# List of top-scoring protein chains for t06-100-30-CB_burial_14_7-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # # FSSP representative for each protein chain taken from FSSP: # ------------------Citations (FSSP) ----------------------------------- # L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue FSSP-rep SCOP_domain SCOP_suid 5S 5N 12S 6S 12S 10N 1hfeS 123 3.05e-01 1hfeS a.137.4.1 19640 1y96B 85 1.41e+00 2a2fX 325 2.03e+00 2ezh 75 2.04e+00 2ezh a.4.1.2 16029 1mkkA 96 2.54e+00 g.17.1.1 79240 1p9yA 121 2.92e+00 d.241.2.1 94402 1wdtA 665 2.95e+00 1wmhA 89 3.08e+00 1xhdA 173 4.75e+00 1umdA 367 7.35e+00 c.36.1.11 99599 1avsA 90 8.51e+00 1cll a.39.1.5 17226 1qo7A 394 9.01e+00 1qo7A c.69.1.11 34697 1k5nA 276 9.78e+00 b.1.1.2,d.19.1.1 77266,77267 2dd8S 202 1.03e+01 1owfA 99 1.11e+01 a.55.1.1 87487 1bg1A 722 1.16e+01 1bg1A a.47.1.1,b.2.5.5,d.93.1.1 17767,22461,40527 1wq8A 110 1.18e+01 2c5kT 95 1.19e+01 1zs4A 83 1.26e+01 2bfdA 400 1.39e+01 2vsgA 358 1.41e+01 2vsgA h.4.1.1 45780 1x7yA 400 1.56e+01 1fzvA 132 1.57e+01 1vpfA g.17.1.1 60159 1cpq 129 1.70e+01 1cpq a.24.3.2 16556 2f6hX 419 1.78e+01 1ev0A 58 1.98e+01 1ev0A d.71.1.1 39594 2f66C 82 1.98e+01 1vzsA 76 2.09e+01 f.45.1.1 108972 1z0pA 84 2.12e+01 1ybxA 143 2.24e+01 1doi 128 2.25e+01 1awd d.15.4.1 37676 1xzoA 174 2.29e+01 2fueA 262 2.34e+01 1o22A 170 2.34e+01 d.238.1.1 86557 1v1dA 31 2.59e+01 1ib8A 164 2.70e+01 b.38.2.1,d.52.4.1 71168,71169 1y14B 171 2.71e+01 1noyA 388 2.72e+01 1clqA c.55.3.5 33713 1tzyD 103 2.75e+01 a.22.1.1 107533 1x54A 434 2.76e+01 2fug5 207 2.78e+01 1lj9A 144 2.88e+01 a.4.5.28 78035 1w07A 659 2.90e+01 1m1eB 81 2.94e+01 a.161.1.1 78400 1yzyA 413 3.02e+01 1jixA 351 3.12e+01 1c3jA c.87.1.1 63081 1upvA 257 3.15e+01 1zv1A 65 3.25e+01 1vdlA 80 3.34e+01 a.5.2.1 108528 1yqgA 263 3.35e+01 1dp3A 55 3.56e+01 1dp3A a.55.1.2 59128 2c2aA 258 3.59e+01 1grj 158 3.60e+01 1grj a.2.1.1,d.26.1.2 15691,38433 1owfB 94 3.63e+01 a.55.1.1 87488 1dz3A 130 3.66e+01 1dz3A c.23.1.1 31105 1pcfA 66 3.70e+01 1pcfA d.18.1.1 38142 1ylxA 103 3.83e+01 2fm9A 215 3.94e+01 1ag7 34 3.98e+01 1ag7 g.3.6.1 44086 1olmA 403 4.04e+01 a.5.3.1,b.132.1.1,c.13.1.1 104008,104009,104010 1vmhA 144 4.05e+01 2fbhA 146 4.07e+01 1r59O 505 4.11e+01 1tq4A 413 4.14e+01 c.37.1.8 107201 1ofcX 304 4.16e+01 a.4.1.3,a.4.1.13,a.187.1.1 92826,92827,92828 1ns5A 155 4.18e+01 c.116.1.3 80705 1dwkA 156 4.20e+01 1dw9A a.35.1.4,d.72.1.1 17075,39606 2crbA 97 4.22e+01 1zroA 602 4.22e+01 1v54D 147 4.31e+01 f.23.1.1 100325 1fexA 59 4.38e+01 a.4.1.3 59803 1wt6A 81 4.52e+01 2fji1 399 4.52e+01 1poiA 317 4.54e+01 1poiA c.124.1.2 34153 1n7sC 79 4.56e+01 h.1.15.1 80273 1ji6A 589 4.57e+01 b.18.1.3,b.77.2.1,f.1.3.1 63066,63067,63068 1uedA 406 4.67e+01 a.104.1.1 99256 1d2vA 104 4.70e+01 1d2vA a.93.1.2 18697 2bykA 140 4.72e+01 1twfL 70 4.73e+01 2aukA 190 4.78e+01 1b67A 68 4.85e+01 1a7w a.22.1.2 16474 1l8dA 112 4.89e+01 h.4.12.1 73687 1bx7 55 4.89e+01 1bx7 g.3.15.1 44355 1vjvA 415 4.90e+01 d.3.1.9 108632 1jb0J 41 5.05e+01 1jb0J f.23.18.1 62827 1k3bB 164 5.07e+01 d.3.1.1 72015 1a7w 69 5.07e+01 1a7w a.22.1.2 16477 1szoA 257 5.08e+01 c.14.1.3 106164 1efpB 252 5.13e+01 1efvB c.26.2.3 31636 2f0cA 191 5.21e+01 1xh3A 276 5.26e+01 2d68A 82 5.41e+01 1n8jA 186 5.46e+01 c.47.1.10 85401 1y7qA 98 5.53e+01 1fr3A 67 5.66e+01 1fr3A b.40.6.1 25436 1p65A 73 5.72e+01 d.254.1.1 94156 1v3wA 173 5.76e+01 b.81.1.5 100291 1wy1A 172 5.81e+01 1pmzA 86 5.85e+01 a.39.1.10 104195 2beqD 48 5.94e+01 1ie9A 259 6.03e+01 1db1A a.123.1.1 62318 2fcwA 109 6.07e+01 1tjlA 151 6.10e+01 a.2.14.1,g.39.1.13 107027,107028 2f31A 233 6.14e+01 2ftuA 118 6.29e+01 1msc 129 6.36e+01 1msc d.85.1.1 40039 2es4D 332 6.44e+01 1nu7D 282 6.52e+01 a.8.6.1,a.8.6.1 92191,92192 1y1oA 203 6.53e+01 1xouA 192 6.55e+01 1ykiA 217 6.63e+01 1t3wA 148 6.70e+01 1n0qA 93 6.94e+01 k.37.1.1 79754 1vkuA 100 6.99e+01 a.28.1.1 108690 1dxrH 258 7.03e+01 6prcH b.41.1.1,f.23.10.1 25456,43433 1z8kA 193 7.18e+01 1fjgL 135 7.36e+01 1fjfL b.40.4.5 25346 1wlmA 151 7.40e+01 1kn7A 78 7.42e+01 j.12.1.1 84413 1w33A 181 7.42e+01 2d4pA 141 7.55e+01 1wu9A 80 7.59e+01 2gboA 104 7.61e+01 1cl4A 60 7.65e+01 1cl4A g.40.1.1 45171 1nrlA 316 7.68e+01 a.123.1.1 92091 2cs2A 134 8.01e+01 1wq6A 72 8.01e+01 1tmxA 293 8.40e+01 1vmbA 140 8.40e+01 2cg4A 152 8.82e+01 1j1jA 240 8.87e+01 a.118.16.1 90762 2f42A 179 8.97e+01