# TARGET T0335 # Using neural net t04-2621-IDGaaH13-3-13-7-13-9-13-11-ebghtl-stride-seeded.net # This is a 4-layer network, with # window units # 3 13 # 7 13 # 9 13 # 11 6 (1 EBGHTL ) # The input amino acid frequencies were determined from # alignment T0335.t04-thin90.a2m.gz # with weighted counts, using HenikoffWeight(1.3 bits/column, 1) # The weighting was determined by the posterior distribution # after regularizing with /projects/compbio/lib/recode3.20comp. # Counts were regularized to probabilities using # /projects/compbio/lib/recode3.20comp # Total sequence weight for alignment was 12.359 # Pos AA E B G H T C 10N 1S 5N 5N 5N 5N 5N 5N 1 M 0.026 0.009 0.010 0.134 0.127 0.694 2 I 0.042 0.017 0.013 0.381 0.109 0.437 3 S 0.025 0.011 0.013 0.607 0.076 0.268 4 N 0.004 0.001 0.012 0.925 0.023 0.035 5 A 0.002 0.001 0.009 0.967 0.010 0.011 6 K 0.001 0.001 0.003 0.990 0.003 0.004 7 I 0.001 0.001 0.001 0.997 0.001 0.001 8 A 0.001 0.001 0.001 0.996 0.001 0.001 9 R 0.001 0.001 0.001 0.997 0.001 0.001 10 I 0.001 0.001 0.001 0.997 0.001 0.001 11 N 0.001 0.001 0.001 0.997 0.001 0.001 12 E 0.001 0.001 0.001 0.998 0.001 0.001 13 L 0.001 0.001 0.001 0.997 0.001 0.002 14 A 0.001 0.001 0.001 0.998 0.001 0.001 15 A 0.001 0.001 0.002 0.996 0.001 0.001 16 K 0.001 0.001 0.002 0.994 0.003 0.001 17 A 0.001 0.001 0.005 0.982 0.009 0.003 18 K 0.001 0.001 0.008 0.953 0.024 0.013 19 A 0.001 0.001 0.018 0.798 0.083 0.098 20 G 0.003 0.002 0.019 0.122 0.213 0.641 21 V 0.012 0.015 0.019 0.023 0.188 0.743 22 I 0.032 0.038 0.004 0.014 0.161 0.751 23 T 0.009 0.006 0.001 0.015 0.065 0.904 24 E 0.001 0.001 0.007 0.982 0.005 0.005 25 E 0.001 0.001 0.011 0.982 0.005 0.002 26 E 0.001 0.001 0.006 0.989 0.003 0.001 27 K 0.001 0.001 0.002 0.991 0.003 0.005 28 A 0.001 0.001 0.001 0.999 0.001 0.001 29 E 0.001 0.001 0.001 0.999 0.001 0.001 30 Q 0.001 0.001 0.001 0.999 0.001 0.001 31 Q 0.001 0.001 0.001 0.999 0.001 0.001 32 K 0.001 0.001 0.001 0.999 0.001 0.001 33 L 0.001 0.001 0.001 0.999 0.001 0.001 34 R 0.001 0.001 0.001 0.999 0.001 0.001 35 Q 0.001 0.001 0.001 0.999 0.001 0.001 36 E 0.001 0.001 0.001 0.998 0.001 0.001 37 Y 0.001 0.001 0.001 0.997 0.001 0.001 38 L 0.001 0.001 0.001 0.997 0.001 0.001 39 K 0.001 0.001 0.001 0.997 0.001 0.001 40 G 0.001 0.001 0.002 0.992 0.002 0.003 41 F 0.001 0.001 0.003 0.990 0.003 0.003 42 R 0.001 0.001 0.003 0.991 0.004 0.002 43 S 0.001 0.001 0.004 0.989 0.004 0.003 44 S 0.001 0.001 0.005 0.971 0.008 0.014 45 M 0.001 0.001 0.009 0.960 0.011 0.018 46 K 0.004 0.001 0.018 0.935 0.029 0.013 47 N 0.010 0.001 0.028 0.876 0.060 0.026 48 T 0.020 0.003 0.049 0.723 0.080 0.125 49 L 0.049 0.006 0.116 0.628 0.150 0.051 50 K 0.095 0.004 0.096 0.413 0.289 0.103 51 S 0.152 0.002 0.053 0.280 0.291 0.222 52 V 0.779 0.008 0.005 0.036 0.083 0.089 53 K 0.944 0.004 0.001 0.007 0.010 0.034 54 I 0.973 0.004 0.001 0.002 0.006 0.015 55 I 0.855 0.013 0.001 0.002 0.025 0.103 56 D 0.208 0.011 0.002 0.002 0.696 0.081 57 P 0.007 0.001 0.026 0.003 0.943 0.019 58 E 0.002 0.002 0.032 0.006 0.946 0.012 59 G 0.005 0.011 0.027 0.002 0.946 0.007 60 N 0.028 0.023 0.060 0.023 0.565 0.302 61 D 0.077 0.106 0.107 0.071 0.432 0.208 62 V 0.056 0.042 0.028 0.090 0.468 0.316 63 T 0.024 0.014 0.003 0.077 0.132 0.750 64 P 0.001 0.001 0.010 0.973 0.009 0.007 65 E 0.001 0.001 0.007 0.990 0.002 0.001 66 K 0.001 0.001 0.014 0.979 0.005 0.001 67 L 0.002 0.001 0.007 0.976 0.007 0.008 68 K 0.001 0.001 0.003 0.986 0.004 0.005 69 R 0.001 0.001 0.004 0.985 0.005 0.004 70 E 0.001 0.001 0.004 0.981 0.008 0.006 71 Q 0.001 0.001 0.007 0.968 0.016 0.007 72 R 0.001 0.001 0.016 0.934 0.033 0.015 73 N 0.002 0.001 0.025 0.814 0.080 0.077 74 N 0.004 0.002 0.041 0.405 0.187 0.361 75 K 0.015 0.006 0.042 0.145 0.256 0.536 76 L 0.069 0.019 0.060 0.118 0.285 0.448 77 H 0.112 0.028 0.065 0.155 0.245 0.394 78 L 0.120 0.018 0.095 0.148 0.273 0.345 79 E 0.112 0.015 0.126 0.152 0.302 0.293 80 H 0.095 0.025 0.116 0.178 0.321 0.266 81 H 0.067 0.020 0.102 0.124 0.413 0.274 82 H 0.053 0.018 0.063 0.072 0.423 0.372 83 H 0.032 0.016 0.043 0.060 0.373 0.476 84 H 0.026 0.019 0.015 0.040 0.225 0.675 85 H 0.015 0.005 0.002 0.007 0.071 0.900