 0.001 0.001 0.001 0.001 0.001 29 E 0.001 0.001 0.001 0.001 0.001 0.996 0.001 0.001 0.001 0.001 0.003 0.001 0.001 30 Q 0.001 0.001 0.002 0.001 0.001 0.994 0.001 0.001 0.001 0.001 0.002 0.001 0.001 31 Q 0.001 0.001 0.001 0.001 0.001 0.998 0.001 0.001 0.001 0.001 0.001 0.001 0.001 32 K 0.001 0.001 0.001 0.001 0.001 0.997 0.001 0.001 0.001 0.001 0.002 0.001 0.001 33 L 0.001 0.001 0.001 0.001 0.001 0.997 0.001 0.001 0.001 0.001 0.003 0.001 0.001 34 R 0.001 0.001 0.001 0.001 0.001 0.996 0.001 0.001 0.001 0.001 0.002 0.001 0.001 35 Q 0.001 0.001 0.001 0.001 0.001 0.998 0.001 0.001 0.001 0.001 0.001 0.001 0.001 36 E 0.001 0.001 0.001 0.001 0.001 0.995 0.001 0.001 0.001 0.001 0.004 0.001 0.001 37 Y 0.001 0.001 0.001 0.001 0.001 0.992 0.001 0.001 0.001 0.001 0.007 0.001 0.001 38 L 0.001 0.001 0.001 0.001 0.001 0.990 0.001 0.001 0.001 0.001 0.007 0.001 0.001 39 K 0.001 0.001 0.001 0.001 0.002 0.985 0.001 0.001 0.001 0.001 0.011 0.001 0.001 40 G 0.001 0.001 0.001 0.001 0.003 0.965 0.001 0.001 0.001 0.001 0.029 0.001 0.001 41 F 0.001 0.001 0.006 0.001 0.008 0.960 0.001 0.001 0.001 0.005 0.021 0.001 0.001 42 R 0.001 0.001 0.008 0.001 0.005 0.963 0.001 0.001 0.001 0.006 0.016 0.001 0.001 43 S 0.001 0.001 0.003 0.001 0.005 0.968 0.001 0.001 0.001 0.003 0.021 0.001 0.001 44 S 0.001 0.001 0.003 0.001 0.004 0.975 0.001 0.001 0.001 0.002 0.016 0.001 0.001 45 M 0.001 0.001 0.005 0.001 0.004 0.978 0.001 0.001 0.001 0.003 0.009 0.001 0.001 46 K 0.001 0.001 0.007 0.001 0.012 0.953 0.001 0.001 0.001 0.006 0.020 0.001 0.001 47 N 0.001 0.001 0.006 0.001 0.017 0.899 0.001 0.001 0.001 0.006 0.067 0.002 0.001 48 T 0.001 0.001 0.024 0.001 0.031 0.824 0.001 0.001 0.001 0.013 0.103 0.001 0.002 49 L 0.001 0.008 0.138 0.001 0.072 0.634 0.001 0.001 0.014 0.039 0.076 0.003 0.013 50 K 0.001 0.004 0.085 0.152 0.123 0.209 0.001 0.001 0.008 0.086 0.315 0.010 0.007 51 S 0.003 0.002 0.076 0.024 0.176 0.085 0.002 0.001 0.022 0.105 0.455 0.013 0.036 52 V 0.017 0.003 0.381 0.010 0.051 0.037 0.009 0.009 0.159 0.078 0.022 0.026 0.198 53 K 0.036 0.009 0.065 0.003 0.004 0.015 0.022 0.020 0.452 0.026 0.005 0.286 0.058 54 I 0.087 0.014 0.054 0.001 0.001 0.007 0.057 0.016 0.295 0.007 0.001 0.024 0.437 55 I 0.129 0.248 0.117 0.006 0.001 0.005 0.063 0.008 0.154 0.012 0.001 0.148 0.108 56 D 0.001 0.011 0.915 0.001 0.001 0.001 0.001 0.001 0.009 0.018 0.001 0.003 0.042 57 P 0.001 0.001 0.010 0.001 0.020 0.008 0.001 0.001 0.001 0.015 0.947 0.001 0.001 58 E 0.001 0.001 0.017 0.001 0.025 0.005 0.001 0.001 0.001 0.047 0.904 0.001 0.001 59 G 0.001 0.002 0.211 0.001 0.014 0.005 0.001 0.001 0.001 0.700 0.064 0.001 0.001 60 N 0.001 0.048 0.529 0.001 0.007 0.011 0.001 0.001 0.002 0.280 0.096 0.002 0.024 61 D 0.002 0.368 0.330 0.003 0.004 0.007 0.001 0.001 0.002 0.159 0.036 0.012 0.075 62 V 0.002 0.262 0.553 0.002 0.003 0.006 0.001 0.001 0.002 0.090 0.009 0.034 0.036 63 T 0.001 0.018 0.881 0.001 0.001 0.007 0.001 0.001 0.001 0.045 0.001 0.002 0.043 64 P 0.001 0.001 0.005 0.001 0.019 0.954 0.001 0.001 0.001 0.003 0.018 0.001 0.001 65 E 0.001 0.001 0.001 0.001 0.012 0.977 0.001 0.001 0.001 0.001 0.010 0.001 0.001 66 K 0.001 0.001 0.002 0.001 0.015 0.974 0.001 0.001 0.001 0.001 0.007 0.001 0.001 67 L 0.001 0.001 0.010 0.001 0.004 0.978 0.001 0.001 0.001 0.002 0.006 0.001 0.001 68 K 0.001 0.001 0.015 0.001 0.004 0.963 0.001 0.001 0.001 0.003 0.013 0.001 0.001 69 R 0.001 0.001 0.011 0.001 0.004 0.954 0.001 0.001 0.001 0.006 0.022 0.001 0.002 70 E 0.001 0.001 0.025 0.001 0.003 0.937 0.001 0.001 0.001 0.009 0.024 0.001 0.001 71 Q 0.001 0.002 0.037 0.001 0.006 0.914 0.001 0.001 0.001 0.010 0.029 0.001 0.001 72 R 0.001 0.001 0.034 0.001 0.007 0.878 0.001 0.001 0.001 0.016 0.062 0.001 0.001 73 N 0.001 0.001 0.055 0.001 0.010 0.684 0.001 0.001 0.001 0.022 0.225 0.001 0.001 74 N 0.001 0.002 0.124 0.001 0.011 0.511 0.001 0.001 0.001 0.115 0.234 0.001 0.002 75 K 0.001 0.008 0.238 0.001 0.023 0.470 0.001 0.001 0.002 0.099 0.146 0.005 0.007 76 L 0.002 0.023 0.218 0.001 0.050 0.467 0.001 0.001 0.007 0.089 0.109 0.009 0.023 77 H 0.004 0.017 0.248 0.005 0.068 0.422 0.001 0.001 0.006 0.088 0.100 0.017 0.023 78 L 0.007 0.020 0.246 0.005 0.095 0.337 0.002 0.001 0.009 0.095 0.125 0.021 0.037 79 E 0.005 0.012 0.262 0.004 0.084 0.277 0.001 0.001 0.006 0.116 0.187 0.017 0.026 80 H 0.006 0.016 0.267 0.003 0.100 0.225 0.002 0.001 0.006 0.136 0.192 0.020 0.027 81 H 0.008 0.023 0.262 0.004 0.110 0.207 0.001 0.001 0.004 0.136 0.192 0.016 0.039 82 H 0.004 0.016 0.316 0.004 0.079 0.140 0.001 0.001 0.002 0.163 0.236 0.018 0.021 83 H 0.002 0.012 0.355 0.002 0.048 0.092 0.001 0.001 0.002 0.207 0.252 0.009 0.019 84 H 0.001 0.010 0.640 0.001 0.018 0.044 0.001 0.001 0.002 0.130 0.135 0.006 0.013 85 H 0.001 0.004 0.953 0.001 0.002 0.005 0.001 0.001 0.001 0.024 0.004 0.003 0.005