# TARGET T0335 # Using neural net t06-IDGaaH13-3-13-7-13-9-13-11-bys-seeded.net # This is a 4-layer network, with # window units # 3 13 # 7 13 # 9 13 # 11 11 (1 Bystroff ) # The input amino acid frequencies were determined from # alignment T0335.t06-thin90.a2m.gz # with weighted counts, using HenikoffWeight(1.3 bits/column, 1) # The weighting was determined by the posterior distribution # after regularizing with /projects/compbio/lib/recode3.20comp. # Counts were regularized to probabilities using # /projects/compbio/lib/recode3.20comp # Total sequence weight for alignment was 12.359 # Pos AA H E P G Y N L T D S C 10N 1S 5N 5N 5N 5N 5N 5N 5N 5N 5N 5N 5N 1 M 0.390 0.160 0.190 0.104 0.057 0.024 0.033 0.015 0.018 0.010 0.001 2 I 0.396 0.161 0.237 0.111 0.021 0.036 0.010 0.003 0.018 0.006 0.001 3 S 0.356 0.118 0.332 0.047 0.055 0.028 0.011 0.003 0.017 0.032 0.001 4 N 0.959 0.001 0.005 0.018 0.001 0.003 0.008 0.003 0.001 0.001 0.001 5 A 0.969 0.002 0.004 0.021 0.001 0.001 0.001 0.001 0.001 0.001 0.001 6 K 0.981 0.001 0.002 0.014 0.001 0.001 0.001 0.001 0.001 0.001 0.001 7 I 0.992 0.001 0.003 0.003 0.001 0.001 0.001 0.001 0.001 0.001 0.001 8 A 0.997 0.001 0.001 0.002 0.001 0.001 0.001 0.001 0.001 0.001 0.001 9 R 0.992 0.001 0.001 0.007 0.001 0.001 0.001 0.001 0.001 0.001 0.001 10 I 0.988 0.001 0.001 0.010 0.001 0.001 0.001 0.001 0.001 0.001 0.001 11 N 0.986 0.001 0.001 0.010 0.001 0.001 0.001 0.001 0.001 0.001 0.001 12 E 0.987 0.001 0.001 0.010 0.001 0.001 0.001 0.001 0.001 0.001 0.001 13 L 0.978 0.001 0.001 0.019 0.001 0.001 0.001 0.001 0.001 0.001 0.001 14 A 0.975 0.002 0.003 0.015 0.001 0.001 0.002 0.001 0.001 0.001 0.001 15 A 0.940 0.003 0.004 0.047 0.001 0.002 0.002 0.001 0.001 0.001 0.001 16 K 0.917 0.011 0.022 0.040 0.001 0.004 0.003 0.001 0.001 0.001 0.001 17 A 0.797 0.024 0.034 0.112 0.006 0.007 0.009 0.004 0.005 0.003 0.001 18 K 0.762 0.027 0.039 0.114 0.006 0.015 0.023 0.003 0.009 0.002 0.001 19 A 0.445 0.040 0.093 0.306 0.018 0.014 0.054 0.011 0.011 0.007 0.001 20 G 0.201 0.047 0.105 0.130 0.089 0.017 0.121 0.244 0.012 0.033 0.001 21 V 0.238 0.178 0.303 0.114 0.053 0.032 0.043 0.004 0.028 0.006 0.001 22 I 0.059 0.143 0.607 0.089 0.013 0.073 0.005 0.001 0.008 0.001 0.001 23 T 0.012 0.142 0.742 0.002 0.075 0.016 0.001 0.001 0.009 0.003 0.001 24 E 0.997 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 25 E 0.996 0.001 0.001 0.003 0.001 0.001 0.001 0.001 0.001 0.001 0.001 26 E 0.994 0.001 0.001 0.005 0.001 0.001 0.001 0.001 0.001 0.001 0.001 27 K 0.999 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 28 A 0.999 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 29 E 0.996 0.001 0.001 0.003 0.001 0.001 0.001 0.001 0.001 0.001 0.001 30 Q 0.999 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 31 Q 0.999 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 32 K 0.998 0.001 0.001 0.002 0.001 0.001 0.001 0.001 0.001 0.001 0.001 33 L 0.993 0.001 0.001 0.007 0.001 0.001 0.001 0.001 0.001 0.001 0.001 34 R 0.997 0.001 0.001 0.002 0.001 0.001 0.001 0.001 0.001 0.001 0.001 35 Q 0.999 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 36 E 0.995 0.001 0.001 0.005 0.001 0.001 0.001 0.001 0.001 0.001 0.001 37 Y 0.976 0.001 0.001 0.022 0.001 0.001 0.001 0.001 0.001 0.001 0.001 38 L 0.985 0.001 0.001 0.011 0.001 0.001 0.001 0.001 0.001 0.001 0.001 39 K 0.991 0.001 0.001 0.007 0.001 0.001 0.001 0.001 0.001 0.001 0.001 40 G 0.982 0.001 0.001 0.012 0.001 0.001 0.001 0.003 0.001 0.001 0.001 41 F 0.935 0.001 0.003 0.059 0.001 0.002 0.001 0.001 0.001 0.001 0.001 42 R 0.964 0.004 0.005 0.021 0.001 0.002 0.001 0.001 0.001 0.001 0.001 43 S 0.971 0.003 0.007 0.014 0.001 0.001 0.001 0.001 0.001 0.001 0.001 44 S 0.938 0.003 0.005 0.044 0.002 0.003 0.002 0.001 0.002 0.001 0.001 45 M 0.977 0.001 0.001 0.019 0.001 0.001 0.001 0.001 0.001 0.001 0.001 46 K 0.982 0.002 0.003 0.011 0.001 0.001 0.001 0.001 0.001 0.001 0.001 47 N 0.952 0.002 0.002 0.037 0.001 0.002 0.003 0.001 0.001 0.001 0.001 48 T 0.785 0.007 0.007 0.192 0.001 0.003 0.001 0.001 0.002 0.001 0.001 49 L 0.568 0.085 0.186 0.103 0.007 0.029 0.006 0.002 0.015 0.001 0.001 50 K 0.873 0.005 0.012 0.106 0.001 0.001 0.002 0.001 0.001 0.001 0.001 51 S 0.203 0.152 0.051 0.329 0.186 0.011 0.039 0.012 0.014 0.002 0.001 52 V 0.024 0.598 0.286 0.018 0.022 0.019 0.002 0.001 0.031 0.001 0.001 53 K 0.023 0.688 0.179 0.005 0.026 0.044 0.001 0.001 0.035 0.001 0.001 54 I 0.008 0.563 0.350 0.004 0.009 0.046 0.001 0.001 0.017 0.001 0.001 55 I 0.020 0.613 0.224 0.019 0.028 0.062 0.001 0.001 0.031 0.001 0.001 56 D 0.001 0.122 0.735 0.001 0.036 0.061 0.001 0.001 0.043 0.001 0.001 57 P 0.976 0.001 0.004 0.019 0.001 0.001 0.001 0.001 0.001 0.001 0.001 58 E 0.376 0.002 0.032 0.579 0.001 0.002 0.004 0.001 0.002 0.001 0.001 59 G 0.040 0.002 0.036 0.093 0.010 0.003 0.123 0.658 0.006 0.029 0.001 60 N 0.177 0.033 0.557 0.071 0.008 0.021 0.095 0.018 0.008 0.011 0.001 61 D 0.128 0.070 0.262 0.238 0.029 0.088 0.117 0.032 0.030 0.004 0.001 62 V 0.101 0.362 0.381 0.090 0.030 0.024 0.002 0.001 0.008 0.001 0.001 63 T 0.017 0.206 0.621 0.003 0.064 0.032 0.001 0.001 0.051 0.005 0.001 64 P 0.917 0.001 0.066 0.008 0.001 0.004 0.001 0.001 0.001 0.001 0.002 65 E 0.989 0.001 0.002 0.007 0.001 0.001 0.001 0.001 0.001 0.001 0.001 66 K 0.977 0.001 0.002 0.018 0.001 0.001 0.001 0.001 0.001 0.001 0.001 67 L 0.963 0.002 0.007 0.023 0.001 0.001 0.001 0.001 0.001 0.001 0.001 68 K 0.966 0.004 0.007 0.013 0.001 0.002 0.003 0.001 0.001 0.001 0.001 69 R 0.964 0.007 0.007 0.018 0.002 0.001 0.001 0.001 0.001 0.001 0.001 70 E 0.939 0.007 0.007 0.039 0.002 0.002 0.001 0.001 0.001 0.001 0.001 71 Q 0.865 0.012 0.011 0.093 0.002 0.006 0.003 0.001 0.006 0.001 0.001 72 R 0.803 0.025 0.034 0.078 0.007 0.012 0.026 0.004 0.006 0.006 0.001 73 N 0.627 0.021 0.039 0.186 0.011 0.029 0.061 0.006 0.012 0.006 0.001 74 N 0.361 0.052 0.074 0.382 0.018 0.028 0.060 0.008 0.015 0.001 0.001 75 K 0.470 0.046 0.069 0.116 0.024 0.022 0.208 0.022 0.015 0.007 0.001 76 L 0.559 0.111 0.124 0.133 0.016 0.028 0.011 0.002 0.015 0.002 0.001 77 H 0.472 0.149 0.118 0.139 0.028 0.038 0.023 0.004 0.027 0.003 0.001 78 L 0.521 0.107 0.155 0.102 0.022 0.038 0.023 0.004 0.023 0.004 0.001 79 E 0.471 0.132 0.166 0.140 0.024 0.030 0.014 0.004 0.017 0.002 0.001 80 H 0.353 0.130 0.187 0.180 0.034 0.044 0.032 0.005 0.032 0.003 0.001 81 H 0.396 0.113 0.167 0.189 0.029 0.038 0.032 0.005 0.025 0.004 0.001 82 H 0.319 0.089 0.125 0.294 0.023 0.056 0.051 0.007 0.032 0.004 0.001 83 H 0.253 0.127 0.195 0.245 0.032 0.053 0.046 0.007 0.037 0.004 0.001 84 H 0.255 0.107 0.230 0.227 0.024 0.052 0.056 0.015 0.028 0.006 0.001 85 H 0.232 0.160 0.242 0.141 0.058 0.037 0.062 0.023 0.028 0.017 0.001