Best Alignments for T0335

To select the top models, SAM generates pairwise alignments of the target sequence and the best-scoring templates. The alignments with the best E-values are presented here.

Warning: E-values smaller than about 0.001 may be overly optimistic.

A2M alignment AL alignment Template E-value Alignment cost FSSP rep SCOP Domain(s)
1t3wA/T0335-1t3wA-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m 1t3wA/T0335-1t3wA-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.al 2.3561e+001.25e-03
1b5sA/T0335-1b5sA-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m 1b5sA/T0335-1b5sA-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.al 2.6300e+007.44e-02 1eaf c.43.1.1
1y96B/T0335-1y96B-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m 1y96B/T0335-1y96B-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.al 4.3673e+008.03e+00
1xhdA/T0335-1xhdA-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m 1xhdA/T0335-1xhdA-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.al 4.5245e+007.39e-06
2aexA/T0335-2aexA-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m 2aexA/T0335-2aexA-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.al 4.6734e+001.25e-02
2au5A/T0335-2au5A-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m 2au5A/T0335-2au5A-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.al 4.9497e+009.64e-07
1wdtA/T0335-1wdtA-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m 1wdtA/T0335-1wdtA-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.al 5.0384e+001.44e-05
1wmhA/T0335-1wmhA-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m 1wmhA/T0335-1wmhA-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.al 5.0703e+001.54e-02
1lj9A/T0335-1lj9A-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m 1lj9A/T0335-1lj9A-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.al 5.2630e+008.92e-04 a.4.5.28
1il1A/T0335-1il1A-t04-global-adpstyle1.a2m 1il1A/T0335-1il1A-t04-global-adpstyle1.al 5.9694e+005.88e-02 1igtB b.1.1.1
b.1.1.2

Please cite: Karplus, K. and Karchin, R. and Barrett, C. and Tu, S. and Cline, M. and Diekhans, M. and Grate, L. and Casper, J. and Hughey, R. ``What is the value added by human intervention in protein structure prediction?'' Proteins: Structure Function and Genetics 45(S5):86-91,2001