# List of top-scoring protein chains for t06-100-30-dssp-ehl2-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # # FSSP representative for each protein chain taken from FSSP: # ------------------Citations (FSSP) ----------------------------------- # L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue FSSP-rep SCOP_domain SCOP_suid 5S 5N 12S 6S 12S 10N 2aexA 346 4.80e-01 2c5kT 95 8.33e-01 1y96B 85 1.05e+00 2b1eA 564 1.34e+00 1oyc 400 1.42e+00 1oyc c.1.4.1 28603 1wdpA 495 1.43e+00 1t3wA 148 1.79e+00 1jixA 351 1.84e+00 1c3jA c.87.1.1 63081 1wdtA 665 2.00e+00 1bbhA 131 2.02e+00 1bbhA a.24.3.2 16546 1f46A 140 2.19e+00 1f46A d.129.4.1 59643 2fbhA 146 2.28e+00 1wmhA 89 2.35e+00 1lj9A 144 2.61e+00 a.4.5.28 78035 1ynfA 458 2.63e+00 2agaA 190 3.42e+00 1tw9A 206 4.21e+00 a.45.1.1,c.47.1.5 107381,107382 1yirA 408 4.27e+00 1txnA 328 4.37e+00 1eca 136 4.50e+00 1flp a.1.1.2 15209 1eejA 216 5.13e+00 1eejA c.47.1.9,d.17.3.1 33057,38071 1q74A 303 5.20e+00 c.134.1.1 96019 1jo0A 98 6.13e+00 d.68.4.1 77140 1h6pA 203 6.15e+00 a.146.1.1 60690 1xhdA 173 6.29e+00 1wy1A 172 6.43e+00 2a6sA 84 6.76e+00 1ofcX 304 6.97e+00 a.4.1.3,a.4.1.13,a.187.1.1 92826,92827,92828 2au5A 139 7.23e+00 2ajrA 331 7.43e+00 1ym3A 215 8.39e+00 2beqD 48 8.91e+00 1y9qA 192 9.04e+00 1t95A 240 9.08e+00 a.5.8.1,d.235.1.2,d.58.11.3 106705,106706,106707 1j93A 353 9.18e+00 c.1.22.1 66454 1cvrA 435 9.26e+00 1cvrA b.1.18.12,c.17.1.2 21949,31006 1avsA 90 9.87e+00 1cll a.39.1.5 17226 1r2rA 248 1.02e+01 c.1.1.1 96875 1v1dA 31 1.02e+01 1b0nA 111 1.05e+01 1b0nA a.34.1.1,a.35.1.3 17001,17064 1ka1A 357 1.08e+01 e.7.1.1 68369 1ovnA 248 1.11e+01 a.71.1.1,c.47.1.7 93602,93603 1omrA 201 1.12e+01 a.39.1.5 93349 1wkyA 464 1.16e+01 1n4kA 381 1.18e+01 a.118.22.1,b.42.6.1 79992,79993 1sczA 233 1.24e+01 c.43.1.1 98802 1cpq 129 1.25e+01 1cpq a.24.3.2 16556 2fueA 262 1.31e+01 1xpcA 248 1.31e+01 2b5aA 77 1.32e+01 2etxA 209 1.35e+01 2af4C 333 1.35e+01 2fu2A 102 1.37e+01 1y7qA 98 1.41e+01 1tr0A 108 1.43e+01 d.58.4.4 107261 1xd8A 289 1.43e+01 1xk5A 204 1.44e+01 1hulA 108 1.45e+01 1hulA a.26.1.2 16865 1m1eB 81 1.50e+01 a.161.1.1 78400 1ir6A 424 1.61e+01 c.107.1.2 71342 1sauA 115 1.61e+01 1ockA 412 1.66e+01 c.117.1.1 86802 1k5nA 276 1.75e+01 b.1.1.2,d.19.1.1 77266,77267 1y791 680 1.81e+01 1woyA 500 1.82e+01 2f9dA 125 1.82e+01 1b0b 142 1.85e+01 2fal a.1.1.2 15010 1vjeA 166 1.86e+01 d.185.1.2 100807 2f6mA 65 1.88e+01 2erbA 125 1.88e+01 1pvmA 184 1.89e+01 d.37.1.1,d.37.1.1,g.41.13.1 95171,95172,95173 1n3lA 372 1.89e+01 c.26.1.1 79966 1a7w 69 1.93e+01 1a7w a.22.1.2 16477 3tmkA 216 1.93e+01 3tmkA c.37.1.1 31920 2fsjA 346 1.94e+01 1iscA 192 1.96e+01 1avmA a.2.11.1,d.44.1.1 15733,38726 1azo 232 1.97e+01 1azo c.52.1.14 33329 1dp3A 55 2.01e+01 1dp3A a.55.1.2 59128 1p5zB 263 2.04e+01 c.37.1.1 87815 1dugA 234 2.11e+01 1b8xA a.45.1.1,c.47.1.5 17718,33012 1m0uA 249 2.15e+01 a.45.1.1,c.47.1.5 78359,78360 2fnoA 248 2.16e+01 2amdA 311 2.16e+01 1h5rA 293 2.17e+01 c.68.1.6 65623 1ofdA 1520 2.27e+01 b.80.4.1,c.1.4.1,d.153.1.1 86935,86936,86937 2cvhA 220 2.27e+01 1v2zA 111 2.34e+01 a.186.1.1 108300 1aj8A 371 2.35e+01 1aj8A a.103.1.1 18900 1r2zA 274 2.35e+01 a.156.1.2,b.113.1.1,g.39.1.8 96892,96893,96894 1v3wA 173 2.39e+01 b.81.1.5 100291 1czqA 46 2.40e+01 1czqA h.3.2.1 45720 1paqA 189 2.47e+01 a.118.1.14 94413 1iznB 277 2.53e+01 e.43.1.2 83848 1h8eA 510 2.56e+01 1skyB a.69.1.1,b.49.1.1,c.37.1.11 60738,60739,60740 2a4vA 159 2.57e+01 2ap3A 199 2.63e+01 1wmiB 67 2.65e+01 1upvA 257 2.67e+01 2b7kA 200 2.67e+01 1syyA 346 2.68e+01 a.25.1.2 106126 1lqtA 456 2.72e+01 c.3.1.1,c.4.1.1 74198,74199 1puoA 170 2.73e+01 a.101.1.1,a.101.1.1 95134,95135 1grj 158 2.73e+01 1grj a.2.1.1,d.26.1.2 15691,38433 2fefA 294 2.84e+01 2fcwA 109 2.89e+01 1vflA 356 2.90e+01 1keaA 221 3.01e+01 a.96.1.2 68491 2bskB 90 3.02e+01 1i4dA 224 3.04e+01 h.4.7.1 61682 1k2xB 143 3.13e+01 1wekA 217 3.14e+01 1wmaA 276 3.14e+01 1acf 125 3.14e+01 3nul d.110.1.1 40882 2d81A 318 3.16e+01 1g0cA 364 3.18e+01 7a3hA c.1.8.3 60165 1yozA 116 3.22e+01 1zljA 78 3.24e+01 1l8dA 112 3.27e+01 h.4.12.1 73687 2cfxA 144 3.31e+01 2bezF 42 3.33e+01 2ezvA 269 3.34e+01 1uw4A 91 3.36e+01 d.58.7.4 100071 2ffuA 501 3.39e+01 2ck3A 510 3.42e+01 1edg 380 3.48e+01 1edg c.1.8.3 28807 2f5tX 233 3.51e+01 1p65A 73 3.52e+01 d.254.1.1 94156 2b8wA 328 3.54e+01 1cojA 212 3.56e+01 1avmA a.2.11.1,d.44.1.1 15737,38734 1wbeA 209 3.62e+01 1r0mA 375 3.66e+01 c.1.11.2,d.54.1.1 104747,104748 1fexA 59 3.68e+01 a.4.1.3 59803 1im5A 180 3.70e+01 c.33.1.3 66211 1j09A 468 3.72e+01 a.97.1.1,c.26.1.1 77025,77026 1a6q 382 3.72e+01 1a6q a.159.1.1,d.219.1.1 75801,75802 1ji6A 589 3.72e+01 b.18.1.3,b.77.2.1,f.1.3.1 63066,63067,63068 1kv5A 250 3.73e+01 c.1.1.1 73052 1bj7 156 3.76e+01 1bj7 b.60.1.1 27113 1z90A 469 3.77e+01 2cybA 323 3.80e+01 1b8zA 90 3.83e+01 1huuA a.55.1.1 17902 1nvmA 345 3.85e+01 a.5.7.1,c.1.10.5 86249,86250 1v77A 212 3.86e+01 c.6.3.2 108402 1ajsA 412 3.87e+01 1ajsA c.67.1.1 34276 1cmcA 104 3.87e+01 1cmbA a.43.1.5 17462 1nkpA 88 3.91e+01 a.38.1.1 80573 1sdiA 213 3.94e+01 a.198.1.1 105437 1t5bA 201 3.98e+01 c.23.5.3 106433 2gl5A 410 3.99e+01 1q4rA 112 4.00e+01 d.58.4.4 95823 1to6A 371 4.00e+01 c.141.1.1 107170 1lvfA 110 4.00e+01 a.47.2.1 74280 1qazA 351 4.04e+01 1qazA a.102.3.1 18848 2bmaA 470 4.08e+01 1q45A 391 4.11e+01 c.1.4.1 95780 1g6hA 257 4.15e+01 1gajA c.37.1.12 60318 2c1vA 338 4.17e+01 1b0nB 57 4.23e+01 1b0nB a.34.1.1 17002 1y7yA 74 4.24e+01 1yzyA 413 4.29e+01 1whzA 70 4.30e+01 1spvA 184 4.30e+01 c.50.1.2 98957 2c4jA 218 4.31e+01 1auoA 218 4.31e+01 1auoA c.69.1.14 34716 1lm4A 194 4.31e+01 d.167.1.1 84626 1qjtA 99 4.33e+01 1eh2 a.39.1.6 17335 1yf3A 259 4.37e+01 1wi6A 88 4.38e+01 2aukA 190 4.46e+01 1m2dA 110 4.49e+01 c.47.1.11 78476 2basA 431 4.49e+01 1vyrA 364 4.50e+01 c.1.4.1 108906 1or4A 178 4.57e+01 a.1.1.2 93447 1vjuA 309 4.57e+01 d.248.1.1 100835 1zroA 602 4.59e+01 2gwgA 350 4.59e+01 2a40B 260 4.63e+01 1zbsA 291 4.65e+01 1ew6A 137 4.66e+01 1ewaA a.1.1.2 15637 1c1dA 355 4.71e+01 1bw9A c.2.1.7,c.58.1.1 30270,33918 1gjnA 153 4.72e+01 a.1.1.2 70191 1tzzA 392 4.76e+01 2frfA 153 4.86e+01 1nkd 65 4.92e+01 1nkd a.30.1.1 16974 2cxxA 190 4.92e+01 1tn6A 382 4.93e+01 1pl4A 198 4.98e+01 a.2.11.1,d.44.1.1 94854,94855 2ar0A 541 5.01e+01 1dekA 241 5.05e+01 1dekA c.37.1.1 31842 1izmA 184 5.10e+01 a.199.1.1 90725 2gnoA 305 5.11e+01 1y2kA 349 5.12e+01 1dpsA 167 5.14e+01 1dpsA a.25.1.1 16716 1ufmA 84 5.14e+01 a.4.5.47 107816 1l0wA 580 5.17e+01 b.40.4.1,d.74.4.1,d.104.1.1 73426,73427,73428 1nh1A 330 5.25e+01 e.45.1.1 91871 1e5pA 151 5.28e+01 1bj7 b.60.1.1 59272 1f6vA 91 5.28e+01 1f6vA a.49.1.1 17791 1h5wA 309 5.32e+01 e.27.1.1 65635 1y8aA 332 5.33e+01 2gdzA 267 5.39e+01 1eluA 390 5.40e+01 1elqA c.67.1.3 34434 2b18A 164 5.42e+01 2aaoA 166 5.48e+01 1pkhA 204 5.53e+01 b.85.4.1 94832 1btkA 169 5.55e+01 1btkA b.55.1.1 26959 1yzmA 51 5.58e+01 1qhtA 775 5.63e+01 1tgoA c.55.3.5,e.8.1.1 33722,43011 1woqA 267 5.64e+01 c.55.1.10,c.55.1.10 109462,109463 1rqjA 299 5.71e+01 a.128.1.1 97744 1qksA 567 5.76e+01 1qksA a.3.1.2,b.70.2.1 15951,27710 2bkfA 87 5.78e+01 1iq4A 179 5.79e+01 1iq4A d.77.1.1 62641 1q5dA 419 5.79e+01 a.104.1.1 95891 1mj3A 260 5.80e+01 c.14.1.3 79183 1yy7A 213 5.83e+01 1xeuA 263 5.85e+01 1j79A 347 5.90e+01 1j79A c.1.9.4 62675 1jk0B 345 5.90e+01 a.25.1.2 63143 1vykA 149 5.91e+01 2fikA 287 5.91e+01 2apjA 260 5.95e+01 2f62A 161 6.00e+01 1k3bB 164 6.03e+01 d.3.1.1 72015 2fpqA 444 6.09e+01 2bpa1 426 6.11e+01 2bpa1 1r44A 202 6.12e+01 d.65.1.4 104787 1z0kB 69 6.12e+01 1q0rA 298 6.15e+01 c.69.1.28 95508 1lnwA 147 6.16e+01 a.4.5.28 78104 1y8qA 346 6.17e+01 1qsmA 152 6.22e+01 1qsmA d.108.1.1 40808 1b67A 68 6.24e+01 1a7w a.22.1.2 16474 1j98A 157 6.26e+01 1j98A d.185.1.2 62755 1x54A 434 6.28e+01 2bo9B 222 6.33e+01 2c3nA 247 6.33e+01 1l7yA 94 6.36e+01 d.15.1.6 73676 1zjcA 418 6.38e+01 1k1vA 41 6.40e+01 a.37.1.1 71999 1w8sA 263 6.48e+01 1wrdA 103 6.51e+01 1ek9A 428 6.56e+01 1ek9A f.5.1.1 43809 1ak0 270 6.56e+01 1ak0 a.124.1.2 19345 1t0iA 191 6.57e+01 c.23.5.4 106209 1vhuA 211 6.58e+01 c.50.1.2 100703 2fk8A 318 6.58e+01 2d4pA 141 6.60e+01 1hnjA 317 6.61e+01 1hn9A c.95.1.2,c.95.1.2 35969,35970 1z0xA 220 6.65e+01 1v63A 101 6.67e+01 a.21.1.1 108391 1o50A 157 6.77e+01 d.37.1.1,d.37.1.1 92478,92479 1wc3A 219 6.80e+01 1jk4A 89 6.81e+01 b.9.1.1 77130 1no4A 97 6.81e+01 h.1.24.1 85918 1o6dA 163 6.84e+01 c.116.1.3 92567 1uz5A 402 6.88e+01 b.85.6.1,b.103.1.1,c.57.1.2 100217,100218,100219 1erv 105 6.89e+01 1erv c.47.1.1 32743 1pmzA 86 6.89e+01 a.39.1.10 104195 2tpsA 227 6.94e+01 2tpsA c.1.3.1 28591 1vjvA 415 6.97e+01 d.3.1.9 108632 1om1A 332 7.02e+01 d.144.1.7 93347 2bkaA 242 7.06e+01 1wi9A 72 7.08e+01 2a15A 139 7.24e+01 1o5uA 101 7.24e+01 b.82.1.8 92518 1jatA 155 7.32e+01 1u9aA d.20.1.1 62818 1pixA 587 7.34e+01 c.14.1.4 94708 2cqsA 842 7.34e+01 1wpuA 147 7.40e+01 1v4aA 440 7.41e+01 a.24.16.4,d.218.1.9 108350,108351 2czrA 226 7.44e+01 2cq2A 114 7.54e+01 2cbzA 237 7.54e+01 1ii7A 333 7.55e+01 1ii7A d.159.1.4 62415 1rh5A 436 7.58e+01 f.41.1.1 97464 1v5iB 76 7.59e+01 1gmlA 178 7.68e+01 c.8.5.2 70273 1uok 558 7.68e+01 1uok b.71.1.1,c.1.8.1 27801,28788 1kqpA 271 7.72e+01 c.26.2.1 72883 1z7xW 461 7.75e+01 1fy7A 278 7.75e+01 1fy7A d.108.1.1 40817 1n83A 270 7.79e+01 a.123.1.1 80276 1f1mA 164 7.81e+01 1ggqA a.24.12.1 59598 1g6uA 48 7.81e+01 1g6uA k.9.1.1 46425 1epwA 1290 7.82e+01 b.29.1.6,b.42.4.2,d.92.1.7,h.4.2.1 24269,25614,40305,45785 2aotA 292 7.84e+01 1u1iA 392 7.88e+01 c.2.1.3,d.81.1.3 107582,107583 1zp4A 304 7.88e+01 1fcqA 350 7.90e+01 c.1.8.9 65006 1olmA 403 7.91e+01 a.5.3.1,b.132.1.1,c.13.1.1 104008,104009,104010 1v0lA 313 7.91e+01 c.1.8.3 108207 1uddA 226 7.92e+01 a.132.1.3 107776 1jboA 162 7.94e+01 a.1.1.3 84150 1h97A 147 7.96e+01 1h97A a.1.1.2 60812 2f46A 156 8.05e+01 1swvA 267 8.07e+01 1si2A 149 8.21e+01 b.34.14.1 105569 1iz5A 249 8.25e+01 d.131.1.2,d.131.1.2 83834,83835 1i36A 264 8.28e+01 a.100.1.8,c.2.1.6 71108,71109 1a6m 151 8.35e+01 1a6m a.1.1.2 15018 1h3nA 878 8.39e+01 a.27.1.1,b.51.1.1,c.26.1.1 76641,76642,76643 1rkbA 173 8.41e+01 1xteA 154 8.42e+01 1uvqB 198 8.43e+01 b.1.1.2,d.19.1.1 100064,100065 1vqoV 71 8.45e+01 1sknP 92 8.47e+01 1sknP a.37.1.1 17127 1j77A 209 8.50e+01 1j77A a.132.1.2 62674 1ev0A 58 8.53e+01 1ev0A d.71.1.1 39594 1e1hB 174 8.56e+01 1brwA 433 8.57e+01 1brwA a.46.2.1,c.27.1.1,d.41.3.1 17764,31628,38626 1regX 122 8.67e+01 1regX d.58.27.1 39406 1wrrA 301 8.71e+01 1a41 234 8.76e+01 1a41 d.163.1.2 42174 1lbkA 208 8.80e+01 a.45.1.1,c.47.1.5 73809,73810 2f2eA 146 8.80e+01 1vbuA 328 8.85e+01